Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Reverse (-)

38039103 .. 38041748

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTATGGAAGCTCGGGTTGGCGTTGTAGAAGGAGGCCAGAGAGCCCTGAACTCAGCTCTGAATCAGCAACCCAAGCAGTCCCTGAATCCCCAATCCCAGATAGGCGCCGTGAATCAGCTCTTGGCCGGTGGAATTGCTGGTGCGTTTAGCAAAACCTGTACCGCACCACTTGCTCGCCTCACCATCCTCTTTCAGGTACAAGGAATGCATTCTGATGTTTCAGCATTGAGTAAGGCGAGCATATGGCGAGAGGCTTCACGTATTGCCAATGAGGAAGGTTTTAGAGCATTTTGGAGAGGCAATCTCGTGACTATTGCTCATCGTCTTCCATATTCTTCAGTCAGCTTCTATGCTTATGAACGCTACAAGAAATTGTTGCATTCAACTATTGGTGAAGATCTTAGGGGTAATGCAACTGCCGGTATGTGTGTACGTTTTCTTGGTGGTGGGATGGCAGGTATTACAGCTGCCTCAGCTACATATCCACTAGATCTTGTGAGGACACGTCTAGCAGCTCAGAGAAATGCACTATACTACAGAGGCATCGGGCATGCATTTCATACAATTTGCAGAGAAGAAGGATTTTTGGGATTGTATAAAGGACTTGGAGCAACTCTGTTGGGTGTTGGACCCAGCATAGCAATCAGCTTCTCAGTTTATGAGGCTTTGAGGTCTTTTTGGCAGTCTGAAAGCAACATTCCCTCTAGATCTGGTGAGGCGAAGGATGCAATTGGAAGGGGCTGGCGGTCGTGCCCGTGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

256

Amino Acids

27.52

Weight (kDa)

9.74

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 128	2.1e-21	Mitochondrial carrier protein
Mito_carr	PF00153	144 - 230	9e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	2 cut(s)	165, 748
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	3 cut(s)	163, 201, 435
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	387
AjiI	CACGTC	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	3 cut(s)	35, 107, 139
AluBI	AGCT	8 cut(s)	14, 59, 121, 348, 470, 479, 518, 651
AluI	AGCT	8 cut(s)	14, 59, 121, 348, 470, 479, 518, 651
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	37, 126
ApeKI	GCWGC	2 cut(s)	470, 515
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	3 cut(s)	175, 407, 728
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	457, 527
BccI	CCATC	2 cut(s)	194, 448
BceAI	ACGGC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	491, 512, 708
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	449
BglII	AGATCT	3 cut(s)	400, 493, 710
BisI	GCNGC	2 cut(s)	471, 516
BlsI	GCNGC	2 cut(s)	472, 517
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	2 cut(s)	109, 634
BmsI	GCATC	2 cut(s)	555, 718
BpiI	GAAGAC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	475
BsaAI	YACGTR	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	2 cut(s)	128, 422
BseGI	GGATG	3 cut(s)	186, 459, 733
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	4 cut(s)	69, 489, 533, 669
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	457, 527
BseYI	CCCAGC	1 cut(s)	635
Bsh1285I	CGRYCG	1 cut(s)	752
BshFI	GGCC	2 cut(s)	39, 128
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	752
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	129, 423
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	3 cut(s)	211, 213, 382
BsnI	GGCC	2 cut(s)	39, 128
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	49, 758
Bsp143I	GATC	3 cut(s)	400, 493, 710
BspACI	CCGC	2 cut(s)	165, 748
BspANI	GGCC	2 cut(s)	39, 128
BspCNI	CTCAG	4 cut(s)	68, 488, 532, 668
BspLI	GGNNCC	2 cut(s)	109, 634
BspMI	ACCTGC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	2 cut(s)	128, 422
BssAI	RCCGGY	2 cut(s)	128, 422
BssMI	GATC	3 cut(s)	400, 493, 710
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	178, 241, 555, 746
BstDEI	CTNAG	5 cut(s)	55, 404, 475, 519, 655
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	186, 459, 733
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	403, 496, 713
BstMBI	GATC	3 cut(s)	400, 493, 710
BstMCI	CGRYCG	1 cut(s)	752
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 173, 476, 728
BstNSI	RCATGY	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	758
BstV1I	GCAGC	2 cut(s)	457, 527
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	3 cut(s)	400, 493, 710
BstYI	RGATCY	3 cut(s)	400, 493, 710
BsuRI	GGCC	2 cut(s)	39, 128
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	186, 459, 733
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	4 cut(s)	178, 241, 555, 746
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	2 cut(s)	128, 422
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	3 cut(s)	162, 200, 434
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	3 cut(s)	162, 200, 434
DdeI	CTNAG	5 cut(s)	55, 404, 475, 519, 655
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	402, 495, 712
DpnII	GATC	3 cut(s)	400, 493, 710
EaeI	YGGCCR	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoT22I	ATGCAT	2 cut(s)	213, 559
EcoT38I	GRGCYC	1 cut(s)	49
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	1 cut(s)	557
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	553
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	471, 516
FokI	GGATG	3 cut(s)	173, 466, 740
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	471, 516
FspBI	CTAG	3 cut(s)	491, 512, 708
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	471, 516
GsaI	CCCAGC	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	39, 128
HapII	CCGG	2 cut(s)	129, 423
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	557
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	64, 88, 115
HpaII	CCGG	2 cut(s)	129, 423
HphI	GGTGA	3 cut(s)	175, 407, 728
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	4 cut(s)	63, 217, 522, 691
Hpy188III	TCNNGA	2 cut(s)	310, 708
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	5 cut(s)	26, 272, 575, 718, 732
HpyCH4IV	ACGT	3 cut(s)	262, 436, 508
HpyCH4V	TGCA	7 cut(s)	211, 382, 416, 530, 557, 573, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 173, 476, 728
HpyF3I	CTNAG	5 cut(s)	55, 404, 475, 519, 655
HpySE526I	ACGT	3 cut(s)	262, 436, 508
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	557
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	400, 493, 710
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	2 cut(s)	457, 527
LweI	GCATC	2 cut(s)	555, 718
MaeI	CTAG	3 cut(s)	491, 512, 708
MaeII	ACGT	3 cut(s)	262, 436, 508
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	402, 495, 712
MboI	GATC	3 cut(s)	400, 493, 710
MboII	GAAGA	4 cut(s)	320, 330, 410, 590
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	3 cut(s)	400, 493, 710
MhlI	GDGCHC	2 cut(s)	49, 758
MluCI	AATT	4 cut(s)	135, 374, 567, 732
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	610
Mph1103I	ATGCAT	2 cut(s)	213, 559
MroXI	GAANNNNTTC	1 cut(s)	211
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	129, 423
MunI	CAATTG	1 cut(s)	732
Mva1269I	GAATGC	3 cut(s)	211, 213, 382
MwoI	GCNNNNNNNGC	4 cut(s)	76, 173, 476, 728
NarI	GGCGCC	1 cut(s)	108
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	3 cut(s)	400, 493, 710
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	2 cut(s)	109, 634
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	2 cut(s)	213, 559
NspI	RCATGY	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	557
PctI	GAATGC	3 cut(s)	211, 213, 382
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	64, 88, 115
PkrI	GCNGC	2 cut(s)	472, 517
PluTI	GGCGCC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	109, 634
PspPI	GGNCC	1 cut(s)	632
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	3 cut(s)	400, 493, 710
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	163, 201, 435
RsaNI	GTAC	3 cut(s)	162, 200, 434
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	2 cut(s)	471, 516
Sau3AI	GATC	3 cut(s)	400, 493, 710
Sau96I	GGNCC	1 cut(s)	632
SduI	GDGCHC	2 cut(s)	49, 758
SfaNI	GCATC	2 cut(s)	555, 718
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	135, 374, 567, 732
SsiI	CCGC	2 cut(s)	165, 748
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	3 cut(s)	491, 512, 708
TaiI	ACGT	3 cut(s)	265, 439, 511
TasI	AATT	4 cut(s)	135, 374, 567, 732
TfiI	GAWTC	3 cut(s)	64, 88, 115
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	470, 515
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	375, 551
VpaK11BI	GGWCC	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	707
XceI	RCATGY	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	3 cut(s)	491, 512, 708
Zsp2I	ATGCAT	2 cut(s)	213, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.