RLG00000024669

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016161
Physical Location & Seq
Forward (+)
38032221 .. 38033052
832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024669

Sequence Viewer

Length: 735 bp
ATGACCAAGATCGATTCCCTCCGTCGATTCCTCCTCCCTTGCTTCGCCCCCTCCTCCCCGGCCGCCGCCTCCACCTCCGCCACCACCAAGAAGCGCCTCAGCACCTCCCTCCGCGACGACATCGTCGACGACCAAGAACCCGCCCAAGACTCCGACCCTTCCTCCCCCACCGGCTCCGCCACGTCAGCTCCCTCCGCCGCCCAGCCCCGGCCCTCGAAGTCGATGGTGATCGGCACCATCTTCGGCCACCGCCGCGGCCACGTCTGGTTCTGCGTCCAGCACGACCGCCTCTCGACCCGACCCGCGCTCCTCCTGGAGCTCTCCATCCTGACCCACCAGCTCGTCAAGGAAATGCGGTTCGGTTTGGTCCGGATCACCCTTGAGTGCGACGACCGCTCCTCCGATCTCGCCACGTGTCCTCTCCGGTCCGTCCCGGTCTGGGCGCTGCACTGCAACGGCCGCAAGCTCGGGTTCGCCGCCAGGAGGAAAGCCGGCGACAAAGTCCGCCTGATGCTGAAGGCCATGGAGTCAACGACCGTCGGAGCCGGGGCGTTGCCAGCCGGGTTCGGGTTCGGGTCCGGGTCGTCGGACTCGGAGGGCCCGGTTATGTACATGAGGTCGAATTACGAGCACGTGGTTGGGAGCGCCGACTCGGAGTCGTTTCATCTGATCAACCCGGATCAGTTCCCGGGTCAAGAACTCAGTGTCTTCTTGCTCAGGTCCAGAAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

245

Amino Acids

26.48

Weight (kDa)

9.09

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 76 - 240 3.5e-58 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 233
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 126
AccII CGCG 3 cut(s) 114, 255, 305
AccIII TCCGGA 1 cut(s) 369
AclWI GGATC 2 cut(s) 380, 687
AcoI YGGCCR 4 cut(s) 60, 244, 256, 457
AcuI CTGAAG 1 cut(s) 536
AcvI CACGTG 2 cut(s) 414, 634
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 4 cut(s) 207, 439, 483, 567
AflIII ACRYGT 1 cut(s) 413
AhdI GACNNNNNGTC 1 cut(s) 655
AjiI CACGTC 2 cut(s) 183, 262
AjnI CCWGG 2 cut(s) 312, 479
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 4 cut(s) 188, 319, 340, 466
AluI AGCT 4 cut(s) 188, 319, 340, 466
Alw21I GWGCWC 2 cut(s) 321, 633
AlwI GGATC 2 cut(s) 380, 687
Ama87I CYCGRG 2 cut(s) 467, 688
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 7 cut(s) 60, 209, 244, 256, 457, 519, 598
ApaI GGGCCC 1 cut(s) 602
ApeKI GCWGC 1 cut(s) 445
AspLEI GCGC 4 cut(s) 96, 307, 445, 647
AspS9I GGNCC 7 cut(s) 210, 367, 426, 576, 598, 599, 720
AsuHPI GGTGA 2 cut(s) 238, 367
AvaI CYCGRG 2 cut(s) 467, 688
AvaII GGWCC 4 cut(s) 367, 426, 576, 720
BaeGI GKGCMC 1 cut(s) 602
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 321, 602
BbrPI CACGTG 2 cut(s) 414, 634
BbsI GAAGAC 1 cut(s) 700
Bbv12I GWGCWC 2 cut(s) 321, 633
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 432
BccI CCATC 3 cut(s) 217, 245, 332
BceAI ACGGC 1 cut(s) 472
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 2 cut(s) 314, 481
BclI TGATCA 1 cut(s) 669
BfoI RGCGCY 3 cut(s) 97, 446, 648
BisI GCNGC 8 cut(s) 63, 66, 198, 253, 256, 446, 460, 477
BlsI GCNGC 8 cut(s) 64, 67, 199, 254, 257, 447, 461, 478
Bme18I GGWCC 4 cut(s) 367, 426, 576, 720
BmeRI GACNNNNNGTC 1 cut(s) 655
BmeT110I CYCGRG 2 cut(s) 467, 688
BmgBI CACGTC 2 cut(s) 183, 262
BmgT120I GGNCC 7 cut(s) 210, 367, 426, 576, 598, 599, 720
BmiI GGNNCC 5 cut(s) 175, 235, 544, 577, 600
BmsI GCATC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 700
BpmI CTGGAG 1 cut(s) 335
Bpu10I CCTNAGC 2 cut(s) 98, 716
BpuEI CTTGAG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 12
BsaAI YACGTR 2 cut(s) 414, 634
BsaBI GATNNNNATC 1 cut(s) 227
BsaJI CCNNGG 6 cut(s) 57, 206, 253, 522, 546, 688
BsaWI WCCGGW 2 cut(s) 369, 423
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 439, 483, 567
Bse118I RCCGGY 2 cut(s) 170, 491
Bse8I GATNNNNATC 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 369
BseBI CCWGG 2 cut(s) 314, 481
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 6 cut(s) 57, 206, 253, 522, 546, 688
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 4 cut(s) 207, 439, 483, 567
BseMII CTCAG 3 cut(s) 112, 715, 730
BseRI GAGGAG 4 cut(s) 23, 43, 299, 388
BseSI GKGCMC 1 cut(s) 602
BseX3I CGGCCG 2 cut(s) 60, 457
BseXI GCAGC 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 3 cut(s) 114, 255, 305
Bsh1285I CGRYCG 5 cut(s) 63, 286, 394, 460, 537
BshFI GGCC 7 cut(s) 62, 211, 246, 258, 459, 521, 600
BshNI GGYRCC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 5 cut(s) 63, 286, 394, 460, 537
BsiHKAI GWGCWC 2 cut(s) 321, 633
BsiHKCI CYCGRG 2 cut(s) 467, 688
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 4 cut(s) 207, 439, 483, 567
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 7 cut(s) 62, 211, 246, 258, 459, 521, 600
BsoBI CYCGRG 2 cut(s) 467, 688
Bsp120I GGGCCC 1 cut(s) 598
Bsp1286I GDGCHC 3 cut(s) 321, 602, 633
Bsp13I TCCGGA 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 609
Bsp143I GATC 6 cut(s) 9, 228, 372, 403, 669, 679
Bsp19I CCATGG 1 cut(s) 522
BspANI GGCC 7 cut(s) 62, 211, 246, 258, 459, 521, 600
BspCNI CTCAG 3 cut(s) 111, 714, 729
BspDI ATCGAT 1 cut(s) 12
BspEI TCCGGA 1 cut(s) 369
BspFNI CGCG 3 cut(s) 114, 255, 305
BspLI GGNNCC 5 cut(s) 175, 235, 544, 577, 600
BspPI GGATC 2 cut(s) 380, 687
BspT107I GGYRCC 1 cut(s) 233
BsrBI CCGCTC 1 cut(s) 396
BsrFI RCCGGY 2 cut(s) 170, 491
BsrGI TGTACA 1 cut(s) 609
BssAI RCCGGY 2 cut(s) 170, 491
BssECI CCNNGG 6 cut(s) 57, 206, 253, 522, 546, 688
BssMI GATC 6 cut(s) 9, 228, 372, 403, 669, 679
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 2 cut(s) 314, 481
Bst4CI ACNGT 1 cut(s) 538
BstAUI TGTACA 1 cut(s) 609
BstBAI YACGTR 2 cut(s) 414, 634
BstC8I GCNNGC 3 cut(s) 464, 493, 558
BstDEI CTNAG 3 cut(s) 98, 701, 716
BstDSI CCRYGG 2 cut(s) 253, 522
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 3 cut(s) 114, 255, 305
BstH2I RGCGCY 3 cut(s) 97, 446, 648
BstHHI GCGC 4 cut(s) 96, 307, 445, 647
BstKTI GATC 6 cut(s) 12, 231, 375, 406, 672, 682
BstMBI GATC 6 cut(s) 9, 228, 372, 403, 669, 679
BstMCI CGRYCG 5 cut(s) 63, 286, 394, 460, 537
BstMWI GCNNNNNNNGC 6 cut(s) 185, 194, 252, 393, 459, 557
BstNI CCWGG 2 cut(s) 314, 481
BstSLI GKGCMC 1 cut(s) 602
BstUI CGCG 3 cut(s) 114, 255, 305
BstV1I GCAGC 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 700
BstZI CGGCCG 2 cut(s) 60, 457
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 7 cut(s) 62, 211, 246, 258, 459, 521, 600
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 2 cut(s) 253, 522
BtrI CACGTC 2 cut(s) 183, 262
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 448, 709
Cac8I GCNNGC 3 cut(s) 464, 493, 558
CfoI GCGC 4 cut(s) 96, 307, 445, 647
Cfr10I RCCGGY 2 cut(s) 170, 491
Cfr13I GGNCC 7 cut(s) 210, 367, 426, 576, 598, 599, 720
Cfr42I CCGCGG 1 cut(s) 256
Cfr9I CCCGGG 1 cut(s) 688
ClaI ATCGAT 1 cut(s) 12
CpoI CGGWCCG 1 cut(s) 426
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 610
CspI CGGWCCG 1 cut(s) 426
CviAII CATG 2 cut(s) 523, 613
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 3 cut(s) 98, 701, 716
DpnI GATC 6 cut(s) 11, 230, 374, 405, 671, 681
DpnII GATC 6 cut(s) 9, 228, 372, 403, 669, 679
DrdI GACNNNNNNGTC 1 cut(s) 122
DriI GACNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 4 cut(s) 60, 244, 256, 457
EagI CGGCCG 2 cut(s) 60, 457
Eam1105I GACNNNNNGTC 1 cut(s) 655
EciI GGCGGA 4 cut(s) 67, 166, 184, 494
Ecl136II GAGCTC 1 cut(s) 319
EclXI CGGCCG 2 cut(s) 60, 457
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 2 cut(s) 321, 602
Eco47I GGWCC 4 cut(s) 367, 426, 576, 720
Eco52I CGGCCG 2 cut(s) 60, 457
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 536
Eco72I CACGTG 2 cut(s) 414, 634
Eco88I CYCGRG 2 cut(s) 467, 688
EcoICRI GAGCTC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 2 cut(s) 312, 479
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 2 cut(s) 321, 602
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 2 cut(s) 526, 616
FaiI YATR 4 cut(s) 524, 608, 614, 733
FaqI GGGAC 1 cut(s) 416
FatI CATG 2 cut(s) 522, 612
FauI CCCGC 2 cut(s) 148, 310
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 8 cut(s) 63, 66, 198, 253, 256, 446, 460, 477
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 2 cut(s) 321, 602
Fsp4HI GCNGC 8 cut(s) 63, 66, 198, 253, 256, 446, 460, 477
GlaI GCGC 4 cut(s) 95, 306, 444, 646
GluI GCNGC 8 cut(s) 63, 66, 198, 253, 256, 446, 460, 477
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 3 cut(s) 97, 446, 648
HaeIII GGCC 7 cut(s) 62, 211, 246, 258, 459, 521, 600
HgaI GACGC 1 cut(s) 262
HhaI GCGC 4 cut(s) 96, 307, 445, 647
Hin1II CATG 2 cut(s) 526, 616
Hin6I GCGC 4 cut(s) 94, 305, 443, 645
HinP1I GCGC 4 cut(s) 94, 305, 443, 645
HincII GTYRAC 2 cut(s) 127, 531
HindII GTYRAC 2 cut(s) 127, 531
HinfI GANTC 7 cut(s) 14, 27, 149, 527, 590, 650, 656
HphI GGTGA 2 cut(s) 238, 367
Hpy166II GTNNAC 2 cut(s) 127, 531
Hpy188I TCNGA 7 cut(s) 154, 403, 542, 589, 595, 655, 669
Hpy188III TCNNGA 5 cut(s) 292, 328, 370, 695, 723
Hpy8I GTNNAC 2 cut(s) 127, 531
Hpy99I CGWCG 7 cut(s) 27, 119, 128, 131, 392, 542, 589
HpyAV CCTTC 2 cut(s) 168, 511
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 4 cut(s) 182, 261, 413, 633
HpyCH4V TGCA 2 cut(s) 448, 453
HpyF10VI GCNNNNNNNGC 6 cut(s) 185, 194, 252, 393, 459, 557
HpyF3I CTNAG 3 cut(s) 98, 701, 716
HpySE526I ACGT 4 cut(s) 182, 261, 413, 633
Hsp92II CATG 2 cut(s) 526, 616
HspAI GCGC 4 cut(s) 94, 305, 443, 645
Kpn2I TCCGGA 1 cut(s) 369
KroI GCCGGC 1 cut(s) 491
KroNI GCCGGC 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 6 cut(s) 9, 228, 372, 403, 669, 679
LmnI GCTCC 7 cut(s) 179, 193, 312, 316, 401, 542, 642
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 1 cut(s) 501
MaeII ACGT 4 cut(s) 182, 261, 413, 633
MalI GATC 6 cut(s) 11, 230, 374, 405, 671, 681
MbiI CCGCTC 1 cut(s) 396
MboI GATC 6 cut(s) 9, 228, 372, 403, 669, 679
MboII GAAGA 2 cut(s) 232, 700
MhlI GDGCHC 3 cut(s) 321, 602, 633
MluCI AATT 1 cut(s) 622
MlyI GAGTC 5 cut(s) 143, 536, 584, 644, 665
MmeI TCCRAC 3 cut(s) 177, 520, 567
MroI TCCGGA 1 cut(s) 369
MroNI GCCGGC 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 255
MvaI CCWGG 2 cut(s) 314, 481
MvnI CGCG 3 cut(s) 114, 255, 305
MwoI GCNNNNNNNGC 6 cut(s) 185, 194, 252, 393, 459, 557
NaeI GCCGGC 1 cut(s) 493
NcoI CCATGG 1 cut(s) 522
NdeII GATC 6 cut(s) 9, 228, 372, 403, 669, 679
NgoMIV GCCGGC 1 cut(s) 491
NlaIII CATG 2 cut(s) 526, 616
NlaIV GGNNCC 5 cut(s) 175, 235, 544, 577, 600
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 14, 27
PflFI GACNNNGTC 2 cut(s) 122, 500
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 8 cut(s) 64, 67, 199, 254, 257, 447, 461, 478
PleI GAGTC 5 cut(s) 143, 535, 584, 644, 664
PmaCI CACGTG 2 cut(s) 414, 634
PmlI CACGTG 2 cut(s) 414, 634
PpsI GAGTC 5 cut(s) 143, 535, 584, 644, 664
Ppu21I YACGTR 2 cut(s) 414, 634
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 312, 479
PspCI CACGTG 2 cut(s) 414, 634
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 2 cut(s) 312, 479
PspN4I GGNNCC 5 cut(s) 175, 235, 544, 577, 600
PspOMI GGGCCC 1 cut(s) 598
PspPI GGNCC 7 cut(s) 210, 367, 426, 576, 598, 599, 720
PsyI GACNNNGTC 2 cut(s) 122, 500
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 321
SacII CCGCGG 1 cut(s) 256
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 8 cut(s) 63, 66, 198, 253, 256, 446, 460, 477
Sau3AI GATC 6 cut(s) 9, 228, 372, 403, 669, 679
Sau96I GGNCC 7 cut(s) 210, 367, 426, 576, 598, 599, 720
SchI GAGTC 5 cut(s) 143, 536, 584, 644, 665
SduI GDGCHC 3 cut(s) 321, 602, 633
SfaNI GCATC 1 cut(s) 501
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SgrDI CGTCGACG 1 cut(s) 125
SinI GGWCC 4 cut(s) 367, 426, 576, 720
SmaI CCCGGG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 1 cut(s) 622
SstI GAGCTC 1 cut(s) 321
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 4 cut(s) 185, 264, 416, 636
TaqI TCGA 7 cut(s) 12, 25, 126, 215, 221, 293, 620
TasI AATT 1 cut(s) 622
TatI WGTACW 1 cut(s) 609
TauI GCSGC 7 cut(s) 65, 68, 200, 255, 258, 462, 479
TfiI GAWTC 2 cut(s) 14, 27
TscAI CASTG 2 cut(s) 455, 709
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 2 cut(s) 11, 418
TspMI CCCGGG 1 cut(s) 688
TspRI CASTG 2 cut(s) 455, 709
Tth111I GACNNNGTC 2 cut(s) 122, 500
VpaK11BI GGWCC 4 cut(s) 367, 426, 576, 720
XmaI CCCGGG 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.