Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Forward (+)

7775272 .. 7778876

Gene Structure 3605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12820.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGTATGGAAGCTCGTGTTGGAGTTGTAGAAGGAGGGCAGAGAGCTCTGAATTCAGCTCTCAATCAGCAAACCAAGCAGTCCCTCAATCCCCAGTCCCAGGTTGGCACCCTCAATCAGCTCTTGGCTGGTGGGATTGCTGGTGCCTTTAGCAAAACCTGTACCGCTCCACTTGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCATTCTGATGTTTCAGCATTGAGTAAGGCGAGCATATGGCGAGAGGCTACACGTATTGTCAATGAGGAAGGTTTTAGAGCATTTTGGAGAGGCAATCTCGTTACTATTGCTCATCGTCTTCCATATTCTTCAGTCAGCTTCTATGCTTATGAACGCTACAAGAAATTGTTGCATTCAACTTTTGGTGAAGATCTTAGGGGTAATGCAACTACCGATATGTGTGTACACTTTCTCGGTGGTGGGATGGCTGGTATAACAGCTGCCTCAGCTACATATCCACTAGATCTTGTGAGGACACGTCTATCAGCTCAGAAAAATGTAGTATACTACAGAGGCATCGGACATGCATTTCATACAATTTGCAGAGAAGAAAGATTTTTGGGATTGTATAAAGGACTTGGAGCAACTCTATTGGGTGTTGGACCCAGCATAGCAATCAGTTTCTCCGTTTATGAGGCTTTGAGGTCTTTTTGGCAGTCTGAAAGGCCCAATGATTCTACAGTCATGGTGAGTCTTGCTTGCGGCAGTCTTTCAGGCATTGCGTCATCAACAGCAACATTCCCTCTAGATCTGGTGAGGCGAAGAATGCAATTAGAAGGGGCCGGTGGTCGGGCCCGTGTCTATAACACTGGCATAGTAGGAACTTTTAGGCACATAATCCGGAACGAAGGCCTGCGTGGCTTGTACAGAGGAATTCTGCCAGAATATTACAAGGTTGTTCCCAGTGTAGGCATTGTCTTCATGACGTACGAGACATTGAAAATGTTTCTGTCACGCATCCACACAAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

335

Amino Acids

36.65

Weight (kDa)

9.83

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 129	8.8e-22	Mitochondrial carrier protein
Mito_carr	PF00153	144 - 230	8.2e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 143
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	870
AciI	CCGC	2 cut(s)	165, 732
AcsI	RAATTY	2 cut(s)	52, 903
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	4 cut(s)	163, 435, 896, 959
AfiI	CCNNNNNNNGG	4 cut(s)	100, 196, 819, 938
AflIII	ACRYGT	2 cut(s)	260, 506
AgsI	TTSAA	2 cut(s)	387, 970
AjiI	CACGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AleI	CACNNNNGTG	1 cut(s)	996
AluBI	AGCT	8 cut(s)	14, 47, 59, 121, 348, 470, 479, 518
AluI	AGCT	8 cut(s)	14, 47, 59, 121, 348, 470, 479, 518
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	956
Aor13HI	TCCGGA	1 cut(s)	870
AoxI	GGCC	4 cut(s)	695, 810, 822, 880
ApaI	GGGCCC	1 cut(s)	826
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	2 cut(s)	52, 903
Asp700I	GAANNNNTTC	1 cut(s)	211
AspS9I	GGNCC	5 cut(s)	632, 696, 810, 822, 823
AsuHPI	GGTGA	4 cut(s)	175, 407, 730, 796
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	826
BanI	GGYRCC	2 cut(s)	107, 143
BanII	GRGCYC	2 cut(s)	49, 826
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	320, 940
Bbv12I	GWGCWC	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	194, 448
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	3 cut(s)	491, 776, 1003
BfmI	CTRYAG	2 cut(s)	538, 708
BglI	GCCNNNNNGGC	1 cut(s)	888
BglII	AGATCT	3 cut(s)	400, 493, 778
BisI	GCNGC	2 cut(s)	471, 733
BlsI	GCNGC	2 cut(s)	472, 734
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	5 cut(s)	632, 696, 810, 822, 823
BmiI	GGNNCC	5 cut(s)	109, 145, 634, 811, 824
BmrFI	CCNGG	1 cut(s)	101
BmrI	ACTGGG	2 cut(s)	88, 927
BmsI	GCATC	2 cut(s)	555, 996
BmuI	ACTGGG	2 cut(s)	88, 927
BpiI	GAAGAC	2 cut(s)	320, 940
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	475
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	870
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 196, 819, 938
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	3 cut(s)	94, 844, 933
Bse3DI	GCAATG	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	3 cut(s)	186, 459, 987
BseLI	CCNNNNNNNGG	4 cut(s)	100, 196, 819, 938
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	2 cut(s)	489, 533
BseNI	ACTGG	3 cut(s)	94, 844, 933
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	635
BshFI	GGCC	4 cut(s)	697, 812, 824, 882
BshNI	GGYRCC	2 cut(s)	107, 143
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	813, 871
BsiWI	CGTACG	1 cut(s)	957
BslFI	GGGAC	2 cut(s)	67, 82
BslI	CCNNNNNNNGG	4 cut(s)	100, 196, 819, 938
BsmAI	GTCTC	1 cut(s)	956
BsmFI	GGGAC	2 cut(s)	67, 82
BsmI	GAATGC	4 cut(s)	211, 213, 382, 801
BsnI	GGCC	4 cut(s)	697, 812, 824, 882
Bsp120I	GGGCCC	1 cut(s)	822
Bsp1286I	GDGCHC	2 cut(s)	49, 826
Bsp13I	TCCGGA	1 cut(s)	870
Bsp1407I	TGTACA	2 cut(s)	433, 894
Bsp143I	GATC	3 cut(s)	400, 493, 778
BspACI	CCGC	2 cut(s)	165, 732
BspANI	GGCC	4 cut(s)	697, 812, 824, 882
BspCNI	CTCAG	2 cut(s)	488, 532
BspEI	TCCGGA	1 cut(s)	870
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	5 cut(s)	109, 145, 634, 811, 824
BspT107I	GGYRCC	2 cut(s)	107, 143
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	812
BsrGI	TGTACA	2 cut(s)	433, 894
BsrI	ACTGG	3 cut(s)	94, 844, 933
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	400, 493, 778
BssNAI	GTATAC	1 cut(s)	535
BssSI	CACGAG	1 cut(s)	15
Bst1107I	GTATAC	1 cut(s)	535
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	712
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstAUI	TGTACA	2 cut(s)	433, 894
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	178, 241, 730, 884
BstDEI	CTNAG	3 cut(s)	404, 475, 519
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	186, 459, 987
BstKTI	GATC	3 cut(s)	403, 496, 781
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	3 cut(s)	400, 493, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 173, 208, 476, 796, 888
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	2 cut(s)	538, 708
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	320, 940
BstX2I	RGATCY	3 cut(s)	400, 493, 778
BstYI	RGATCY	3 cut(s)	400, 493, 778
BstZ17I	GTATAC	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	697, 812, 824, 882
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	186, 459, 987
BtsIMutI	CAGTG	2 cut(s)	837, 940
Cac8I	GCNNGC	4 cut(s)	178, 241, 730, 884
CciI	TCATGA	1 cut(s)	951
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	5 cut(s)	632, 696, 810, 822, 823
CseI	GACGC	1 cut(s)	741
Csp6I	GTAC	4 cut(s)	162, 434, 895, 958
CviAII	CATG	3 cut(s)	554, 715, 952
CviQI	GTAC	4 cut(s)	162, 434, 895, 958
DdeI	CTNAG	3 cut(s)	404, 475, 519
DpnI	GATC	3 cut(s)	402, 495, 780
DpnII	GATC	3 cut(s)	400, 493, 778
Ecl136II	GAGCTC	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	882
Eco24I	GRGCYC	2 cut(s)	49, 826
Eco47I	GGWCC	1 cut(s)	632
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRI	GAATTC	2 cut(s)	52, 903
EcoRII	CCWGG	1 cut(s)	99
EcoT22I	ATGCAT	2 cut(s)	213, 559
EcoT38I	GRGCYC	2 cut(s)	49, 826
FaeI	CATG	3 cut(s)	557, 718, 955
FaqI	GGGAC	2 cut(s)	67, 82
FatI	CATG	3 cut(s)	553, 714, 951
FauNDI	CATATG	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	471, 733
FokI	GGATG	3 cut(s)	173, 466, 974
FriOI	GRGCYC	2 cut(s)	49, 826
Fsp4HI	GCNGC	2 cut(s)	471, 733
FspBI	CTAG	3 cut(s)	491, 776, 1003
GluI	GCNGC	2 cut(s)	471, 733
GsaI	CCCAGC	1 cut(s)	639
HaeIII	GGCC	4 cut(s)	697, 812, 824, 882
HapII	CCGG	2 cut(s)	813, 871
HgaI	GACGC	1 cut(s)	741
Hin1II	CATG	3 cut(s)	557, 718, 955
HinfI	GANTC	2 cut(s)	704, 721
HpaII	CCGG	2 cut(s)	813, 871
HphI	GGTGA	4 cut(s)	175, 407, 730, 796
Hpy166II	GTNNAC	3 cut(s)	434, 436, 535
Hpy188I	TCNGA	5 cut(s)	51, 217, 522, 551, 691
Hpy188III	TCNNGA	3 cut(s)	776, 871, 952
Hpy8I	GTNNAC	3 cut(s)	434, 436, 535
HpyAV	CCTTC	4 cut(s)	26, 272, 800, 872
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4IV	ACGT	3 cut(s)	262, 508, 956
HpyCH4V	TGCA	7 cut(s)	202, 211, 382, 416, 557, 573, 799
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 173, 208, 476, 796, 888
HpyF3I	CTNAG	3 cut(s)	404, 475, 519
HpySE526I	ACGT	3 cut(s)	262, 508, 956
Hsp92II	CATG	3 cut(s)	557, 718, 955
Kpn2I	TCCGGA	1 cut(s)	870
Kzo9I	GATC	3 cut(s)	400, 493, 778
LmnI	GCTCC	2 cut(s)	172, 611
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	555, 996
MaeI	CTAG	3 cut(s)	491, 776, 1003
MaeII	ACGT	3 cut(s)	262, 508, 956
MaeIII	GTNAC	3 cut(s)	310, 981, 998
MalI	GATC	3 cut(s)	402, 495, 780
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	3 cut(s)	400, 493, 778
MboII	GAAGA	6 cut(s)	320, 330, 410, 590, 804, 940
MflI	RGATCY	3 cut(s)	400, 493, 778
MhlI	GDGCHC	2 cut(s)	49, 826
MluCI	AATT	5 cut(s)	52, 374, 567, 800, 903
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	1 cut(s)	610
Mph1103I	ATGCAT	2 cut(s)	213, 559
MroI	TCCGGA	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	211
MslI	CAYNNNNRTG	2 cut(s)	216, 996
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	2 cut(s)	813, 871
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	4 cut(s)	211, 213, 382, 801
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	6 cut(s)	76, 173, 208, 476, 796, 888
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	3 cut(s)	400, 493, 778
NlaIII	CATG	3 cut(s)	557, 718, 955
NlaIV	GGNNCC	5 cut(s)	109, 145, 634, 811, 824
NmuCI	GTSAC	2 cut(s)	981, 998
NsiI	ATGCAT	2 cut(s)	213, 559
NspI	RCATGY	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	996
PagI	TCATGA	1 cut(s)	951
PceI	AGGCCT	1 cut(s)	882
PctI	GAATGC	4 cut(s)	211, 213, 382, 801
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	704
Pfl23II	CGTACG	1 cut(s)	957
PkrI	GCNGC	2 cut(s)	472, 734
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
Ppu21I	YACGTR	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	99
PspLI	CGTACG	1 cut(s)	957
PspN4I	GGNNCC	5 cut(s)	109, 145, 634, 811, 824
PspOMI	GGGCCC	1 cut(s)	822
PspPI	GGNCC	5 cut(s)	632, 696, 810, 822, 823
PsuI	RGATCY	3 cut(s)	400, 493, 778
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	163, 435, 896, 959
RsaNI	GTAC	4 cut(s)	162, 434, 895, 958
RseI	CAYNNNNRTG	2 cut(s)	216, 996
SacI	GAGCTC	1 cut(s)	49
SatI	GCNGC	2 cut(s)	471, 733
Sau3AI	GATC	3 cut(s)	400, 493, 778
Sau96I	GGNCC	5 cut(s)	632, 696, 810, 822, 823
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	49, 826
SfaNI	GCATC	2 cut(s)	555, 996
SfcI	CTRYAG	2 cut(s)	538, 708
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	2 cut(s)	216, 996
Sse9I	AATT	5 cut(s)	52, 374, 567, 800, 903
SseBI	AGGCCT	1 cut(s)	882
SsiI	CCGC	2 cut(s)	165, 732
SspI	AATATT	1 cut(s)	917
SspMI	CTAG	3 cut(s)	491, 776, 1003
SstI	GAGCTC	1 cut(s)	49
StuI	AGGCCT	1 cut(s)	882
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	712
TaiI	ACGT	3 cut(s)	265, 511, 959
TasI	AATT	5 cut(s)	52, 374, 567, 800, 903
TatI	WGTACW	2 cut(s)	433, 894
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	1 cut(s)	704
TscAI	CASTG	2 cut(s)	844, 940
TseFI	GTSAC	2 cut(s)	981, 998
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	2 cut(s)	981, 998
TspDTI	ATGAA	3 cut(s)	375, 551, 940
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	2 cut(s)	844, 940
VpaK11BI	GGWCC	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	2 cut(s)	52, 903
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	3 cut(s)	491, 776, 1003
Zsp2I	ATGCAT	2 cut(s)	213, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.