Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Forward (+)

10865104 .. 10868657

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G011190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGCTCGGGTTGGCGTTGTAGAAGGAGGCCAGAGAGCCCTGAACTCAGCTCTGAATCAGCAACCCAAGCAGTCCCTGAATCCCCAATCCCAGATAGGCGCCGTGAATCAGCTCTTGGCCGGTGGAATTGCTGGTGCGTTTAGCAAAACCTGTACCGCACCACTTGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCATTCTGATGTTTCAGCATTGAGTAAGGCGAGCATATGGCGAGAGGCTTCACGTATTGCCAATGAGGAAGGTTTTAGAGCATTCTGGAGAGGCAATCTCGTGACTATTGCTCATCGTCTTCCATATTCTTCAGTCAGCTTCTATGCTTATGAACGCTACAAGAAATTGTTGCATTCAATTATTGGTGAAGATCTTAGGGGTAATGCAACTGCCAATATGTGTGTACACTTTCTTGGTGGTGGGATGGCAGGTATTACAGCTGCCTCAGCTACGTATCCACTAGATCTTGTGAGGACACGTCTAGCAGCTCAGAGAAATGCACTATACTACAGAGGCATCGGGCATGCATTTCATACAATTTGCAGAGAAGAAGGATTTTTGGGATTGTATAAAGGACTTGGAGCAACTCTGTTGGGTGTTGGACCCAGCATAGCAATCAGTTTCTCAGTTTATGAGGCTTTAAGGTCTTTTTGGCAGTCTGAAAGGCCCAACGATTCTACAGTCATGGTGAGTCTTGCTTGCGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACATTCCCTCTAGATCTGGTGAGGCGAAGGATGCAATTGGAAGGGGCTGGCGGTCGTGCCCGTGTCTATAACACTGGCTTATTAGGAACTTTTAGGCACATAATCCAGAATGAAGGCCTGCGGGGCTTGTATAGAGGAATTCTGCCAGAATATTACAAGGTTGTTCCCAGTGTAGGCATTGTGTTCATGACGTATGAGACATTGAAAATGCTTCTGTCACGCATGCAGACAAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

332

Amino Acids

36.17

Weight (kDa)

9.79

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	33 - 126	3.7e-21	Mitochondrial carrier protein
Mito_carr	PF00153	140 - 228	5.3e-25	Mitochondrial carrier protein
Mito_carr	PF00153	234 - 327	1.1e-25	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	4 cut(s)	159, 726, 810, 880
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	897
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	157, 429
AfiI	CCNNNNNNNGG	2 cut(s)	190, 932
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	381, 964
AjiI	CACGTC	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 101, 133
AluBI	AGCT	7 cut(s)	8, 53, 115, 342, 464, 473, 512
AluI	AGCT	7 cut(s)	8, 53, 115, 342, 464, 473, 512
Alw26I	GTCTC	1 cut(s)	950
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	4 cut(s)	31, 120, 689, 874
ApeKI	GCWGC	2 cut(s)	464, 509
ApoI	RAATTY	1 cut(s)	897
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	626, 690
AsuHPI	GGTGA	4 cut(s)	169, 401, 724, 790
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	314
BbvCI	CCTCAGC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	451, 521
BccI	CCATC	2 cut(s)	188, 442
BceAI	ACGGC	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	950
BfaI	CTAG	4 cut(s)	485, 506, 770, 997
BfmI	CTRYAG	2 cut(s)	532, 702
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	882
BglII	AGATCT	3 cut(s)	394, 487, 772
BisI	GCNGC	3 cut(s)	465, 510, 727
BlsI	GCNGC	3 cut(s)	466, 511, 728
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	626, 690
BmiI	GGNNCC	2 cut(s)	103, 628
BmrI	ACTGGG	1 cut(s)	921
BmsI	GCATC	2 cut(s)	549, 780
BmuI	ACTGGG	1 cut(s)	921
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	285, 317
BpmI	CTGGAG	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	469
BsaAI	YACGTR	2 cut(s)	257, 477
BsaHI	GRCGYC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 932
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	838, 927
Bse3DI	GCAATG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	180, 453, 795
BseLI	CCNNNNNNNGG	2 cut(s)	190, 932
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	4 cut(s)	63, 483, 527, 663
BseNI	ACTGG	2 cut(s)	838, 927
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	2 cut(s)	451, 521
BseYI	CCCAGC	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	4 cut(s)	33, 122, 691, 876
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	190, 932
BsmAI	GTCTC	1 cut(s)	950
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	4 cut(s)	205, 207, 284, 376
BsnI	GGCC	4 cut(s)	33, 122, 691, 876
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	43, 820
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	394, 487, 772
BspACI	CCGC	4 cut(s)	159, 726, 810, 880
BspANI	GGCC	4 cut(s)	33, 122, 691, 876
BspCNI	CTCAG	4 cut(s)	62, 482, 526, 662
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	2 cut(s)	103, 628
BspMI	ACCTGC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	838, 927
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	3 cut(s)	394, 487, 772
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	706
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	2 cut(s)	167, 202
BstAUI	TGTACA	1 cut(s)	427
BstBAI	YACGTR	2 cut(s)	257, 477
BstC8I	GCNNGC	7 cut(s)	172, 235, 549, 724, 808, 878, 983
BstDEI	CTNAG	5 cut(s)	49, 398, 469, 513, 649
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	180, 453, 795
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	397, 490, 775
BstMAI	GTCTC	1 cut(s)	950
BstMBI	GATC	3 cut(s)	394, 487, 772
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 167, 202, 470, 790, 882
BstNSI	RCATGY	2 cut(s)	551, 985
BstSFI	CTRYAG	2 cut(s)	532, 702
BstSLI	GKGCMC	1 cut(s)	820
BstSNI	TACGTA	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	451, 521
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	3 cut(s)	394, 487, 772
BstYI	RGATCY	3 cut(s)	394, 487, 772
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	33, 122, 691, 876
BtrI	CACGTC	1 cut(s)	503
BtsCI	GGATG	3 cut(s)	180, 453, 795
BtsIMutI	CAGTG	2 cut(s)	831, 934
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	7 cut(s)	172, 235, 549, 724, 808, 878, 983
CaiI	CAGNNNCTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	626, 690
Csp6I	GTAC	2 cut(s)	156, 428
CviAII	CATG	4 cut(s)	548, 709, 946, 982
CviQI	GTAC	2 cut(s)	156, 428
DdeI	CTNAG	5 cut(s)	49, 398, 469, 513, 649
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	3 cut(s)	396, 489, 774
DpnII	GATC	3 cut(s)	394, 487, 772
EaeI	YGGCCR	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	876
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	897
EcoT22I	ATGCAT	2 cut(s)	207, 553
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
FaeI	CATG	4 cut(s)	551, 712, 949, 985
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	4 cut(s)	547, 708, 945, 981
FauI	CCCGC	1 cut(s)	873
FauNDI	CATATG	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	465, 510, 727
FokI	GGATG	3 cut(s)	167, 460, 802
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	465, 510, 727
FspBI	CTAG	4 cut(s)	485, 506, 770, 997
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	465, 510, 727
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	310
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	4 cut(s)	33, 122, 691, 876
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	551, 712, 949, 985
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	5 cut(s)	58, 82, 109, 698, 715
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	4 cut(s)	169, 401, 724, 790
Hpy166II	GTNNAC	2 cut(s)	428, 430
Hpy188I	TCNGA	4 cut(s)	57, 211, 516, 685
Hpy188III	TCNNGA	5 cut(s)	289, 304, 770, 865, 946
Hpy8I	GTNNAC	2 cut(s)	428, 430
HpyAV	CCTTC	6 cut(s)	20, 266, 569, 780, 794, 866
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	4 cut(s)	256, 476, 502, 950
HpyCH4V	TGCA	9 cut(s)	196, 205, 376, 410, 524, 551, 567, 793, 985
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 167, 202, 470, 790, 882
HpyF3I	CTNAG	5 cut(s)	49, 398, 469, 513, 649
HpySE526I	ACGT	4 cut(s)	256, 476, 502, 950
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	551, 712, 949, 985
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	394, 487, 772
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	2 cut(s)	451, 521
LweI	GCATC	2 cut(s)	549, 780
MaeI	CTAG	4 cut(s)	485, 506, 770, 997
MaeII	ACGT	4 cut(s)	256, 476, 502, 950
MaeIII	GTNAC	3 cut(s)	304, 975, 992
MalI	GATC	3 cut(s)	396, 489, 774
MboI	GATC	3 cut(s)	394, 487, 772
MboII	GAAGA	4 cut(s)	314, 324, 404, 584
MfeI	CAATTG	1 cut(s)	794
MflI	RGATCY	3 cut(s)	394, 487, 772
MhlI	GDGCHC	2 cut(s)	43, 820
MluCI	AATT	6 cut(s)	129, 368, 381, 561, 794, 897
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	604
Mph1103I	ATGCAT	2 cut(s)	207, 553
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	794
Mva1269I	GAATGC	4 cut(s)	205, 207, 284, 376
MwoI	GCNNNNNNNGC	6 cut(s)	70, 167, 202, 470, 790, 882
NarI	GGCGCC	1 cut(s)	102
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	3 cut(s)	394, 487, 772
NlaIII	CATG	4 cut(s)	551, 712, 949, 985
NlaIV	GGNNCC	2 cut(s)	103, 628
NmuCI	GTSAC	3 cut(s)	304, 975, 992
NsiI	ATGCAT	2 cut(s)	207, 553
NspI	RCATGY	2 cut(s)	551, 985
PaeI	GCATGC	2 cut(s)	551, 985
PagI	TCATGA	1 cut(s)	945
PceI	AGGCCT	1 cut(s)	876
PctI	GAATGC	4 cut(s)	205, 207, 284, 376
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	4 cut(s)	58, 82, 109, 698
PkrI	GCNGC	3 cut(s)	466, 511, 728
PleI	GAGTC	1 cut(s)	723
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	723
Ppu21I	YACGTR	2 cut(s)	257, 477
PspFI	CCCAGC	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	103, 628
PspPI	GGNCC	2 cut(s)	626, 690
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	3 cut(s)	394, 487, 772
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	157, 429
RsaNI	GTAC	2 cut(s)	156, 428
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	3 cut(s)	465, 510, 727
Sau3AI	GATC	3 cut(s)	394, 487, 772
Sau96I	GGNCC	2 cut(s)	626, 690
SchI	GAGTC	1 cut(s)	724
SduI	GDGCHC	2 cut(s)	43, 820
SfaNI	GCATC	2 cut(s)	549, 780
SfcI	CTRYAG	2 cut(s)	532, 702
SfoI	GGCGCC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	210
SnaBI	TACGTA	1 cut(s)	477
SphI	GCATGC	2 cut(s)	551, 985
Sse9I	AATT	6 cut(s)	129, 368, 381, 561, 794, 897
SseBI	AGGCCT	1 cut(s)	876
SsiI	CCGC	4 cut(s)	159, 726, 810, 880
SspDI	GGCGCC	1 cut(s)	101
SspI	AATATT	1 cut(s)	911
SspMI	CTAG	4 cut(s)	485, 506, 770, 997
StuI	AGGCCT	1 cut(s)	876
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	4 cut(s)	259, 479, 505, 953
TasI	AATT	6 cut(s)	129, 368, 381, 561, 794, 897
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	4 cut(s)	58, 82, 109, 698
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	2 cut(s)	838, 934
TseFI	GTSAC	3 cut(s)	304, 975, 992
TseI	GCWGC	2 cut(s)	464, 509
Tsp45I	GTSAC	3 cut(s)	304, 975, 992
TspDTI	ATGAA	4 cut(s)	369, 545, 885, 934
TspRI	CASTG	2 cut(s)	838, 934
VpaK11BI	GGWCC	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	897
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	2 cut(s)	551, 985
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	4 cut(s)	485, 506, 770, 997
Zsp2I	ATGCAT	2 cut(s)	207, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.