MD04G1137900.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
22527078 .. 22530577
3500 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1137900.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGGAAGCTCGAGTTGGGGTGGTGGAAGGAAGGCAGAGAGCTTCGAATTCAGCGCAGGGAGGCGTGGTGGATGGGGGCGCCAGGAAATTCTTGCAGCAGCAGAGCCAGGCGAAGCAGTCTCTGAATCAGCAGTCCCAGATAGGGACGGTGAACCAGCTCTTAGCCGGCGGTATAGCCGGTGCTTTTGGAAAAACCTGCACTGCACCTCTGGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCACTCTGACATTGCAGCATTGAGTAAGGCTAGCATATGGCATGAGGCTTCACGTATTATCAATGAAGAAGGGTTTAAAGCATTTTGGAGAGGCAATCTCGTTACCATTGCTCATCGTCTTCCATATTCTGCCGTCAGCTTCTATGCTTATGAACGCTACAAGACCTTGCTGCATTCACTTGGTGGTGAAAATTTTAGGGGTAATGCAAGTACTGACATGTGTGTGCACTTTCTCGCTGGTGGGATGGCAGGGTTAACCGCTGCCTCAGCCACATATCCACTGGATCTTGTTAGGACACGTCTTGCAGCCCAGAGAAATGCACCATACTACAGAGGTATTGGACATGCATTTCATACAATTTGCAGAGAAGAAGGTTTTTGGGGATTGTATAAAGGACTTGGAGCGACACTGTTGGTTGTGGGACCCAGTATAGCAATAAGCTTCTCTGTTTATGAGGCTTTGAGATCTTTTTGGCAGTCCCAAAGGCCGAATGATTCGACTGTCGTGGTCAGTCTTGCTTGTGGCAGTCTTTCAGGCATTGCCTCATCCACAGCAACATTCCCTCTGGATCTTGTAAGGCGAAGGCTGCAGTTGGAGGGTGCTGGTGGTCTAGCCCGCATCTATAATACGGGCTTACTTGGGACTTTAAGCCATATAACGCGGACTGAAGGCCTGCGGGGCTTGTATAGAGGGATAATGCCAGAATATTACAAGGTCGTTCCCAGTGTAGGCATTGTCTTCATGACTTACGAGACATTGAAAATGCTTTTCGCCCGCATCCAATCAAGTGACTAG

Protein Analysis

347

Amino Acids

37.53

Weight (kDa)

9.76

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 47 - 140 1.6e-21 Mitochondrial carrier protein
Mito_carr PF00153 156 - 242 1.9e-24 Mitochondrial carrier protein
Mito_carr PF00153 248 - 340 1.6e-23 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 1 cut(s) 907
AciI CCGC 6 cut(s) 168, 504, 862, 907, 922, 1021
AclWI GGATC 2 cut(s) 537, 822
AcsI RAATTY 3 cut(s) 46, 86, 436
AcuI CTGAAG 1 cut(s) 933
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 428
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 3 cut(s) 141, 232, 974
AflIII ACRYGT 2 cut(s) 462, 542
AgsI TTSAA 1 cut(s) 1006
AjiI CACGTC 1 cut(s) 545
AjnI CCWGG 2 cut(s) 80, 105
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 5 cut(s) 8, 41, 157, 384, 687
AluI AGCT 5 cut(s) 8, 41, 157, 384, 687
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 123, 992
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 2 cut(s) 537, 822
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 2 cut(s) 731, 916
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 7 cut(s) 94, 97, 260, 415, 506, 551, 832
ApoI RAATTY 3 cut(s) 46, 86, 436
AspLEI GCGC 2 cut(s) 55, 80
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 3 cut(s) 160, 211, 443
AsuII TTCGAA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 668
BaeGI GKGCMC 1 cut(s) 474
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 356, 976
Bbv12I GWGCWC 1 cut(s) 474
BbvCI CCTCAGC 1 cut(s) 511
BbvI GCAGC 7 cut(s) 106, 109, 272, 402, 493, 563, 819
BccI CCATC 3 cut(s) 65, 230, 484
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 2 cut(s) 82, 107
BcoDI GTCTC 2 cut(s) 123, 992
BfaI CTAG 3 cut(s) 276, 857, 1039
BfmI CTRYAG 2 cut(s) 574, 833
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 924
BglII AGATCT 1 cut(s) 710
BisI GCNGC 7 cut(s) 95, 98, 261, 416, 507, 552, 833
BlsI GCNGC 7 cut(s) 96, 99, 262, 417, 508, 553, 834
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 82, 107
Bme18I GGWCC 1 cut(s) 668
BmeT110I CYCGRG 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 3 cut(s) 79, 669, 670
BmrFI CCNGG 2 cut(s) 82, 107
BmrI ACTGGG 2 cut(s) 666, 963
BmsI GCATC 2 cut(s) 873, 1032
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 2 cut(s) 666, 963
BpiI GAAGAC 2 cut(s) 356, 976
BplI GAGNNNNNCTC 2 cut(s) 327, 359
Bpu10I CCTNAGC 1 cut(s) 511
Bpu14I TTCGAA 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 232, 974
Bse118I RCCGGY 2 cut(s) 164, 176
Bse1I ACTGG 3 cut(s) 531, 672, 969
Bse3DI GCAATG 3 cut(s) 255, 351, 783
BseBI CCWGG 2 cut(s) 82, 107
BseGI GGATG 5 cut(s) 76, 222, 495, 791, 1023
BseLI CCNNNNNNNGG 3 cut(s) 141, 232, 974
BseMI GCAATG 3 cut(s) 255, 351, 783
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 3 cut(s) 531, 672, 969
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 7 cut(s) 106, 109, 272, 402, 493, 563, 819
BsgI GTGCAG 2 cut(s) 181, 186
Bsh1236I CGCG 1 cut(s) 907
BshFI GGCC 2 cut(s) 733, 918
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 165, 177
BslFI GGGAC 5 cut(s) 118, 157, 681, 709, 901
BslI CCNNNNNNNGG 3 cut(s) 141, 232, 974
BsmAI GTCTC 2 cut(s) 123, 992
BsmFI GGGAC 5 cut(s) 118, 157, 681, 709, 901
BsmI GAATGC 2 cut(s) 249, 418
BsnI GGCC 2 cut(s) 733, 918
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 3 cut(s) 529, 710, 814
BspACI CCGC 6 cut(s) 168, 504, 862, 907, 922, 1021
BspANI GGCC 2 cut(s) 733, 918
BspCNI CTCAG 1 cut(s) 524
BspFNI CGCG 1 cut(s) 907
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 3 cut(s) 79, 669, 670
BspMAI CTGCAG 1 cut(s) 837
BspMI ACCTGC 1 cut(s) 203
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 537, 822
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 3 cut(s) 255, 351, 783
BsrFI RCCGGY 2 cut(s) 164, 176
BsrI ACTGG 3 cut(s) 531, 672, 969
BssAI RCCGGY 2 cut(s) 164, 176
BssMI GATC 3 cut(s) 529, 710, 814
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 82, 107
Bst4CI ACNGT 3 cut(s) 148, 657, 748
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 6 cut(s) 166, 214, 277, 862, 920, 1021
BstDEI CTNAG 2 cut(s) 160, 511
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 5 cut(s) 76, 222, 495, 791, 1023
BstFNI CGCG 1 cut(s) 907
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 55, 80
BstKTI GATC 3 cut(s) 532, 713, 817
BstMAI GTCTC 2 cut(s) 123, 992
BstMBI GATC 3 cut(s) 529, 710, 814
BstMWI GCNNNNNNNGC 5 cut(s) 209, 244, 512, 832, 924
BstNI CCWGG 2 cut(s) 82, 107
BstNSI RCATGY 2 cut(s) 466, 593
BstSCI CCNGG 2 cut(s) 80, 105
BstSFI CTRYAG 2 cut(s) 574, 833
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 1 cut(s) 907
BstV1I GCAGC 7 cut(s) 106, 109, 272, 402, 493, 563, 819
BstV2I GAAGAC 2 cut(s) 356, 976
BstX2I RGATCY 3 cut(s) 529, 710, 814
BstYI RGATCY 3 cut(s) 529, 710, 814
BsuRI GGCC 2 cut(s) 733, 918
BtrI CACGTC 1 cut(s) 545
BtsCI GGATG 5 cut(s) 76, 222, 495, 791, 1023
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 4 cut(s) 198, 524, 653, 976
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 6 cut(s) 166, 214, 277, 862, 920, 1021
CaiI CAGNNNCTG 1 cut(s) 121
CciI TCATGA 1 cut(s) 987
CfoI GCGC 2 cut(s) 55, 80
Cfr10I RCCGGY 2 cut(s) 164, 176
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 456
CviAII CATG 4 cut(s) 287, 463, 590, 988
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 2 cut(s) 160, 511
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 531, 712, 816
DpnII GATC 3 cut(s) 529, 710, 814
DraI TTTAAA 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 428
Eco147I AGGCCT 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 80, 105
EcoT22I ATGCAT 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
FaeI CATG 4 cut(s) 290, 466, 593, 991
FaqI GGGAC 5 cut(s) 118, 157, 681, 709, 901
FatI CATG 4 cut(s) 286, 462, 589, 987
FauI CCCGC 3 cut(s) 869, 915, 1028
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 7 cut(s) 95, 98, 261, 416, 507, 552, 833
FokI GGATG 5 cut(s) 83, 209, 502, 778, 1010
Fsp4HI GCNGC 7 cut(s) 95, 98, 261, 416, 507, 552, 833
FspBI CTAG 3 cut(s) 276, 857, 1039
GlaI GCGC 2 cut(s) 54, 79
GluI GCNGC 7 cut(s) 95, 98, 261, 416, 507, 552, 833
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 2 cut(s) 733, 918
HapII CCGG 2 cut(s) 165, 177
HhaI GCGC 2 cut(s) 55, 80
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 4 cut(s) 290, 466, 593, 991
Hin6I GCGC 2 cut(s) 53, 78
HinP1I GCGC 2 cut(s) 53, 78
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 2 cut(s) 124, 740
HpaI GTTAAC 1 cut(s) 501
HpaII CCGG 2 cut(s) 165, 177
HphI GGTGA 3 cut(s) 160, 211, 443
Hpy166II GTNNAC 3 cut(s) 151, 472, 501
Hpy188I TCNGA 2 cut(s) 123, 253
Hpy188III TCNNGA 2 cut(s) 812, 988
Hpy8I GTNNAC 3 cut(s) 151, 472, 501
HpyAV CCTTC 6 cut(s) 20, 24, 308, 611, 822, 908
HpyCH4III ACNGT 3 cut(s) 148, 657, 748
HpyCH4IV ACGT 2 cut(s) 298, 544
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 244, 512, 832, 924
HpyF3I CTNAG 2 cut(s) 160, 511
HpySE526I ACGT 2 cut(s) 298, 544
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 4 cut(s) 290, 466, 593, 991
HspAI GCGC 2 cut(s) 53, 78
KasI GGCGCC 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 668
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 3 cut(s) 529, 710, 814
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 7 cut(s) 106, 109, 272, 402, 493, 563, 819
LweI GCATC 2 cut(s) 873, 1032
MaeI CTAG 3 cut(s) 276, 857, 1039
MaeII ACGT 2 cut(s) 298, 544
MaeIII GTNAC 2 cut(s) 346, 1034
MalI GATC 3 cut(s) 531, 712, 816
MboI GATC 3 cut(s) 529, 710, 814
MboII GAAGA 4 cut(s) 323, 356, 626, 976
MflI RGATCY 3 cut(s) 529, 710, 814
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 4 cut(s) 46, 86, 436, 603
Mly113I GGCGCC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 595
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 3 cut(s) 321, 500, 893
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 2 cut(s) 165, 177
MspR9I CCNGG 2 cut(s) 82, 107
Mva1269I GAATGC 2 cut(s) 249, 418
MvaI CCWGG 2 cut(s) 82, 107
MvnI CGCG 1 cut(s) 907
MwoI GCNNNNNNNGC 5 cut(s) 209, 244, 512, 832, 924
NaeI GCCGGC 1 cut(s) 166
NarI GGCGCC 1 cut(s) 78
NdeI CATATG 1 cut(s) 281
NdeII GATC 3 cut(s) 529, 710, 814
NgoMIV GCCGGC 1 cut(s) 164
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 290, 466, 593, 991
NlaIV GGNNCC 3 cut(s) 79, 669, 670
NmuCI GTSAC 1 cut(s) 1034
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 2 cut(s) 466, 593
NspV TTCGAA 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 9
PagI TCATGA 1 cut(s) 987
PceI AGGCCT 1 cut(s) 918
PciI ACATGT 1 cut(s) 462
PctI GAATGC 2 cut(s) 249, 418
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 124, 740
PkrI GCNGC 7 cut(s) 96, 99, 262, 417, 508, 553, 834
PluTI GGCGCC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 668
PscI ACATGT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 80, 105
PspGI CCWGG 2 cut(s) 80, 105
PspN4I GGNNCC 3 cut(s) 79, 669, 670
PspPI GGNCC 1 cut(s) 668
PspPPI RGGWCCY 1 cut(s) 668
PspXI VCTCGAGB 1 cut(s) 9
PstI CTGCAG 1 cut(s) 837
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 3 cut(s) 529, 710, 814
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 3 cut(s) 321, 500, 893
SatI GCNGC 7 cut(s) 95, 98, 261, 416, 507, 552, 833
Sau3AI GATC 3 cut(s) 529, 710, 814
Sau96I GGNCC 1 cut(s) 668
ScaI AGTACT 1 cut(s) 457
ScrFI CCNGG 2 cut(s) 82, 107
SduI GDGCHC 1 cut(s) 474
SfaNI GCATC 2 cut(s) 873, 1032
SfcI CTRYAG 2 cut(s) 574, 833
SfoI GGCGCC 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 1 cut(s) 668
SlaI CTCGAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 4 cut(s) 46, 86, 436, 603
SseBI AGGCCT 1 cut(s) 918
SsiI CCGC 6 cut(s) 168, 504, 862, 907, 922, 1021
SspDI GGCGCC 1 cut(s) 77
SspI AATATT 1 cut(s) 953
SspMI CTAG 3 cut(s) 276, 857, 1039
StuI AGGCCT 1 cut(s) 918
StyD4I CCNGG 2 cut(s) 80, 105
TaaI ACNGT 3 cut(s) 148, 657, 748
TaiI ACGT 2 cut(s) 301, 547
TaqI TCGA 3 cut(s) 10, 44, 743
TasI AATT 4 cut(s) 46, 86, 436, 603
TatI WGTACW 1 cut(s) 455
TfiI GAWTC 2 cut(s) 124, 740
Tru1I TTAA 3 cut(s) 321, 500, 893
Tru9I TTAA 3 cut(s) 321, 500, 893
TscAI CASTG 4 cut(s) 205, 531, 660, 976
TseFI GTSAC 1 cut(s) 1034
TseI GCWGC 7 cut(s) 94, 97, 260, 415, 506, 551, 832
Tsp45I GTSAC 1 cut(s) 1034
TspDTI ATGAA 4 cut(s) 324, 411, 587, 976
TspRI CASTG 4 cut(s) 205, 531, 660, 976
VneI GTGCAC 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 668
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 3 cut(s) 46, 86, 436
XceI RCATGY 2 cut(s) 466, 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 3 cut(s) 276, 857, 1039
ZrmI AGTACT 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.