Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Reverse (-)

15861688 .. 15864128

Gene Structure 2441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTCGATGGAGCTCAGAGTGCTCTTAACACTGCAACCACTGTTCATAGTAGCGTCGTCATGACGCAGATTAAGCCGCAGGCAAAGCTAGGAACCTTCCAGAATCTCCTCGCTGGTGGTATTGCCGGCGCCATTAGCAAGACATGTACCGCTCCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGCAGTGTTAAGCCGTCCAAACTTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTGGAAAGGAAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAACTTCTATGCATATGAGAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTTATAGGAAATACGAGTGGCAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATTACAGCTGCTACAGCTACATATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGGAATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGAATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGCTATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCATTCTCATAGGCCAAATGATTCGGATTTGGTTGTTTCTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAGAGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGGCTTCAAAGGGATATACAGAGGAATATTGCCTGAATATTACAAAGTAGTTCCTGGCGTTGGCATCGTCTTCATGACATACGATGCTTTGCGGAGACTCTTAACTTCTCTCCCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

337

Amino Acids

36.59

Weight (kDa)

9.78

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	39 - 133	5.5e-21	Mitochondrial carrier protein
Mito_carr	PF00153	147 - 235	5.9e-26	Mitochondrial carrier protein
Mito_carr	PF00153	242 - 333	1.7e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	674
AciI	CCGC	5 cut(s)	29, 104, 177, 672, 985
AclWI	GGATC	1 cut(s)	801
AcsI	RAATTY	2 cut(s)	316, 600
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	6 cut(s)	175, 333, 380, 411, 580, 677
AfiI	CCNNNNNNNGG	1 cut(s)	953
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	394, 399, 774, 874, 886, 901
AjnI	CCWGG	2 cut(s)	555, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	9 cut(s)	41, 115, 269, 485, 494, 758, 764, 779, 827
AluI	AGCT	9 cut(s)	41, 115, 269, 485, 494, 758, 764, 779, 827
Alw21I	GWGCWC	2 cut(s)	43, 52
Alw26I	GTCTC	1 cut(s)	982
AlwI	GGATC	1 cut(s)	801
AoxI	GGCC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	485, 530
ApoI	RAATTY	2 cut(s)	316, 600
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	955
Bbv12I	GWGCWC	2 cut(s)	43, 52
BbvI	GCAGC	2 cut(s)	472, 517
BccI	CCATC	2 cut(s)	29, 206
BceAI	ACGGC	2 cut(s)	231, 275
BciT130I	CCWGG	2 cut(s)	557, 948
BcoDI	GTCTC	1 cut(s)	982
BfaI	CTAG	3 cut(s)	15, 116, 755
BfmI	CTRYAG	3 cut(s)	327, 351, 489
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	4 cut(s)	104, 486, 531, 672
BlsI	GCNGC	4 cut(s)	105, 487, 532, 673
Bme1390I	CCNGG	2 cut(s)	557, 948
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	2 cut(s)	121, 157
BmrFI	CCNGG	2 cut(s)	557, 948
BmsI	GCATC	3 cut(s)	210, 966, 967
BpiI	GAAGAC	1 cut(s)	955
BpmI	CTGGAG	2 cut(s)	768, 780
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	953
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	404, 859
BseBI	CCWGG	2 cut(s)	557, 948
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	953
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	404, 859
BseRI	GAGGAG	2 cut(s)	125, 171
BseXI	GCAGC	2 cut(s)	472, 517
BsgI	GTGCAG	2 cut(s)	255, 516
Bsh1236I	CGCG	1 cut(s)	674
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	712
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	2 cut(s)	43, 52
BsiSI	CCGG	1 cut(s)	153
BsiWI	CGTACG	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	953
BsmAI	GTCTC	1 cut(s)	982
BsmI	GAATGC	3 cut(s)	547, 700, 816
BsnI	GGCC	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	43, 52
Bsp143I	GATC	2 cut(s)	508, 793
BspACI	CCGC	5 cut(s)	29, 104, 177, 672, 985
BspANI	GGCC	1 cut(s)	712
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	674
BspHI	TCATGA	2 cut(s)	87, 966
BspLI	GGNNCC	2 cut(s)	121, 157
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	801
BspQI	GCTCTTC	1 cut(s)	829
BspT107I	GGYRCC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	404, 859
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	2 cut(s)	508, 793
BssNAI	GTATAC	1 cut(s)	847
BssNI	GRCGYC	1 cut(s)	156
Bst1107I	GTATAC	1 cut(s)	847
Bst2UI	CCWGG	2 cut(s)	557, 948
Bst4CI	ACNGT	2 cut(s)	70, 328
Bst6I	CTCTTC	2 cut(s)	588, 829
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	108, 154, 190
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	674
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	511, 796
BstMAI	GTCTC	1 cut(s)	982
BstMBI	GATC	2 cut(s)	508, 793
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 100, 112, 162, 185, 220, 491
BstNI	CCWGG	2 cut(s)	557, 948
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	555, 946
BstSFI	CTRYAG	3 cut(s)	327, 351, 489
BstUI	CGCG	1 cut(s)	674
BstV1I	GCAGC	2 cut(s)	472, 517
BstV2I	GAAGAC	1 cut(s)	955
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BstZ17I	GTATAC	1 cut(s)	847
BsuRI	GGCC	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	2 cut(s)	57, 243
BtsIMutI	CAGTG	4 cut(s)	57, 66, 243, 852
Cac8I	GCNNGC	3 cut(s)	108, 154, 190
CciI	TCATGA	2 cut(s)	87, 966
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	3 cut(s)	20, 70, 100
Csp6I	GTAC	6 cut(s)	174, 332, 379, 410, 579, 676
CviAII	CATG	3 cut(s)	88, 171, 967
CviQI	GTAC	6 cut(s)	174, 332, 379, 410, 579, 676
DdeI	CTNAG	1 cut(s)	42
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	2 cut(s)	510, 795
DpnII	GATC	2 cut(s)	508, 793
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	588, 829
EarI	CTCTTC	2 cut(s)	588, 829
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	647
Eco53kI	GAGCTC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	555, 946
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaeI	CATG	3 cut(s)	91, 174, 970
FatI	CATG	3 cut(s)	87, 170, 966
FauNDI	CATATG	2 cut(s)	370, 584
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	104, 486, 531, 672
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	4 cut(s)	104, 486, 531, 672
FspBI	CTAG	3 cut(s)	15, 116, 755
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	4 cut(s)	104, 486, 531, 672
GsuI	CTGGAG	2 cut(s)	768, 780
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	712
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	3 cut(s)	20, 70, 100
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	91, 174, 970
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	8 cut(s)	18, 130, 340, 520, 680, 719, 858, 990
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	4 cut(s)	10, 334, 358, 847
Hpy188I	TCNGA	5 cut(s)	45, 229, 444, 724, 892
Hpy188III	TCNNGA	5 cut(s)	88, 127, 517, 747, 967
Hpy8I	GTNNAC	4 cut(s)	10, 334, 358, 847
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	5 cut(s)	133, 224, 284, 815, 887
HpyCH4III	ACNGT	2 cut(s)	70, 328
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 100, 112, 162, 185, 220, 491
HpyF3I	CTNAG	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	91, 174, 970
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	508, 793
LguI	GCTCTTC	1 cut(s)	829
LmnI	GCTCC	4 cut(s)	38, 184, 761, 824
Lsp1109I	GCAGC	2 cut(s)	472, 517
LweI	GCATC	3 cut(s)	210, 966, 967
MaeI	CTAG	3 cut(s)	15, 116, 755
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	510, 795
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	2 cut(s)	508, 793
MboII	GAAGA	6 cut(s)	605, 762, 816, 819, 846, 955
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	2 cut(s)	43, 52
MluCI	AATT	7 cut(s)	316, 394, 477, 546, 600, 664, 689
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	5 cut(s)	27, 514, 689, 852, 984
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	9 cut(s)	146, 192, 203, 280, 515, 531, 589, 743, 908
Mph1103I	ATGCAT	1 cut(s)	370
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	4 cut(s)	54, 99, 242, 995
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	557, 948
Mva1269I	GAATGC	3 cut(s)	547, 700, 816
MvaI	CCWGG	2 cut(s)	557, 948
MvnI	CGCG	1 cut(s)	674
MwoI	GCNNNNNNNGC	7 cut(s)	47, 100, 112, 162, 185, 220, 491
NaeI	GCCGGC	1 cut(s)	154
NarI	GGCGCC	1 cut(s)	156
NdeI	CATATG	2 cut(s)	370, 584
NdeII	GATC	2 cut(s)	508, 793
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	91, 174, 970
NlaIV	GGNNCC	2 cut(s)	121, 157
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	174
PagI	TCATGA	2 cut(s)	87, 966
PciI	ACATGT	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	675
PctI	GAATGC	3 cut(s)	547, 700, 816
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	130, 340, 719
Pfl23II	CGTACG	1 cut(s)	675
PflFI	GACNNNGTC	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	105, 487, 532, 673
PleI	GAGTC	5 cut(s)	26, 514, 688, 852, 984
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	5 cut(s)	26, 514, 688, 852, 984
PscI	ACATGT	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	555, 946
PspGI	CCWGG	2 cut(s)	555, 946
PspLI	CGTACG	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	121, 157
PspPI	GGNCC	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	793
PsyI	GACNNNGTC	1 cut(s)	651
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	6 cut(s)	175, 333, 380, 411, 580, 677
RsaNI	GTAC	6 cut(s)	174, 332, 379, 410, 579, 676
SacI	GAGCTC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	829
SaqAI	TTAA	4 cut(s)	54, 99, 242, 995
SatI	GCNGC	4 cut(s)	104, 486, 531, 672
Sau3AI	GATC	2 cut(s)	508, 793
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	5 cut(s)	27, 514, 689, 852, 984
ScrFI	CCNGG	2 cut(s)	557, 948
SduI	GDGCHC	2 cut(s)	43, 52
SfaNI	GCATC	3 cut(s)	210, 966, 967
SfcI	CTRYAG	3 cut(s)	327, 351, 489
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	647
Sse9I	AATT	7 cut(s)	316, 394, 477, 546, 600, 664, 689
SsiI	CCGC	5 cut(s)	29, 104, 177, 672, 985
SspDI	GGCGCC	1 cut(s)	155
SspI	AATATT	2 cut(s)	921, 932
SspMI	CTAG	3 cut(s)	15, 116, 755
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	555, 946
TaaI	ACNGT	2 cut(s)	70, 328
TaqI	TCGA	2 cut(s)	33, 507
TasI	AATT	7 cut(s)	316, 394, 477, 546, 600, 664, 689
TatI	WGTACW	2 cut(s)	331, 378
TauI	GCSGC	2 cut(s)	106, 674
TfiI	GAWTC	3 cut(s)	130, 340, 719
Tru1I	TTAA	4 cut(s)	54, 99, 242, 995
Tru9I	TTAA	4 cut(s)	54, 99, 242, 995
TscAI	CASTG	4 cut(s)	64, 73, 243, 859
TseI	GCWGC	2 cut(s)	485, 530
TspDTI	ATGAA	4 cut(s)	17, 62, 701, 955
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	4 cut(s)	64, 73, 243, 859
Tth111I	GACNNNGTC	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	316, 600
XceI	RCATGY	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	3 cut(s)	15, 116, 755
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.