Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003229

Physical Location & Seq

Genomic Coordinates Forward (+)

23231222 .. 23231665

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGCATGCAGCAGAGTCTTCATCTGAAGGGCTAGAGAGTCAATTCCTTCCTCCGCAAAGACCGGTTAGAGGATGGAGAGCCGTCAGATACATTCTCGGGAACGAGACTTTTGAGAAGTTGGCTTCCATGAGTTTGATTGCTAATCTGGTGGTGTATCTGCACACAAAGTACCACTTGGACAACGTGGTTTCAGCTAATGTGTTTAATATATGGTCTGGCTCATGCAACATTGCACCATTGTTTGGTGCTTTTCTTGCTGATACTTATTTGGGAAAGTCTTATACTCTTCTTTTCAGCTCGATAGCATCACTTCTGGTAAGAATCTGTAAATTAGCTCACAAGAATTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

PTR2

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

9.0

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28470 AT5G28470
fragaria_vesca	FvH4_5g15610 FvH4_5g15610 FvH4_5g15610 FvH4_5g15660 FvH4_5g15660 FvH4_5g15660 FvH4_6g12851
malus_domestica	MD04G1137500.v1.1 MD06G1186800.v1.1 MD12G1152300.v1.1 MD14G1193200.v1.1
prunus_persica	Prupe.5G185300_v2.0.a1 Prupe.6G263500_v2.0.a1 Prupe.6G263500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464881 RchiOBHm_Chr7g0180471
rosa_laevigata	RLG00000005264 RLG00000024668
rosa_multiflora	Rmu_co8023650.1_g000001 Rmu_co8294651.1_g000001 Rmu_sc0003322.1_g000004 Rmu_sc0005690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272850 Rroxscaffold_6G00415380
rosa_rugosa	Rorug03G0074400 Rorug06G0433000
rosa_samantha	Rh3BG137300 Rh3CG139900 Rh3DG138700 Rh7AG034000 Rh7BG034000 Rh7CG035800 Rh7DG034400
rosa_wichuraiana	Rw3G011220 Rw7G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AciI	CCGC	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	71, 245
AgeI	ACCGGT	1 cut(s)	64
AluBI	AGCT	3 cut(s)	197, 300, 338
AluI	AGCT	3 cut(s)	197, 300, 338
Alw26I	GTCTC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 245
Bse118I	RCCGGY	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	71, 245
BseMI	GCAATG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	71, 245
BsmAI	GTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	98
BspACI	CCGC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	172
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	3 cut(s)	8, 130, 225
CviJI	RGCY	7 cut(s)	34, 83, 125, 197, 222, 300, 338
CviKI_1	RGCY	7 cut(s)	34, 83, 125, 197, 222, 300, 338
CviQI	GTAC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	98
FaeI	CATG	3 cut(s)	11, 133, 228
FaiI	YATR	6 cut(s)	9, 131, 212, 214, 226, 285
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	3 cut(s)	7, 129, 224
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	3 cut(s)	11, 133, 228
HinfI	GANTC	3 cut(s)	17, 40, 324
HpaII	CCGG	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	28, 89
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	23, 59
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	11, 163, 228, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	11, 133, 228
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	78, 134, 204, 302
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	186
MboII	GAAGA	2 cut(s)	12, 281
MluCI	AATT	3 cut(s)	44, 332, 346
MlyI	GAGTC	2 cut(s)	26, 49
MnlI	CCTC	2 cut(s)	63, 65
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	11, 133, 228
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	25, 48
PpsI	GAGTC	2 cut(s)	25, 48
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	26, 49
SetI	ASST	4 cut(s)	189, 199, 302, 340
SfaNI	GCATC	1 cut(s)	317
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	3 cut(s)	44, 332, 346
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	44, 332, 346
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.