Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Reverse (-)

19970929 .. 19973769

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAGCTCGAGTCGGTGTAGTGGTGGAAGGAGGACAGAGAGCTCTTAATACAGCCACCACCACCGCCGTTCATAACACCGTCGTAGACGCCGGAAACAGGAAACTTTTACAGCAACAACCACAGACGCAACAGACACAAAGCTGTCATCAACATCACCAAAGTAATAAACAGTCGTTGAATCAGCAGCAAGGCCATTTCGGCACCGTTGAGCGTCTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCGTCTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCCAAACATTTGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGAAAGGAAACTTGGTTACTGTAGCTCATCGGCTTCCTTATGGTGCAGTTAACTTCTATGCATATGAAGAATACAAGACTTTCTTGCACTCGAATCCAGTCTTGCAGAGTTATAAAGGAAATGCGGGTGTGGACATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACAGCTGCTTCAGCTACCTACCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAATTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAATTTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAATCAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGCTCTCTCATAGGCCTAATGATTCAAATGCCGTGGTTAGTCTTGGTTGTGGCAGTCTCTCCGGAATTGTTTCCTCTACAGCGACATTCCCATTGGACCTGGTGAGAAGAAGAATGCAGTTGGAAGGAGCTGGTGGGCGAGCGAGAGTGTATACCACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAGGCATGAGAGGGCTATACAGAGGAATCATACCAGAATACTACAAAGTGGTTCCTGGTGTTGGCATCGCCTTCATGACATTCGAGGAATTGAAGAAGCTCTTATCAACTGTCCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

365

Amino Acids

39.76

Weight (kDa)

9.65

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	68 - 161	5.4e-23	Mitochondrial carrier protein
Mito_carr	PF00153	177 - 263	8.9e-26	Mitochondrial carrier protein
Mito_carr	PF00153	269 - 361	1.5e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	2 cut(s)	87, 932
AccII	CGCG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	842
AciI	CCGC	3 cut(s)	66, 261, 515
AcsI	RAATTY	2 cut(s)	625, 684
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	2 cut(s)	99, 1037
AgsI	TTSAA	5 cut(s)	181, 630, 807, 958, 1069
AjnI	CCWGG	2 cut(s)	879, 1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
Alw21I	GWGCWC	2 cut(s)	46, 537
Alw26I	GTCTC	2 cut(s)	758, 842
Alw44I	GTGCAC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	842
AoxI	GGCC	2 cut(s)	193, 794
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	4 cut(s)	187, 317, 569, 755
ApoI	RAATTY	2 cut(s)	625, 684
Asp700I	GAANNNNTTC	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	731, 877
AsuHPI	GGTGA	2 cut(s)	149, 895
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	731, 877
BaeGI	GKGCMC	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	46, 537
BbvI	GCAGC	4 cut(s)	199, 304, 556, 767
BceAI	ACGGC	3 cut(s)	53, 623, 797
BciT130I	CCWGG	2 cut(s)	881, 1032
BcoDI	GTCTC	2 cut(s)	758, 842
BfmI	CTRYAG	2 cut(s)	411, 858
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	4 cut(s)	188, 318, 570, 756
BlsI	GCNGC	4 cut(s)	189, 319, 571, 757
Bme1390I	CCNGG	2 cut(s)	881, 1032
Bme18I	GGWCC	2 cut(s)	731, 877
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	731, 877
BmiI	GGNNCC	2 cut(s)	205, 1029
BmrFI	CCNGG	2 cut(s)	881, 1032
BmsI	GCATC	1 cut(s)	1050
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	813
BsaWI	WCCGGW	1 cut(s)	842
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 1037
Bse118I	RCCGGY	2 cut(s)	224, 236
Bse1I	ACTGG	1 cut(s)	488
BseAI	TCCGGA	1 cut(s)	842
BseBI	CCWGG	2 cut(s)	881, 1032
BseDI	CCNNGG	1 cut(s)	813
BseLI	CCNNNNNNNGG	2 cut(s)	99, 1037
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	4 cut(s)	199, 304, 556, 767
BsgI	GTGCAG	2 cut(s)	456, 600
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	195, 796
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	46, 537
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	4 cut(s)	93, 225, 237, 843
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	2 cut(s)	99, 1037
BsmAI	GTCTC	2 cut(s)	758, 842
BsmFI	GGGAC	1 cut(s)	1073
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	2 cut(s)	195, 796
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	46, 537
Bsp13I	TCCGGA	1 cut(s)	842
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	3 cut(s)	66, 261, 515
BspANI	GGCC	2 cut(s)	195, 796
BspEI	TCCGGA	1 cut(s)	842
BspFNI	CGCG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	1050
BspLI	GGNNCC	2 cut(s)	205, 1029
BspT107I	GGYRCC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	2 cut(s)	224, 236
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	2 cut(s)	224, 236
BssECI	CCNNGG	1 cut(s)	813
BssMI	GATC	1 cut(s)	592
BssNAI	GTATAC	1 cut(s)	933
BssNI	GRCGYC	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	933
Bst2UI	CCWGG	2 cut(s)	881, 1032
Bst4CI	ACNGT	5 cut(s)	82, 174, 208, 412, 1087
Bst6I	CTCTTC	1 cut(s)	672
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	238, 654, 921
BstDSI	CCRYGG	1 cut(s)	813
BstFNI	CGCG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	2 cut(s)	758, 842
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 269, 575
BstNI	CCWGG	2 cut(s)	881, 1032
BstNSI	RCATGY	2 cut(s)	258, 656
BstSCI	CCNGG	2 cut(s)	879, 1030
BstSFI	CTRYAG	2 cut(s)	411, 858
BstSLI	GKGCMC	1 cut(s)	537
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	4 cut(s)	199, 304, 556, 767
BstV2I	GAAGAC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstZ17I	GTATAC	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	195, 796
BtgI	CCRYGG	1 cut(s)	813
BtgZI	GCGATG	1 cut(s)	1027
Cac8I	GCNNGC	3 cut(s)	238, 654, 921
CciI	TCATGA	1 cut(s)	1050
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	2 cut(s)	224, 236
Cfr13I	GGNCC	2 cut(s)	731, 877
CseI	GACGC	3 cut(s)	98, 136, 203
CsiI	ACCWGGT	1 cut(s)	879
Csp6I	GTAC	1 cut(s)	663
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	5 cut(s)	255, 347, 653, 982, 1051
CviQI	GTAC	1 cut(s)	663
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
DraI	TTTAAA	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Ecl136II	GAGCTC	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	731, 877
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	879, 1030
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	5 cut(s)	258, 350, 656, 985, 1054
FalI	AAGNNNNNCTT	4 cut(s)	458, 490, 1061, 1093
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	5 cut(s)	254, 346, 652, 981, 1050
FauI	CCCGC	1 cut(s)	508
FauNDI	CATATG	1 cut(s)	454
FblI	GTMKAC	2 cut(s)	87, 932
Fnu4HI	GCNGC	4 cut(s)	188, 318, 570, 756
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	188, 318, 570, 756
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	4 cut(s)	188, 318, 570, 756
HaeIII	GGCC	2 cut(s)	195, 796
HapII	CCGG	4 cut(s)	93, 225, 237, 843
HgaI	GACGC	3 cut(s)	98, 136, 203
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	258, 350, 656, 985, 1054
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	7 cut(s)	12, 181, 231, 484, 803, 942, 1002
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	4 cut(s)	93, 225, 237, 843
HphI	GGTGA	2 cut(s)	149, 895
Hpy166II	GTNNAC	5 cut(s)	88, 442, 523, 535, 933
Hpy188I	TCNGA	2 cut(s)	294, 313
Hpy188III	TCNNGA	4 cut(s)	325, 590, 843, 1051
Hpy8I	GTNNAC	5 cut(s)	88, 442, 523, 535, 933
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	6 cut(s)	23, 368, 667, 899, 971, 1057
HpyCH4III	ACNGT	5 cut(s)	82, 174, 208, 412, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 269, 575
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	258, 350, 656, 985, 1054
HspAI	GCGC	1 cut(s)	240
Kpn2I	TCCGGA	1 cut(s)	842
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	2 cut(s)	268, 908
Lsp1109I	GCAGC	4 cut(s)	199, 304, 556, 767
LweI	GCATC	1 cut(s)	1050
MabI	ACCWGGT	1 cut(s)	879
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	594
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	1 cut(s)	592
MboII	GAAGA	6 cut(s)	209, 470, 689, 900, 903, 1081
MhlI	GDGCHC	2 cut(s)	46, 537
MluCI	AATT	5 cut(s)	625, 684, 846, 1064, 1093
MlyI	GAGTC	2 cut(s)	21, 936
MmeI	TCCRAC	2 cut(s)	291, 882
MnlI	CCTC	9 cut(s)	26, 276, 364, 597, 673, 865, 980, 992, 1054
Mph1103I	ATGCAT	1 cut(s)	454
MreI	CGCCGGCG	1 cut(s)	236
MroI	TCCGGA	1 cut(s)	842
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	850
MseI	TTAA	6 cut(s)	48, 366, 441, 771, 969, 1096
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	4 cut(s)	93, 225, 237, 843
MspR9I	CCNGG	2 cut(s)	881, 1032
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	2 cut(s)	881, 1032
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	201, 269, 575
NaeI	GCCGGC	1 cut(s)	238
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	1 cut(s)	592
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	5 cut(s)	258, 350, 656, 985, 1054
NlaIV	GGNNCC	2 cut(s)	205, 1029
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	258, 656
PaeI	GCATGC	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	9
PagI	TCATGA	1 cut(s)	1050
PceI	AGGCCT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	900
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	850
PfeI	GAWTC	5 cut(s)	181, 231, 484, 803, 1002
PkrI	GCNGC	4 cut(s)	189, 319, 571, 757
PleI	GAGTC	2 cut(s)	20, 936
PpsI	GAGTC	2 cut(s)	20, 936
PsiI	TTATAA	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	879, 1030
PspGI	CCWGG	2 cut(s)	879, 1030
PspN4I	GGNNCC	2 cut(s)	205, 1029
PspPI	GGNCC	2 cut(s)	731, 877
PspXI	VCTCGAGB	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	6 cut(s)	48, 366, 441, 771, 969, 1096
SatI	GCNGC	4 cut(s)	188, 318, 570, 756
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	2 cut(s)	731, 877
SchI	GAGTC	2 cut(s)	21, 936
ScrFI	CCNGG	2 cut(s)	881, 1032
SduI	GDGCHC	2 cut(s)	46, 537
SexAI	ACCWGGT	1 cut(s)	879
SfaNI	GCATC	1 cut(s)	1050
SfcI	CTRYAG	2 cut(s)	411, 858
Sfr274I	CTCGAG	1 cut(s)	9
SgrAI	CRCCGGYG	2 cut(s)	224, 236
SinI	GGWCC	2 cut(s)	731, 877
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	9, 325
SmoI	CTYRAG	2 cut(s)	9, 325
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	5 cut(s)	625, 684, 846, 1064, 1093
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	3 cut(s)	66, 261, 515
SstI	GAGCTC	1 cut(s)	46
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	2 cut(s)	879, 1030
TaaI	ACNGT	5 cut(s)	82, 174, 208, 412, 1087
TaqI	TCGA	4 cut(s)	10, 482, 591, 1059
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	5 cut(s)	625, 684, 846, 1064, 1093
TfiI	GAWTC	5 cut(s)	181, 231, 484, 803, 1002
Tru1I	TTAA	6 cut(s)	48, 366, 441, 771, 969, 1096
Tru9I	TTAA	6 cut(s)	48, 366, 441, 771, 969, 1096
TseI	GCWGC	4 cut(s)	187, 317, 569, 755
TspDTI	ATGAA	4 cut(s)	62, 363, 471, 1039
TspGWI	ACGGA	1 cut(s)	650
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	731, 877
XapI	RAATTY	2 cut(s)	625, 684
XceI	RCATGY	2 cut(s)	258, 656
XhoI	CTCGAG	1 cut(s)	9
XmiI	GTMKAC	2 cut(s)	87, 932
XmnI	GAANNNNTTC	1 cut(s)	850
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.