Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Reverse (-)

15524823 .. 15526472

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAGCTCGAGTTGGGGTGGTGGTGGAAGGAAAGCAGAGAGCTTCGAATTTAGCGCAGGGAGGCGTGGTGGATGGGGGCGCCAGGAAATTCTTGCAGCAGCAGAGCCAGGCGAAGCAGTCTCTGAATCAGCAGTCCCAGATAGGGACGGTGAACCAGCTCTTAGCCGGCGGTATCGCCGGTGCTTTTGGAAAAACCTGCACTGCACCTCTTGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCACTCTGACATTGCAGCATTGAGTAAGGCTAGCATATGGCATGAGGCTTCACGTATTATCAATGAAGAAGGGTTTAAAGCATTTTGGAGAGGCAATCTCGTTACCATTGCTCATCGTCTTCCGTATTCTGCCGTCAGCTTCTATGCTTATGAACGCTACAAGACCTTGCTGCATTCACTTGGTGGTGAAAATTTTAGGGGTAATGCAAGTACTGACATGTGTGTGCACTTTCTCGGTGGTGGGATGGCAGGGTTAACCGCTGCCTCAGCCACATATCCATCGATCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

180

Amino Acids

19.1

Weight (kDa)

9.59

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	2 cut(s)	171, 507
AcsI	RAATTY	3 cut(s)	49, 89, 439
AcyI	GRCGYC	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	144, 235
AflIII	ACRYGT	1 cut(s)	465
AjnI	CCWGG	2 cut(s)	83, 108
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	8, 44, 160, 387
AluI	AGCT	4 cut(s)	8, 44, 160, 387
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	126
Alw44I	GTGCAC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	5 cut(s)	97, 100, 263, 418, 509
ApoI	RAATTY	3 cut(s)	49, 89, 439
AspLEI	GCGC	2 cut(s)	58, 83
AsuHPI	GGTGA	3 cut(s)	163, 214, 446
AsuII	TTCGAA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	514
BbvI	GCAGC	5 cut(s)	109, 112, 275, 405, 496
BccI	CCATC	4 cut(s)	68, 233, 487, 535
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	85, 110
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	5 cut(s)	98, 101, 264, 419, 510
BlsI	GCNGC	5 cut(s)	99, 102, 265, 420, 511
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	85, 110
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	2 cut(s)	85, 110
BmtI	GCTAGC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	359
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
Bpu10I	CCTNAGC	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 235
Bse118I	RCCGGY	2 cut(s)	167, 179
Bse3DI	GCAATG	2 cut(s)	258, 354
BseBI	CCWGG	2 cut(s)	85, 110
BseCI	ATCGAT	1 cut(s)	530
BseGI	GGATG	3 cut(s)	79, 225, 498
BseLI	CCNNNNNNNGG	2 cut(s)	144, 235
BseMI	GCAATG	2 cut(s)	258, 354
BseMII	CTCAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	5 cut(s)	109, 112, 275, 405, 496
BsgI	GTGCAG	2 cut(s)	184, 189
BshNI	GGYRCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	168, 180
BslFI	GGGAC	2 cut(s)	121, 160
BslI	CCNNNNNNNGG	2 cut(s)	144, 235
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	121, 160
BsmI	GAATGC	2 cut(s)	252, 421
BsoBI	CYCGRG	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	2 cut(s)	171, 507
BspCNI	CTCAG	1 cut(s)	527
BspDI	ATCGAT	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	258, 354
BsrFI	RCCGGY	2 cut(s)	167, 179
BssAI	RCCGGY	2 cut(s)	167, 179
BssMI	GATC	1 cut(s)	531
BssNI	GRCGYC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	85, 110
Bst4CI	ACNGT	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	2 cut(s)	212, 247
BstBAI	YACGTR	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	169, 217, 280
BstDEI	CTNAG	2 cut(s)	163, 514
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	79, 225, 498
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	58, 83
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 247, 515
BstNI	CCWGG	2 cut(s)	85, 110
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	83, 108
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	5 cut(s)	109, 112, 275, 405, 496
BstV2I	GAAGAC	1 cut(s)	359
Bsu15I	ATCGAT	1 cut(s)	530
BsuTUI	ATCGAT	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	79, 225, 498
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	169, 217, 280
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	2 cut(s)	58, 83
Cfr10I	RCCGGY	2 cut(s)	167, 179
ClaI	ATCGAT	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	2 cut(s)	290, 466
CviJI	RGCY	9 cut(s)	8, 44, 108, 160, 167, 278, 296, 387, 518
CviKI_1	RGCY	9 cut(s)	8, 44, 108, 160, 167, 278, 296, 387, 518
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	163, 514
DinI	GGCGCC	1 cut(s)	82
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
DraI	TTTAAA	1 cut(s)	325
DraIII	CACNNNGTG	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	83, 108
EgeI	GGCGCC	1 cut(s)	82
EheI	GGCGCC	1 cut(s)	82
FaeI	CATG	2 cut(s)	293, 469
FaiI	YATR	7 cut(s)	284, 286, 291, 393, 399, 467, 523
FaqI	GGGAC	2 cut(s)	121, 160
FatI	CATG	2 cut(s)	289, 465
FauNDI	CATATG	1 cut(s)	284
Fnu4HI	GCNGC	5 cut(s)	98, 101, 264, 419, 510
FokI	GGATG	3 cut(s)	86, 212, 505
Fsp4HI	GCNGC	5 cut(s)	98, 101, 264, 419, 510
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	57, 82
GluI	GCNGC	5 cut(s)	98, 101, 264, 419, 510
HaeII	RGCGCY	1 cut(s)	84
HapII	CCGG	2 cut(s)	168, 180
HhaI	GCGC	2 cut(s)	58, 83
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	293, 469
Hin6I	GCGC	2 cut(s)	56, 81
HinP1I	GCGC	2 cut(s)	56, 81
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	127
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	2 cut(s)	168, 180
HphI	GGTGA	3 cut(s)	163, 214, 446
Hpy166II	GTNNAC	3 cut(s)	154, 475, 504
Hpy188I	TCNGA	2 cut(s)	126, 256
Hpy8I	GTNNAC	3 cut(s)	154, 475, 504
HpyAV	CCTTC	2 cut(s)	23, 311
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	9 cut(s)	97, 201, 206, 241, 250, 263, 421, 455, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 247, 515
HpyF3I	CTNAG	2 cut(s)	163, 514
HpySE526I	ACGT	1 cut(s)	301
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	293, 469
HspAI	GCGC	2 cut(s)	56, 81
KasI	GGCGCC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	531
Lsp1109I	GCAGC	5 cut(s)	109, 112, 275, 405, 496
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	2 cut(s)	326, 359
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	49, 89, 439
Mly113I	GGCGCC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	56, 219, 230, 239, 286, 332, 523
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	2 cut(s)	324, 503
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	2 cut(s)	168, 180
MspR9I	CCNGG	2 cut(s)	85, 110
Mva1269I	GAATGC	2 cut(s)	252, 421
MvaI	CCWGG	2 cut(s)	85, 110
MwoI	GCNNNNNNNGC	3 cut(s)	212, 247, 515
NaeI	GCCGGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	81
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	1 cut(s)	531
NgoMIV	GCCGGC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	293, 469
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	469
NspV	TTCGAA	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	9
PciI	ACATGT	1 cut(s)	465
PctI	GAATGC	2 cut(s)	252, 421
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	99, 102, 265, 420, 511
PluTI	GGCGCC	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	302
PscI	ACATGT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	83, 108
PspGI	CCWGG	2 cut(s)	83, 108
PspN4I	GGNNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	324, 503
SatI	GCNGC	5 cut(s)	98, 101, 264, 419, 510
Sau3AI	GATC	1 cut(s)	531
ScaI	AGTACT	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	85, 110
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	10, 46, 162, 200, 211, 240, 304, 389, 416
SfoI	GGCGCC	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	47
SgrAI	CRCCGGYG	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	49, 89, 439
SsiI	CCGC	2 cut(s)	171, 507
SspDI	GGCGCC	1 cut(s)	80
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	83, 108
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	10, 47, 530
TasI	AATT	3 cut(s)	49, 89, 439
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	324, 503
Tru9I	TTAA	2 cut(s)	324, 503
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	5 cut(s)	97, 100, 263, 418, 509
TspDTI	ATGAA	2 cut(s)	327, 414
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	473
XagI	CCTNNNNNAGG	1 cut(s)	233
XapI	RAATTY	3 cut(s)	49, 89, 439
XceI	RCATGY	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.