Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003229

Physical Location & Seq

Genomic Coordinates Reverse (-)

2255855 .. 2259553

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG034000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGGGGACCATAGCCCTAACTGCAAGCATACACCAATTAAGACCGTCCCACGGCTGCGACGGTCAATCCCAAGATTGCCCTCAGCCCAACAGTTGGCAGCTGGCCATACTCTTCATGGGCCTGGGCTTACTATCAATTGGAGCGGGTGGGATTAGGCCCTGCAACATTGCATTTGGTGCTGACCAATTTGACACCAGAACAGCCAAAGGAAGAGCACAACTAGAGAGCTTCTTCAATTGGTGGTACTTCTCCTTCACCGTTGCTCTTGTTATAGCTCTCACCGGAGTTGTGTATATTCAGACCAACATCAGCTGGGCCGTAGGGTTTGCTATCCCCACCGCCTGTCTTGCCTTCTCCATCACAATCTTCTTGCTTGGCCAACACGCTTACATTTACATGAAGCCCCAGGGAAGCATTTTTTCAGACGTAGCAAAAGTGATCATAGCTGCTTGTAGGAAGTCTAGGGTCAGGGTTGCACCGGATGCAGAGCCCAACTTTTATGATCCTCCTTTGGTTGATAATGGGTGTGAGAGACAAGTGGTGATCAAGTACCCTCACACTAATAGGTTCAAATTCCTTGACAGAGCTGCCATCATAACAAACCCTAATCAAGAATTGGACGATCTGTGTAAGCCTAAAAGTGGGTGGAGACTATGTAGCCTTCAACAAGTTGAGCAGTTAAAGTTTCTGGTGGCGATCTTACCGGTTTGGGTAACAGCAATTGGTACTTTCATAACCATGGACCAAATGAACACTTTCGGAGTGCTACAAGCTTTGCAAATGGACAGATCAATAGGACCCAAATTTCATTTCCCACCCGGTTGGATGAACATAACCTCCATGCTCGCACTTGCTACATGGATCTTCACTTATGAGAGGATTTACCTCCCTCTAGCCAAAAAATTCAGCAGATCATCGTCAACCGATCTCCGATTCACAATGCAGCAGAGAATCAATACAGGCATCGTCCTTTCGATTTTGACAATGTTGGTGTCTGGGATCGTAGAGGAACACAGAAGGAAATCAGCATTGAAGCATGGCTCGTACATTTCGCCCACAAGTTTCGCATTGCTGTTGCCACAGTATTTCTTGACGGGCCTGACCGAGTCTTTTTCTGCTGTTGCCATAATGGAGTTCTTCACCATGCAAATGCCGGAGAGCATGAGAACTGTTGCTGGGGCAGTCTTCTTCCTTAGCTTATCTGTGTCGAATTACTTAGGCTCATTCATAGTGAACATGGTCCACAAGGCGACTGAGGGCAAATCGCCGTGGGTAGGCGGTCACGACCTTAACAAGAACAAGCTCGACTGCTACTACTACATCATTGCTGGTTTGGGGGCTCTGAATCTCGTATACTTCAATTTGTTTGCAAGACATTATGTGTTGGTCGGTAAAAAGCCTGGTCATGATAGTGGGAAAGGAGAAGTGCAGCTAGAGAATCCGAATCCAATTGCTCGTGATAGTTCAAACGATGAGAACAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

495

Amino Acids

55.14

Weight (kDa)

9.0

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	2 - 425	2.3e-70	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28470 AT5G28470
fragaria_vesca	FvH4_5g15610 FvH4_5g15610 FvH4_5g15610 FvH4_5g15660 FvH4_5g15660 FvH4_5g15660 FvH4_6g12851
malus_domestica	MD04G1137500.v1.1 MD06G1186800.v1.1 MD12G1152300.v1.1 MD14G1193200.v1.1
prunus_persica	Prupe.5G185300_v2.0.a1 Prupe.6G263500_v2.0.a1 Prupe.6G263500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464881 RchiOBHm_Chr7g0180471
rosa_laevigata	RLG00000005264 RLG00000024668
rosa_multiflora	Rmu_co8023650.1_g000001 Rmu_co8294651.1_g000001 Rmu_sc0003322.1_g000004 Rmu_sc0005690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272850 Rroxscaffold_6G00415380
rosa_rugosa	Rorug03G0074400 Rorug06G0433000
rosa_samantha	Rh3BG137300 Rh3CG139900 Rh3DG138700 Rh7AG034000 Rh7BG034000 Rh7CG035800 Rh7DG034400
rosa_wichuraiana	Rw3G011220 Rw7G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	1353
AciI	CCGC	3 cut(s)	143, 339, 1278
AclWI	GGATC	3 cut(s)	497, 869, 1007
AcoI	YGGCCR	2 cut(s)	102, 376
AcsI	RAATTY	3 cut(s)	572, 803, 902
AfaI	GTAC	4 cut(s)	245, 551, 727, 1046
AfiI	CCNNNNNNNGG	4 cut(s)	50, 93, 641, 1274
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	6 cut(s)	235, 571, 665, 1033, 1360, 1467
AjnI	CCWGG	3 cut(s)	120, 405, 1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AloI	GAACNNNNNNTCC	2 cut(s)	821, 853
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	526, 643
AlwI	GGATC	3 cut(s)	497, 869, 1007
AoxI	GGCC	6 cut(s)	102, 118, 155, 315, 376, 1096
ApeKI	GCWGC	6 cut(s)	54, 97, 446, 587, 943, 1429
ApoI	RAATTY	3 cut(s)	572, 803, 902
AsiGI	ACCGGT	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	755
AspS9I	GGNCC	8 cut(s)	6, 118, 156, 315, 742, 797, 1096, 1240
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	4 cut(s)	247, 271, 553, 1132
AvaII	GGWCC	4 cut(s)	6, 742, 797, 1240
BalI	TGGCCA	2 cut(s)	104, 378
BanII	GRGCYC	2 cut(s)	492, 1342
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	1455
BbsI	GAAGAC	1 cut(s)	1177
Bbv12I	GWGCWC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	6 cut(s)	41, 109, 433, 574, 955, 1441
BccI	CCATC	2 cut(s)	365, 599
BceAI	ACGGC	3 cut(s)	67, 302, 1252
BciT130I	CCWGG	3 cut(s)	122, 407, 1401
BclI	TGATCA	2 cut(s)	438, 543
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	2 cut(s)	526, 643
BfaI	CTAG	4 cut(s)	221, 462, 893, 1433
BisI	GCNGC	6 cut(s)	55, 98, 447, 588, 944, 1430
BlsI	GCNGC	6 cut(s)	56, 99, 448, 589, 945, 1431
Bme1390I	CCNGG	4 cut(s)	122, 407, 819, 1401
Bme18I	GGWCC	4 cut(s)	6, 742, 797, 1240
BmgT120I	GGNCC	8 cut(s)	6, 118, 156, 315, 742, 797, 1096, 1240
BmiI	GGNNCC	2 cut(s)	7, 799
BmrFI	CCNGG	4 cut(s)	122, 407, 819, 1401
BmsI	GCATC	2 cut(s)	472, 972
BpiI	GAAGAC	1 cut(s)	1177
Bpu10I	CCTNAGC	2 cut(s)	81, 1193
BpuMI	CCSGG	1 cut(s)	819
BsaJI	CCNNGG	6 cut(s)	49, 121, 405, 406, 738, 1268
BsaWI	WCCGGW	3 cut(s)	281, 478, 703
BsaXI	ACNNNNNCTCC	4 cut(s)	640, 670, 821, 851
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 93, 641, 1274
Bse118I	RCCGGY	1 cut(s)	703
Bse3DI	GCAATG	3 cut(s)	165, 1067, 1323
BseBI	CCWGG	3 cut(s)	122, 407, 1401
BseDI	CCNNGG	6 cut(s)	49, 121, 405, 406, 738, 1268
BseGI	GGATG	2 cut(s)	487, 831
BseLI	CCNNNNNNNGG	4 cut(s)	50, 93, 641, 1274
BseMI	GCAATG	3 cut(s)	165, 1067, 1323
BseMII	CTCAG	2 cut(s)	95, 1245
BseXI	GCAGC	6 cut(s)	41, 109, 433, 574, 955, 1441
BseYI	CCCAGC	2 cut(s)	312, 1175
BsgI	GTGCAG	1 cut(s)	1448
BshFI	GGCC	6 cut(s)	104, 120, 157, 317, 378, 1098
BshTI	ACCGGT	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	5 cut(s)	282, 479, 704, 819, 1154
BslFI	GGGAC	2 cut(s)	19, 31
BslI	CCNNNNNNNGG	4 cut(s)	50, 93, 641, 1274
BsmAI	GTCTC	2 cut(s)	526, 643
BsmFI	GGGAC	2 cut(s)	19, 31
BsnI	GGCC	6 cut(s)	104, 120, 157, 317, 378, 1098
Bsp1286I	GDGCHC	3 cut(s)	217, 492, 1342
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	3 cut(s)	143, 339, 1278
BspANI	GGCC	6 cut(s)	104, 120, 157, 317, 378, 1098
BspCNI	CTCAG	2 cut(s)	94, 1246
BspHI	TCATGA	1 cut(s)	1405
BspLI	GGNNCC	2 cut(s)	7, 799
BspPI	GGATC	3 cut(s)	497, 869, 1007
BspQI	GCTCTTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	143
BsrDI	GCAATG	3 cut(s)	165, 1067, 1323
BsrFI	RCCGGY	1 cut(s)	703
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	6 cut(s)	49, 121, 405, 406, 738, 1268
BssNAI	GTATAC	1 cut(s)	1354
BssSI	CACGAG	1 cut(s)	1455
BssT1I	CCWWGG	1 cut(s)	738
Bst1107I	GTATAC	1 cut(s)	1354
Bst2BI	CACGAG	1 cut(s)	1455
Bst2UI	CCWGG	3 cut(s)	122, 407, 1401
Bst4CI	ACNGT	6 cut(s)	45, 62, 92, 259, 1083, 1171
Bst6I	CTCTTC	2 cut(s)	116, 205
BstAPI	GCANNNNNTGC	2 cut(s)	176, 482
BstC8I	GCNNGC	3 cut(s)	25, 102, 846
BstDEI	CTNAG	4 cut(s)	81, 1193, 1216, 1254
BstDSI	CCRYGG	3 cut(s)	49, 738, 1268
BstF5I	GGATG	2 cut(s)	487, 831
BstMAI	GTCTC	2 cut(s)	526, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 176, 347, 482
BstNI	CCWGG	3 cut(s)	122, 407, 1401
BstSCI	CCNGG	4 cut(s)	120, 405, 817, 1399
BstV1I	GCAGC	6 cut(s)	41, 109, 433, 574, 955, 1441
BstV2I	GAAGAC	1 cut(s)	1177
BstX2I	RGATCY	1 cut(s)	861
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	861
BstZ17I	GTATAC	1 cut(s)	1354
BsuRI	GGCC	6 cut(s)	104, 120, 157, 317, 378, 1098
BtgI	CCRYGG	3 cut(s)	49, 738, 1268
BtsCI	GGATG	2 cut(s)	487, 831
Cac8I	GCNNGC	3 cut(s)	25, 102, 846
CciI	TCATGA	1 cut(s)	1405
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	8 cut(s)	6, 118, 156, 315, 742, 797, 1096, 1240
Csp6I	GTAC	4 cut(s)	244, 550, 726, 1045
CspAI	ACCGGT	1 cut(s)	703
CviQI	GTAC	4 cut(s)	244, 550, 726, 1045
DdeI	CTNAG	4 cut(s)	81, 1193, 1216, 1254
EaeI	YGGCCR	2 cut(s)	102, 376
Eam1104I	CTCTTC	2 cut(s)	116, 205
EarI	CTCTTC	2 cut(s)	116, 205
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	2 cut(s)	492, 1342
Eco47I	GGWCC	4 cut(s)	6, 742, 797, 1240
EcoO109I	RGGNCCY	2 cut(s)	156, 797
EcoRII	CCWGG	3 cut(s)	120, 405, 1399
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	2 cut(s)	492, 1342
ErhI	CCWWGG	1 cut(s)	738
FaqI	GGGAC	2 cut(s)	19, 31
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	2 cut(s)	438, 543
FblI	GTMKAC	1 cut(s)	1353
Fnu4HI	GCNGC	6 cut(s)	55, 98, 447, 588, 944, 1430
FokI	GGATG	2 cut(s)	494, 838
FriOI	GRGCYC	2 cut(s)	492, 1342
Fsp4HI	GCNGC	6 cut(s)	55, 98, 447, 588, 944, 1430
FspBI	CTAG	4 cut(s)	221, 462, 893, 1433
GluI	GCNGC	6 cut(s)	55, 98, 447, 588, 944, 1430
GsaI	CCCAGC	2 cut(s)	316, 1179
HaeIII	GGCC	6 cut(s)	104, 120, 157, 317, 378, 1098
HapII	CCGG	5 cut(s)	282, 479, 704, 819, 1154
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	6 cut(s)	933, 951, 1106, 1345, 1438, 1444
HpaII	CCGG	5 cut(s)	282, 479, 704, 819, 1154
HphI	GGTGA	4 cut(s)	247, 271, 553, 1132
Hpy166II	GTNNAC	4 cut(s)	921, 1234, 1243, 1354
Hpy188I	TCNGA	6 cut(s)	300, 424, 761, 932, 1344, 1443
Hpy188III	TCNNGA	5 cut(s)	611, 1090, 1283, 1406, 1457
Hpy8I	GTNNAC	4 cut(s)	921, 1234, 1243, 1354
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	4 cut(s)	262, 361, 671, 1011
HpyCH4III	ACNGT	6 cut(s)	45, 62, 92, 259, 1083, 1171
HpyCH4IV	ACGT	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 176, 347, 482
HpyF3I	CTNAG	4 cut(s)	81, 1193, 1216, 1254
HpySE526I	ACGT	1 cut(s)	426
Ksp22I	TGATCA	2 cut(s)	438, 543
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	6 cut(s)	41, 109, 433, 574, 955, 1441
LweI	GCATC	2 cut(s)	472, 972
MaeI	CTAG	4 cut(s)	221, 462, 893, 1433
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	712, 1280
MbiI	CCGCTC	1 cut(s)	143
MboII	GAAGA	8 cut(s)	103, 222, 223, 358, 856, 1129, 1177, 1180
MfeI	CAATTG	4 cut(s)	135, 235, 720, 1449
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	3 cut(s)	217, 492, 1342
MlsI	TGGCCA	2 cut(s)	104, 378
MluNI	TGGCCA	2 cut(s)	104, 378
MlyI	GAGTC	1 cut(s)	1115
MmeI	TCCRAC	1 cut(s)	803
MnlI	CCTC	9 cut(s)	90, 516, 564, 847, 870, 896, 900, 1000, 1249
Mox20I	TGGCCA	2 cut(s)	104, 378
MroXI	GAANNNNTTC	1 cut(s)	755
MscI	TGGCCA	2 cut(s)	104, 378
MseI	TTAA	4 cut(s)	38, 680, 1290, 1486
MslI	CAYNNNNRTG	4 cut(s)	395, 737, 1148, 1410
Msp20I	TGGCCA	2 cut(s)	104, 378
MspA1I	CMGCKG	2 cut(s)	100, 312
MspI	CCGG	5 cut(s)	282, 479, 704, 819, 1154
MspR9I	CCNGG	4 cut(s)	122, 407, 819, 1401
MunI	CAATTG	4 cut(s)	135, 235, 720, 1449
MvaI	CCWGG	3 cut(s)	122, 407, 1401
MwoI	GCNNNNNNNGC	4 cut(s)	20, 176, 347, 482
NciI	CCSGG	1 cut(s)	819
NcoI	CCATGG	1 cut(s)	738
NlaIV	GGNNCC	2 cut(s)	7, 799
NmuCI	GTSAC	1 cut(s)	1280
PagI	TCATGA	1 cut(s)	1405
PasI	CCCWGGG	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	755
PfeI	GAWTC	5 cut(s)	933, 951, 1345, 1438, 1444
PflFI	GACNNNGTC	1 cut(s)	1105
PflMI	CCANNNNNTGG	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	6 cut(s)	56, 99, 448, 589, 945, 1431
PleI	GAGTC	1 cut(s)	1114
PpsI	GAGTC	1 cut(s)	1114
PpuMI	RGGWCCY	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	3 cut(s)	120, 405, 1399
PspFI	CCCAGC	2 cut(s)	312, 1175
PspGI	CCWGG	3 cut(s)	120, 405, 1399
PspN4I	GGNNCC	2 cut(s)	7, 799
PspPI	GGNCC	8 cut(s)	6, 118, 156, 315, 742, 797, 1096, 1240
PspPPI	RGGWCCY	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	861
PsyI	GACNNNGTC	1 cut(s)	1105
PvuII	CAGCTG	2 cut(s)	100, 312
RsaI	GTAC	4 cut(s)	245, 551, 727, 1046
RsaNI	GTAC	4 cut(s)	244, 550, 726, 1045
RseI	CAYNNNNRTG	4 cut(s)	395, 737, 1148, 1410
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	38, 680, 1290, 1486
SatI	GCNGC	6 cut(s)	55, 98, 447, 588, 944, 1430
Sau96I	GGNCC	8 cut(s)	6, 118, 156, 315, 742, 797, 1096, 1240
SchI	GAGTC	1 cut(s)	1115
ScrFI	CCNGG	4 cut(s)	122, 407, 819, 1401
SduI	GDGCHC	3 cut(s)	217, 492, 1342
SfaNI	GCATC	2 cut(s)	472, 972
SinI	GGWCC	4 cut(s)	6, 742, 797, 1240
SmiMI	CAYNNNNRTG	4 cut(s)	395, 737, 1148, 1410
SsiI	CCGC	3 cut(s)	143, 339, 1278
SspMI	CTAG	4 cut(s)	221, 462, 893, 1433
StyD4I	CCNGG	4 cut(s)	120, 405, 817, 1399
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	6 cut(s)	45, 62, 92, 259, 1083, 1171
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	974, 1208, 1305
TaqII	GACCGA	1 cut(s)	1118
TfiI	GAWTC	5 cut(s)	933, 951, 1345, 1438, 1444
Tru1I	TTAA	4 cut(s)	38, 680, 1290, 1486
Tru9I	TTAA	4 cut(s)	38, 680, 1290, 1486
TseFI	GTSAC	1 cut(s)	1280
TseI	GCWGC	6 cut(s)	54, 97, 446, 587, 943, 1429
Tsp45I	GTSAC	1 cut(s)	1280
TspDTI	ATGAA	7 cut(s)	103, 413, 721, 764, 797, 842, 1216
Tth111I	GACNNNGTC	1 cut(s)	1105
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	4 cut(s)	6, 742, 797, 1240
XapI	RAATTY	3 cut(s)	572, 803, 902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	1353
XmnI	GAANNNNTTC	1 cut(s)	755
XspI	CTAG	4 cut(s)	221, 462, 893, 1433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.