Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010731

Physical Location & Seq

Genomic Coordinates Reverse (-)

25324061 .. 25327250

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G263800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGCTCGAGTTGGGGTGGTAGTGGACGGAAAGCAGAGAGCTTTAAATTCAGCTCAGGGAAGCGTGGTGGATGGAGGTGCCAGGAAATTTTTACAGCAACAGAGCCAAGCCAAGCAGTCTATGAATCAATCGGCTCAGGTAGGCACGGTGAACCAGCTCTTAGCTGGTGGTATTGCTGGGGCTTTTAGCAAAACCTGTACTGCACCTCTTGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCACTCTGATGTTGCAGCATTGAGTAAGGCCAGTATATGGCATGAGGCTTCACGTATTGTAAACGAAGAAGGGTTTAGAGCATTTTGGAGAGGCAATCTGGTTACTATTGCTCATCGCCTTCCATATTCTTCCGTCAGCTTCTATGCTTATGAACGCTACAAACAATTGCTGCATTCACTTCTTGGCGAAAATCTTAGGGGTAATGCAAGCACAGACATGTGTGTGCACTTTCTTGGTGGCGGGATGGCAGGATTAACCGCTGCCTCAGCCACATATCCGCTGGATCTTGTGAGGACACGTCTTGCAGCTCAGAGAAATGCACTATACTACAGAGGTATTGGGCATGCATTTCATACAATTTGCAGAGAAGAAGGTTTTTTGGGATTGTATAAAGGACTTGGAGCGACACTGTTGGGTGTTGGGCCCAGTATAGCAATAAGCTTCTCAGTTTATGAGGCTTTGAGGTCTTTTTGGCAGTCTGAAAGGCCCAATGATTCGACTGTCATGGTCAGTCTTGCCTGCGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACATTCCCTCTGGATCTTGTGAGGCGAAGGATGCAGTTGGAAGGGGCTGGTGGTCGAGCTCGCATCTATAATACCGGCTTAGTTGGGACTTTTAAGCACATAATCCGGACTGAAGGCCTACGGGGCTTGTATAGAGGGATTCTGCCAGAATATTACAAGGTTGTCCCCAGTGTAGGCATTGTCTTCATGACTTACGAGACACTGAAAATGCTTTTGTCGCGCATCCAAGCAAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

348

Amino Acids

37.68

Weight (kDa)

9.81

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37890 AT3G53940 AT3G53940
fragaria_vesca	FvH4_6g12820 FvH4_6g12820 FvH4_6g12820
malus_domestica	MD04G1137900.v1.1 MD12G1153400.v1.1
prunus_persica	Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1 Prupe.6G263800_v2.0.a1
pyrus_communis	pycom04g12620 pycom12g14620
rosa_chinensis	RchiOBHm_Chr3g0464831
rosa_laevigata	RLG00000024671
rosa_roxburghii	Rroxscaffold_6G00415410
rosa_rugosa	Rorug03G0074200
rosa_samantha	Rh3CG139500 Rh3DG138300
rosa_wichuraiana	Rw3G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccII	CGCG	1 cut(s)	1024
AccIII	TCCGGA	1 cut(s)	909
AciI	CCGC	4 cut(s)	489, 507, 527, 771
AclWI	GGATC	2 cut(s)	540, 825
AcsI	RAATTY	2 cut(s)	49, 89
AcuI	CTGAAG	1 cut(s)	936
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	235, 285, 977
AflIII	ACRYGT	2 cut(s)	465, 545
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	9 cut(s)	8, 44, 56, 160, 167, 387, 557, 690, 863
AluI	AGCT	9 cut(s)	8, 44, 56, 160, 167, 387, 557, 690, 863
Alw21I	GWGCWC	2 cut(s)	477, 865
Alw26I	GTCTC	1 cut(s)	995
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	2 cut(s)	540, 825
Ama87I	CYCGRG	1 cut(s)	9
Aor13HI	TCCGGA	1 cut(s)	909
AoxI	GGCC	4 cut(s)	276, 671, 734, 919
ApaI	GGGCCC	1 cut(s)	675
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	263, 418, 509, 554
ApoI	RAATTY	2 cut(s)	49, 89
AspLEI	GCGC	1 cut(s)	1026
AspS9I	GGNCC	3 cut(s)	671, 672, 735
AsuHPI	GGTGA	2 cut(s)	163, 214
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	2 cut(s)	477, 675
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	675, 865
BbsI	GAAGAC	1 cut(s)	979
Bbv12I	GWGCWC	2 cut(s)	477, 865
BbvCI	CCTCAGC	1 cut(s)	514
BbvI	GCAGC	4 cut(s)	275, 405, 496, 566
BccI	CCATC	3 cut(s)	68, 233, 487
BciT130I	CCWGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	995
BfaI	CTAG	1 cut(s)	1042
BfmI	CTRYAG	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	927
BisI	GCNGC	5 cut(s)	264, 419, 510, 555, 772
BlsI	GCNGC	5 cut(s)	265, 420, 511, 556, 773
Bme1390I	CCNGG	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	671, 672, 735
BmiI	GGNNCC	2 cut(s)	82, 673
BmrFI	CCNGG	1 cut(s)	85
BmrI	ACTGGG	2 cut(s)	669, 966
BmsI	GCATC	3 cut(s)	825, 876, 1035
BmuI	ACTGGG	2 cut(s)	669, 966
BpiI	GAAGAC	1 cut(s)	979
Bpu10I	CCTNAGC	3 cut(s)	57, 138, 514
BsaAI	YACGTR	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	909
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 285, 977
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	3 cut(s)	279, 675, 972
Bse3DI	GCAATG	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	85
BseGI	GGATG	5 cut(s)	79, 225, 498, 840, 1026
BseLI	CCNNNNNNNGG	3 cut(s)	235, 285, 977
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	5 cut(s)	71, 152, 528, 572, 708
BseNI	ACTGG	3 cut(s)	279, 675, 972
BseSI	GKGCMC	2 cut(s)	477, 675
BseXI	GCAGC	4 cut(s)	275, 405, 496, 566
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	1024
BshFI	GGCC	4 cut(s)	278, 673, 736, 921
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	477, 865
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	879, 910
BslFI	GGGAC	2 cut(s)	904, 953
BslI	CCNNNNNNNGG	3 cut(s)	235, 285, 977
BsmAI	GTCTC	1 cut(s)	995
BsmFI	GGGAC	2 cut(s)	904, 953
BsmI	GAATGC	2 cut(s)	252, 421
BsnI	GGCC	4 cut(s)	278, 673, 736, 921
BsoBI	CYCGRG	1 cut(s)	9
Bsp120I	GGGCCC	1 cut(s)	671
Bsp1286I	GDGCHC	3 cut(s)	477, 675, 865
Bsp13I	TCCGGA	1 cut(s)	909
Bsp143I	GATC	2 cut(s)	532, 817
BspACI	CCGC	4 cut(s)	489, 507, 527, 771
BspANI	GGCC	4 cut(s)	278, 673, 736, 921
BspCNI	CTCAG	5 cut(s)	70, 151, 527, 571, 707
BspEI	TCCGGA	1 cut(s)	909
BspFNI	CGCG	1 cut(s)	1024
BspHI	TCATGA	1 cut(s)	990
BspLI	GGNNCC	2 cut(s)	82, 673
BspPI	GGATC	2 cut(s)	540, 825
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	786
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	3 cut(s)	279, 675, 972
BssAI	RCCGGY	1 cut(s)	878
BssMI	GATC	2 cut(s)	532, 817
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	3 cut(s)	151, 660, 751
BstAPI	GCANNNNNTGC	2 cut(s)	212, 247
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	5 cut(s)	217, 457, 594, 769, 865
BstDEI	CTNAG	8 cut(s)	57, 138, 163, 443, 514, 558, 694, 883
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	5 cut(s)	79, 225, 498, 840, 1026
BstFNI	CGCG	1 cut(s)	1024
BstHHI	GCGC	1 cut(s)	1026
BstKTI	GATC	2 cut(s)	535, 820
BstMAI	GTCTC	1 cut(s)	995
BstMBI	GATC	2 cut(s)	532, 817
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 247, 515, 835, 927, 1021
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	2 cut(s)	469, 596
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	577
BstSLI	GKGCMC	2 cut(s)	477, 675
BstUI	CGCG	1 cut(s)	1024
BstV1I	GCAGC	4 cut(s)	275, 405, 496, 566
BstV2I	GAAGAC	1 cut(s)	979
BstX2I	RGATCY	2 cut(s)	532, 817
BstYI	RGATCY	2 cut(s)	532, 817
BsuRI	GGCC	4 cut(s)	278, 673, 736, 921
BtgZI	GCGATG	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	5 cut(s)	79, 225, 498, 840, 1026
BtsIMutI	CAGTG	3 cut(s)	656, 979, 1004
Cac8I	GCNNGC	5 cut(s)	217, 457, 594, 769, 865
CciI	TCATGA	1 cut(s)	990
CfoI	GCGC	1 cut(s)	1026
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	671, 672, 735
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	5 cut(s)	290, 466, 593, 754, 991
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	8 cut(s)	57, 138, 163, 443, 514, 558, 694, 883
DpnI	GATC	2 cut(s)	534, 819
DpnII	GATC	2 cut(s)	532, 817
DraI	TTTAAA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	863
Eco147I	AGGCCT	1 cut(s)	921
Eco24I	GRGCYC	2 cut(s)	675, 865
Eco53kI	GAGCTC	1 cut(s)	863
Eco57I	CTGAAG	1 cut(s)	936
Eco88I	CYCGRG	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	863
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	2 cut(s)	675, 865
FaeI	CATG	5 cut(s)	293, 469, 596, 757, 994
FaqI	GGGAC	2 cut(s)	904, 953
FatI	CATG	5 cut(s)	289, 465, 592, 753, 990
FauI	CCCGC	1 cut(s)	482
Fnu4HI	GCNGC	5 cut(s)	264, 419, 510, 555, 772
FokI	GGATG	5 cut(s)	86, 212, 505, 847, 1013
FriOI	GRGCYC	2 cut(s)	675, 865
Fsp4HI	GCNGC	5 cut(s)	264, 419, 510, 555, 772
FspBI	CTAG	1 cut(s)	1042
GlaI	GCGC	1 cut(s)	1025
GluI	GCNGC	5 cut(s)	264, 419, 510, 555, 772
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	4 cut(s)	278, 673, 736, 921
HapII	CCGG	2 cut(s)	879, 910
HhaI	GCGC	1 cut(s)	1026
Hin1II	CATG	5 cut(s)	293, 469, 596, 757, 994
Hin6I	GCGC	1 cut(s)	1024
HinP1I	GCGC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	3 cut(s)	127, 743, 943
HpaII	CCGG	2 cut(s)	879, 910
HphI	GGTGA	2 cut(s)	163, 214
Hpy166II	GTNNAC	4 cut(s)	28, 154, 310, 475
Hpy188I	TCNGA	3 cut(s)	256, 561, 730
Hpy188III	TCNNGA	3 cut(s)	815, 910, 991
Hpy8I	GTNNAC	4 cut(s)	28, 154, 310, 475
HpyAV	CCTTC	6 cut(s)	311, 377, 614, 825, 839, 911
HpyCH4III	ACNGT	3 cut(s)	151, 660, 751
HpyCH4IV	ACGT	2 cut(s)	301, 547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 247, 515, 835, 927, 1021
HpyF3I	CTNAG	8 cut(s)	57, 138, 163, 443, 514, 558, 694, 883
HpySE526I	ACGT	2 cut(s)	301, 547
Hsp92II	CATG	5 cut(s)	293, 469, 596, 757, 994
HspAI	GCGC	1 cut(s)	1024
Kpn2I	TCCGGA	1 cut(s)	909
Kzo9I	GATC	2 cut(s)	532, 817
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	4 cut(s)	275, 405, 496, 566
LweI	GCATC	3 cut(s)	825, 876, 1035
MaeI	CTAG	1 cut(s)	1042
MaeII	ACGT	2 cut(s)	301, 547
MaeIII	GTNAC	2 cut(s)	349, 1037
MalI	GATC	2 cut(s)	534, 819
MboI	GATC	2 cut(s)	532, 817
MboII	GAAGA	4 cut(s)	326, 369, 629, 979
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	2 cut(s)	532, 817
MhlI	GDGCHC	3 cut(s)	477, 675, 865
MluCI	AATT	4 cut(s)	49, 89, 413, 606
MmeI	TCCRAC	1 cut(s)	822
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	909
MseI	TTAA	3 cut(s)	47, 503, 897
MslI	CAYNNNNRTG	3 cut(s)	255, 464, 470
MspA1I	CMGCKG	2 cut(s)	509, 529
MspI	CCGG	2 cut(s)	879, 910
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	2 cut(s)	252, 421
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	6 cut(s)	212, 247, 515, 835, 927, 1021
NdeII	GATC	2 cut(s)	532, 817
NlaIII	CATG	5 cut(s)	293, 469, 596, 757, 994
NlaIV	GGNNCC	2 cut(s)	82, 673
NmuCI	GTSAC	1 cut(s)	1037
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	469, 596
PaeI	GCATGC	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	9
PagI	TCATGA	1 cut(s)	990
PceI	AGGCCT	1 cut(s)	921
PciI	ACATGT	1 cut(s)	465
PctI	GAATGC	2 cut(s)	252, 421
PfeI	GAWTC	3 cut(s)	127, 743, 943
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	5 cut(s)	265, 420, 511, 556, 773
Ppu21I	YACGTR	1 cut(s)	302
PscI	ACATGT	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	82, 673
PspOMI	GGGCCC	1 cut(s)	671
PspPI	GGNCC	3 cut(s)	671, 672, 735
PspXI	VCTCGAGB	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	532, 817
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	3 cut(s)	255, 464, 470
SacI	GAGCTC	1 cut(s)	865
SaqAI	TTAA	3 cut(s)	47, 503, 897
SatI	GCNGC	5 cut(s)	264, 419, 510, 555, 772
Sau3AI	GATC	2 cut(s)	532, 817
Sau96I	GGNCC	3 cut(s)	671, 672, 735
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	3 cut(s)	477, 675, 865
SfaNI	GCATC	3 cut(s)	825, 876, 1035
SfcI	CTRYAG	1 cut(s)	577
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	3 cut(s)	255, 464, 470
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	4 cut(s)	49, 89, 413, 606
SseBI	AGGCCT	1 cut(s)	921
SsiI	CCGC	4 cut(s)	489, 507, 527, 771
SspI	AATATT	1 cut(s)	956
SspMI	CTAG	1 cut(s)	1042
SstI	GAGCTC	1 cut(s)	865
StuI	AGGCCT	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	151, 660, 751
TaiI	ACGT	2 cut(s)	304, 550
TaqI	TCGA	3 cut(s)	10, 746, 859
TasI	AATT	4 cut(s)	49, 89, 413, 606
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	774
TfiI	GAWTC	3 cut(s)	127, 743, 943
Tru1I	TTAA	3 cut(s)	47, 503, 897
Tru9I	TTAA	3 cut(s)	47, 503, 897
TscAI	CASTG	3 cut(s)	663, 979, 1011
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	4 cut(s)	263, 418, 509, 554
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	4 cut(s)	140, 414, 590, 979
TspGWI	ACGGA	2 cut(s)	45, 370
TspRI	CASTG	3 cut(s)	663, 979, 1011
Van91I	CCANNNNNTGG	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	473
XagI	CCTNNNNNAGG	1 cut(s)	233
XapI	RAATTY	2 cut(s)	49, 89
XceI	RCATGY	2 cut(s)	469, 596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	164, 526
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	1042
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.