Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294651.1

Orthogroup ID

OG0003229

Physical Location & Seq

Genomic Coordinates Reverse (-)

143 .. 727

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgattgcactttcaatatggatcatcatctacgaatgcatttacatcccgtggattcagaaaaggaacaatgatgaatctggaagattgacaatggagacgagattcaaggttggcattgtgatgtcaattctgtgcatggtggtggctggactcaccgaaatgaagcgcagaaactctgctttggaaaacggatctttcgagtcacctataactgttgcattgcttgtgccacaatttgccttgtcaggtttgatcgaggcatttgcagccattgccttaatggagttgcttacaacacagtggccaaagagcatgaggacttttgccggggcggtcttctttctcagcttatccattgcaagctacttcacctccattcttgttagcattgtcaagaaagtgactagtttgaatggcaatacatcatggctgggtggtaatgacctaaacaagaacaggcttgattactactattacaccattgctggtctcggggtcttgaacttgttgtatttccaattcattgcacgccattttctgtccgatgccgatggtcatgaccgttctagaatccccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

PTR2

Protein Analysis

194

Amino Acids

21.82

Weight (kDa)

8.91

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28470 AT5G28470
fragaria_vesca	FvH4_5g15610 FvH4_5g15610 FvH4_5g15610 FvH4_5g15660 FvH4_5g15660 FvH4_5g15660 FvH4_6g12851
malus_domestica	MD04G1137500.v1.1 MD06G1186800.v1.1 MD12G1152300.v1.1 MD14G1193200.v1.1
prunus_persica	Prupe.5G185300_v2.0.a1 Prupe.6G263500_v2.0.a1 Prupe.6G263500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464881 RchiOBHm_Chr7g0180471
rosa_laevigata	RLG00000005264 RLG00000024668
rosa_multiflora	Rmu_co8023650.1_g000001 Rmu_co8294651.1_g000001 Rmu_sc0003322.1_g000004 Rmu_sc0005690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272850 Rroxscaffold_6G00415380
rosa_rugosa	Rorug03G0074400 Rorug06G0433000
rosa_samantha	Rh3BG137300 Rh3CG139900 Rh3DG138700 Rh7AG034000 Rh7BG034000 Rh7CG035800 Rh7DG034400
rosa_wichuraiana	Rw3G011220 Rw7G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	29, 202
AcoI	YGGCCR	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	15, 109, 415, 505
AhlI	ACTAGT	1 cut(s)	407
AluBI	AGCT	2 cut(s)	351, 366
AluI	AGCT	2 cut(s)	351, 366
Alw26I	GTCTC	2 cut(s)	92, 497
AlwI	GGATC	2 cut(s)	29, 202
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	148, 198, 364
AvaI	CYCGRG	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	92, 497
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	3 cut(s)	408, 570, 583
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	50, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bse3DI	GCAATG	5 cut(s)	221, 273, 357, 483, 525
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	50, 330
BseGI	GGATG	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	26
BseMI	GCAATG	5 cut(s)	221, 273, 357, 483, 525
BseMII	CTCAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	433
BshFI	GGCC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	92, 497
BsmBI	CGTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	494
Bsp143I	GATC	3 cut(s)	21, 194, 255
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	559
BspPI	GGATC	2 cut(s)	29, 202
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	5 cut(s)	221, 273, 357, 483, 525
BssECI	CCNNGG	2 cut(s)	50, 330
BssMI	GATC	3 cut(s)	21, 194, 255
Bst4CI	ACNGT	3 cut(s)	217, 303, 566
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	364, 532
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	24, 197, 258
BstMAI	GTCTC	2 cut(s)	92, 497
BstMBI	GATC	3 cut(s)	21, 194, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 275
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	2 cut(s)	364, 532
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	171
CviAII	CATG	4 cut(s)	139, 316, 429, 560
CviJI	RGCY	7 cut(s)	149, 272, 307, 351, 366, 433, 463
CviKI_1	RGCY	7 cut(s)	149, 272, 307, 351, 366, 433, 463
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	23, 196, 257
DpnII	GATC	3 cut(s)	21, 194, 255
EaeI	YGGCCR	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	494
EcoT22I	ATGCAT	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	4 cut(s)	142, 319, 432, 563
FaiI	YATR	6 cut(s)	19, 140, 212, 317, 430, 561
FatI	CATG	4 cut(s)	138, 315, 428, 559
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	3 cut(s)	408, 570, 583
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	142, 319, 432, 563
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	6 cut(s)	55, 77, 105, 153, 203, 573
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	148, 198, 364
Hpy188I	TCNGA	2 cut(s)	60, 547
Hpy188III	TCNNGA	5 cut(s)	81, 397, 502, 560, 570
HpyCH4III	ACNGT	3 cut(s)	217, 303, 566
HpyCH4V	TGCA	7 cut(s)	8, 39, 138, 221, 269, 362, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 275
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	142, 319, 432, 563
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	21, 194, 255
LpnPI	CCDG	7 cut(s)	66, 135, 234, 343, 419, 445, 474
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	3 cut(s)	408, 570, 583
MaeIII	GTNAC	2 cut(s)	204, 403
MalI	GATC	3 cut(s)	23, 196, 257
MboI	GATC	3 cut(s)	21, 194, 255
MboII	GAAGA	2 cut(s)	96, 331
MflI	RGATCY	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	3 cut(s)	129, 236, 521
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	147, 212
MnlI	CCTC	3 cut(s)	253, 312, 385
Mox20I	TGGCCA	1 cut(s)	307
Mph1103I	ATGCAT	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	3 cut(s)	122, 143, 161
Msp20I	TGGCCA	1 cut(s)	307
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	269, 275
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	3 cut(s)	21, 194, 255
NlaIII	CATG	4 cut(s)	142, 319, 432, 563
NmuCI	GTSAC	2 cut(s)	204, 403
NsiI	ATGCAT	1 cut(s)	41
PagI	TCATGA	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	55, 77, 105, 573
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	147, 211
PpsI	GAGTC	2 cut(s)	147, 211
PspFI	CCCAGC	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	194
RseI	CAYNNNNRTG	3 cut(s)	122, 143, 161
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	21, 194, 255
SchI	GAGTC	2 cut(s)	147, 212
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	7 cut(s)	114, 211, 253, 353, 368, 377, 450
SfaNI	GCATC	1 cut(s)	538
SmiMI	CAYNNNNRTG	3 cut(s)	122, 143, 161
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	3 cut(s)	129, 236, 521
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	3 cut(s)	408, 570, 583
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	217, 303, 566
TaqI	TCGA	2 cut(s)	201, 258
TasI	AATT	3 cut(s)	129, 236, 521
TfiI	GAWTC	4 cut(s)	55, 77, 105, 573
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	2 cut(s)	204, 403
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	2 cut(s)	204, 403
TspDTI	ATGAA	3 cut(s)	90, 179, 514
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XspI	CTAG	3 cut(s)	408, 570, 583
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.