Prupe.6G263600_v2.0.a1

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016161
Physical Location & Seq
Forward (+)
25316460 .. 25318003
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G263600.1

Sequence Viewer

Length: 753 bp
ATGACCAAGATCGACGCCATCCGTCGATTTATCATCCCCTGCTTCTCCCCCACCAAGAAAACAACCCACTCCGCCGGCACCAAGAAACGCCTGAGCACTTCCCTGCGCGACGACCTCGACGACATTGACGCCGCTACCTCCAAAACCCACGACCCACGAGACCAAGATTCGCAGTCTTCCTCACCCACAACCGAGAATGACGCCGTCTCGACAATCGCGCCCCAGCAGCCTCGTCCCTCGAAATCCATGGTCATCGGCACCATCTTCGGCCACCGCCTCGGCCACGTGTGGTTCTGCATCCAGCACGACCGCCTCTCCACCAAACCCACCCTCCTCCTCGAGCTCTCCATCAAGACCCACCAGCTCGTCAACGAGATGCGATTCGGCCTCGTCCGCGTAACCCTCGAGTGCGACGAGTCGGGCCGGTCCCAGCTCGCCACGTGTCCGCTCCATTCCGTCCCGCTCTGGACCGTCCACTGCAACGGCCGCCAACTCGGGTTCGCGGGGAGGAGGAGAGCGAGCGATAAGGTGAAATTGATGCTGAAGACGATGCAGTCGACGACGGTCGGCGCCGGGGTTATGCCGACCGGGTACGGGTTGGAGTCGGATTCGGGTCAGGAGGTGATGTATATGAGGGCTAACTATGAGCACGTGGTGGGGAGCGCTGACTCGGAGTCGTTTCATCTGATTAACCCGGATCAGTACCCGGGTCAAGAACTCAGTGTCTTCTTGCTTAGGTCCAAGCACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

251

Amino Acids

27.79

Weight (kDa)

8.82

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 553
AccB1I GGYRCC 3 cut(s) 77, 257, 569
AccBSI CCGCTC 2 cut(s) 448, 463
AccI GTMKAC 1 cut(s) 557
AccII CGCG 4 cut(s) 108, 218, 396, 503
AciI CCGC 9 cut(s) 72, 132, 274, 310, 394, 446, 461, 487, 503
AclWI GGATC 1 cut(s) 705
AcoI YGGCCR 3 cut(s) 268, 280, 484
AcuI CTGAAG 1 cut(s) 563
AcvI CACGTG 3 cut(s) 286, 441, 652
AcyI GRCGYC 4 cut(s) 15, 129, 201, 570
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 2 cut(s) 593, 704
AfeI AGCGCT 1 cut(s) 664
AfiI CCNNNNNNNGG 1 cut(s) 594
AflIII ACRYGT 2 cut(s) 285, 440
AhdI GACNNNNNGTC 1 cut(s) 673
AluBI AGCT 3 cut(s) 343, 364, 433
AluI AGCT 3 cut(s) 343, 364, 433
Alw21I GWGCWC 3 cut(s) 98, 345, 651
Alw26I GTCTC 2 cut(s) 153, 211
AlwI GGATC 1 cut(s) 705
Ama87I CYCGRG 4 cut(s) 338, 404, 494, 706
Aor51HI AGCGCT 1 cut(s) 664
AoxI GGCC 5 cut(s) 268, 280, 385, 421, 484
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 4 cut(s) 108, 220, 572, 665
AspS9I GGNCC 4 cut(s) 421, 426, 468, 738
AsuC2I CCSGG 5 cut(s) 574, 589, 695, 707, 708
AsuHPI GGTGA 3 cut(s) 174, 541, 634
AvaI CYCGRG 4 cut(s) 338, 404, 494, 706
AvaII GGWCC 3 cut(s) 426, 468, 738
BanI GGYRCC 3 cut(s) 77, 257, 569
BanII GRGCYC 1 cut(s) 345
BauI CACGAG 1 cut(s) 156
BbrPI CACGTG 3 cut(s) 286, 441, 652
BbsI GAAGAC 3 cut(s) 168, 551, 718
Bbv12I GWGCWC 3 cut(s) 98, 345, 651
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 26, 269, 356
BceAI ACGGC 2 cut(s) 188, 499
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BcnI CCSGG 5 cut(s) 574, 589, 695, 707, 708
BcoDI GTCTC 2 cut(s) 153, 211
BfoI RGCGCY 2 cut(s) 573, 666
BisI GCNGC 3 cut(s) 132, 227, 487
BlsI GCNGC 3 cut(s) 133, 228, 488
Bme1390I CCNGG 5 cut(s) 574, 589, 695, 707, 708
Bme18I GGWCC 3 cut(s) 426, 468, 738
BmeRI GACNNNNNGTC 1 cut(s) 673
BmeT110I CYCGRG 4 cut(s) 338, 404, 494, 706
BmgT120I GGNCC 4 cut(s) 421, 426, 468, 738
BmiI GGNNCC 4 cut(s) 79, 259, 428, 571
BmrFI CCNGG 5 cut(s) 574, 589, 695, 707, 708
BmsI GCATC 4 cut(s) 306, 366, 528, 540
BoxI GACNNNNGTC 1 cut(s) 563
BpiI GAAGAC 3 cut(s) 168, 551, 718
Bpu10I CCTNAGC 2 cut(s) 92, 734
BpuMI CCSGG 5 cut(s) 574, 589, 695, 707, 708
BsaAI YACGTR 3 cut(s) 286, 441, 652
BsaHI GRCGYC 4 cut(s) 15, 129, 201, 570
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 4 cut(s) 246, 277, 573, 706
BsaXI ACNNNNNCTCC 6 cut(s) 299, 315, 329, 345, 611, 641
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse118I RCCGGY 2 cut(s) 74, 423
BseDI CCNNGG 4 cut(s) 246, 277, 573, 706
BseGI GGATG 3 cut(s) 18, 33, 297
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMII CTCAG 2 cut(s) 83, 733
BseRI GAGGAG 4 cut(s) 323, 326, 523, 526
BseX3I CGGCCG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 2 cut(s) 222, 429
Bsh1236I CGCG 4 cut(s) 108, 218, 396, 503
Bsh1285I CGRYCG 4 cut(s) 310, 487, 567, 588
BshFI GGCC 5 cut(s) 270, 282, 387, 423, 486
BshNI GGYRCC 3 cut(s) 77, 257, 569
BsiEI CGRYCG 4 cut(s) 310, 487, 567, 588
BsiHKAI GWGCWC 3 cut(s) 98, 345, 651
BsiHKCI CYCGRG 4 cut(s) 338, 404, 494, 706
BsiSI CCGG 6 cut(s) 75, 424, 573, 588, 695, 707
BslFI GGGAC 3 cut(s) 219, 412, 443
BslI CCNNNNNNNGG 1 cut(s) 594
BsmAI GTCTC 2 cut(s) 153, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 3 cut(s) 219, 412, 443
BsnI GGCC 5 cut(s) 270, 282, 387, 423, 486
Bso31I GGTCTC 1 cut(s) 153
BsoBI CYCGRG 4 cut(s) 338, 404, 494, 706
Bsp1286I GDGCHC 3 cut(s) 98, 345, 651
Bsp143I GATC 2 cut(s) 9, 697
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 9 cut(s) 72, 132, 274, 310, 394, 446, 461, 487, 503
BspANI GGCC 5 cut(s) 270, 282, 387, 423, 486
BspCNI CTCAG 2 cut(s) 84, 732
BspFNI CGCG 4 cut(s) 108, 218, 396, 503
BspHI TCATGA 1 cut(s) 749
BspLI GGNNCC 4 cut(s) 79, 259, 428, 571
BspPI GGATC 1 cut(s) 705
BspT107I GGYRCC 3 cut(s) 77, 257, 569
BspTNI GGTCTC 1 cut(s) 153
BsrBI CCGCTC 2 cut(s) 448, 463
BsrFI RCCGGY 2 cut(s) 74, 423
BssAI RCCGGY 2 cut(s) 74, 423
BssECI CCNNGG 4 cut(s) 246, 277, 573, 706
BssMI GATC 2 cut(s) 9, 697
BssNI GRCGYC 4 cut(s) 15, 129, 201, 570
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 472, 565
BstACI GRCGYC 4 cut(s) 15, 129, 201, 570
BstBAI YACGTR 3 cut(s) 286, 441, 652
BstC8I GCNNGC 3 cut(s) 76, 435, 520
BstDEI CTNAG 3 cut(s) 92, 719, 734
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 18, 33, 297
BstFNI CGCG 4 cut(s) 108, 218, 396, 503
BstH2I RGCGCY 2 cut(s) 573, 666
BstHHI GCGC 4 cut(s) 108, 220, 572, 665
BstKTI GATC 2 cut(s) 12, 700
BstMAI GTCTC 2 cut(s) 153, 211
BstMBI GATC 2 cut(s) 9, 697
BstMCI CGRYCG 4 cut(s) 310, 487, 567, 588
BstMWI GCNNNNNNNGC 3 cut(s) 226, 393, 486
BstPAI GACNNNNGTC 1 cut(s) 563
BstSCI CCNGG 5 cut(s) 572, 587, 693, 705, 706
BstUI CGCG 4 cut(s) 108, 218, 396, 503
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 3 cut(s) 168, 551, 718
BstZI CGGCCG 1 cut(s) 484
BsuRI GGCC 5 cut(s) 270, 282, 387, 423, 486
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 3 cut(s) 18, 33, 297
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 475, 727
Cac8I GCNNGC 3 cut(s) 76, 435, 520
CciI TCATGA 1 cut(s) 749
CfoI GCGC 4 cut(s) 108, 220, 572, 665
Cfr10I RCCGGY 2 cut(s) 74, 423
Cfr13I GGNCC 4 cut(s) 421, 426, 468, 738
Cfr9I CCCGGG 1 cut(s) 706
CseI GACGC 3 cut(s) 23, 137, 209
Csp6I GTAC 2 cut(s) 592, 703
CviAII CATG 2 cut(s) 247, 750
CviQI GTAC 2 cut(s) 592, 703
DdeI CTNAG 3 cut(s) 92, 719, 734
DinI GGCGCC 1 cut(s) 571
DpnI GATC 2 cut(s) 11, 699
DpnII GATC 2 cut(s) 9, 697
DraIII CACNNNGTG 1 cut(s) 655
DrdI GACNNNNNNGTC 1 cut(s) 553
DriI GACNNNNNGTC 1 cut(s) 673
DseDI GACNNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 3 cut(s) 268, 280, 484
EagI CGGCCG 1 cut(s) 484
Eam1105I GACNNNNNGTC 1 cut(s) 673
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 426, 468, 738
Eco47III AGCGCT 1 cut(s) 664
Eco52I CGGCCG 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 563
Eco72I CACGTG 3 cut(s) 286, 441, 652
Eco88I CYCGRG 4 cut(s) 338, 404, 494, 706
EcoICRI GAGCTC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 571
EheI GGCGCC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 2 cut(s) 250, 753
FaiI YATR 6 cut(s) 248, 581, 630, 632, 645, 751
FaqI GGGAC 3 cut(s) 219, 412, 443
FatI CATG 2 cut(s) 246, 749
FauI CCCGC 2 cut(s) 468, 496
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 3 cut(s) 132, 227, 487
FokI GGATG 3 cut(s) 5, 20, 284
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 132, 227, 487
GlaI GCGC 4 cut(s) 107, 219, 571, 664
GluI GCNGC 3 cut(s) 132, 227, 487
GsaI CCCAGC 2 cut(s) 226, 433
HaeII RGCGCY 2 cut(s) 573, 666
HaeIII GGCC 5 cut(s) 270, 282, 387, 423, 486
HapII CCGG 6 cut(s) 75, 424, 573, 588, 695, 707
HgaI GACGC 3 cut(s) 23, 137, 209
HhaI GCGC 4 cut(s) 108, 220, 572, 665
Hin1I GRCGYC 4 cut(s) 15, 129, 201, 570
Hin1II CATG 2 cut(s) 250, 753
Hin6I GCGC 4 cut(s) 106, 218, 570, 663
HinP1I GCGC 4 cut(s) 106, 218, 570, 663
HincII GTYRAC 2 cut(s) 370, 558
HindII GTYRAC 2 cut(s) 370, 558
HinfI GANTC 7 cut(s) 167, 381, 416, 602, 608, 668, 674
HpaII CCGG 6 cut(s) 75, 424, 573, 588, 695, 707
HphI GGTGA 3 cut(s) 174, 541, 634
Hpy166II GTNNAC 3 cut(s) 370, 475, 558
Hpy188I TCNGA 3 cut(s) 607, 673, 687
Hpy188III TCNNGA 6 cut(s) 208, 352, 466, 617, 713, 750
Hpy8I GTNNAC 3 cut(s) 370, 475, 558
Hpy99I CGWCG 7 cut(s) 17, 27, 113, 122, 416, 562, 565
HpyCH4III ACNGT 2 cut(s) 472, 565
HpyCH4IV ACGT 3 cut(s) 285, 440, 651
HpyCH4V TGCA 3 cut(s) 297, 480, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 393, 486
HpyF3I CTNAG 3 cut(s) 92, 719, 734
HpySE526I ACGT 3 cut(s) 285, 440, 651
Hsp92I GRCGYC 4 cut(s) 15, 129, 201, 570
Hsp92II CATG 2 cut(s) 250, 753
HspAI GCGC 4 cut(s) 106, 218, 570, 663
KasI GGCGCC 1 cut(s) 569
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 9, 697
LmnI GCTCC 2 cut(s) 453, 660
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 4 cut(s) 306, 366, 528, 540
MaeII ACGT 3 cut(s) 285, 440, 651
MaeIII GTNAC 1 cut(s) 397
MalI GATC 2 cut(s) 11, 699
MbiI CCGCTC 2 cut(s) 448, 463
MboI GATC 2 cut(s) 9, 697
MboII GAAGA 4 cut(s) 168, 256, 556, 718
MhlI GDGCHC 3 cut(s) 98, 345, 651
MluCI AATT 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 570
MlyI GAGTC 4 cut(s) 425, 611, 662, 683
MmeI TCCRAC 2 cut(s) 579, 585
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 690
MspI CCGG 6 cut(s) 75, 424, 573, 588, 695, 707
MspR9I CCNGG 5 cut(s) 574, 589, 695, 707, 708
MvnI CGCG 4 cut(s) 108, 218, 396, 503
MwoI GCNNNNNNNGC 3 cut(s) 226, 393, 486
NaeI GCCGGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 570
NciI CCSGG 5 cut(s) 574, 589, 695, 707, 708
NcoI CCATGG 1 cut(s) 246
NdeII GATC 2 cut(s) 9, 697
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 250, 753
NlaIV GGNNCC 4 cut(s) 79, 259, 428, 571
NmeAIII GCCGAG 1 cut(s) 258
PaeR7I CTCGAG 2 cut(s) 338, 404
PagI TCATGA 1 cut(s) 749
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 411, 554
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 167, 381, 608
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 3 cut(s) 133, 228, 488
PleI GAGTC 4 cut(s) 424, 610, 662, 682
PluTI GGCGCC 1 cut(s) 573
PmaCI CACGTG 3 cut(s) 286, 441, 652
PmlI CACGTG 3 cut(s) 286, 441, 652
PpsI GAGTC 4 cut(s) 424, 610, 662, 682
Ppu21I YACGTR 3 cut(s) 286, 441, 652
PshAI GACNNNNGTC 1 cut(s) 563
Psp124BI GAGCTC 1 cut(s) 345
PspCI CACGTG 3 cut(s) 286, 441, 652
PspFI CCCAGC 2 cut(s) 222, 429
PspN4I GGNNCC 4 cut(s) 79, 259, 428, 571
PspPI GGNCC 4 cut(s) 421, 426, 468, 738
PspXI VCTCGAGB 2 cut(s) 338, 404
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 593, 704
RsaNI GTAC 2 cut(s) 592, 703
SacI GAGCTC 1 cut(s) 345
SalI GTCGAC 1 cut(s) 556
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 3 cut(s) 132, 227, 487
Sau3AI GATC 2 cut(s) 9, 697
Sau96I GGNCC 4 cut(s) 421, 426, 468, 738
SchI GAGTC 4 cut(s) 425, 611, 662, 683
ScrFI CCNGG 5 cut(s) 574, 589, 695, 707, 708
SduI GDGCHC 3 cut(s) 98, 345, 651
SfaNI GCATC 4 cut(s) 306, 366, 528, 540
SfoI GGCGCC 1 cut(s) 571
Sfr274I CTCGAG 2 cut(s) 338, 404
SinI GGWCC 3 cut(s) 426, 468, 738
SlaI CTCGAG 2 cut(s) 338, 404
SmaI CCCGGG 1 cut(s) 708
SmlI CTYRAG 2 cut(s) 338, 404
SmoI CTYRAG 2 cut(s) 338, 404
Sse9I AATT 1 cut(s) 533
SsiI CCGC 9 cut(s) 72, 132, 274, 310, 394, 446, 461, 487, 503
SspDI GGCGCC 1 cut(s) 569
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 5 cut(s) 572, 587, 693, 705, 706
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 472, 565
TaiI ACGT 3 cut(s) 288, 443, 654
TaqI TCGA 8 cut(s) 12, 25, 117, 209, 239, 339, 405, 557
TasI AATT 1 cut(s) 533
TauI GCSGC 2 cut(s) 134, 489
TfiI GAWTC 3 cut(s) 167, 381, 608
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 2 cut(s) 482, 727
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 2 cut(s) 11, 445
TspMI CCCGGG 1 cut(s) 706
TspRI CASTG 2 cut(s) 482, 727
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 426, 468, 738
XhoI CTCGAG 2 cut(s) 338, 404
XmaI CCCGGG 1 cut(s) 706
XmiI GTMKAC 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.