MD12G1153400.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
23346106 .. 23349820
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1153400.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGGAAGCTCGAGTTGGGGTGGTGATGGAAGGAAAGCAGAGAGCTTCGAATTCAGCTCAGGGAGGCGTGGTGGATGGGGGCGCCAGGAAATTCTTGCAGCAGCAGAGCCAGGCGAAGCAGTCCCTGAATCAGCAGTCCCAGATAGGGACGGTGAACCAGCTTTTAGCTGGCGGTATCGCCGGTGCTTTTAGCAAAACCTGCACTGCGCCTCTTGCTCGCCTCACCATCCTCTTTCAGGTGCAAGGAATGCACTCTGATATTGCAACATTGAGTAAGGCTAGCATATGGCATGAGGCTTCACGTATTATCCATGAAGAAGGGTTTAAAGCATTTTGGAGAGGCAATCTGGTTACCATTGCTCATCGCCTTCCATATTCTGCCGTCAGCTTCTATGCTTATGAACGCTACAAGACCTTGCTGCATTCACTTGTTGATGAAAATTTTAGGGGTAATGCAAGTACTGACATGTGTGTGCACTTTCTCGGTGGTGGGATGGCAGGGTTAACTGCTGCCTCAGCCACATATCCACTGGATCTTGTGAGGACACGTCTTGCAGCCCAGAGAAATGCACTATACTACAGAGGTATTGGACATGCATTTCATACAATTTGCATAGAAGAAGGTTTTTGGGGATTGTATAAAGGACTTGGAGCGACACTTTTGGGTGTGGGACCCAGTATAGCAATAAGCTTCTCAGTTTATGAGGCTTTGAGATCTTTTTGGCAGTCCCAAAGGCCCAATGATTCGACTGTTGTGGTCAGTCTTGCTTGCGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACATTCCCTTTGGATCTTGTAAGGCGAAGAATGCAGTTGGAGGGGGCTGGTGGTCGAGCCCGCGTCTATAATACGGGCTTACTTGGGACTTTAAGGCACATAACGCGGACTGAAGGCCTGCGGGGCTTGTATAGAGGGATAATGCCAGAGTATTACAAGGTCGTTCCAAGTGTAGGAATTGTCTTCATGACTTACGAGACATTGAAAATGCTTTTTGCCCGCATCCAATCAAGTGACTAG

Protein Analysis

348

Amino Acids

37.85

Weight (kDa)

9.74

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 48 - 141 3.2e-22 Mitochondrial carrier protein
Mito_carr PF00153 157 - 243 8.2e-23 Mitochondrial carrier protein
Mito_carr PF00153 249 - 341 1.1e-24 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 2 cut(s) 867, 910
AciI CCGC 6 cut(s) 171, 771, 865, 910, 925, 1024
AclWI GGATC 2 cut(s) 540, 825
AcsI RAATTY 3 cut(s) 49, 89, 439
AcuI CTGAAG 1 cut(s) 936
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 3 cut(s) 144, 235, 977
AflIII ACRYGT 2 cut(s) 465, 545
AgsI TTSAA 1 cut(s) 1009
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 2 cut(s) 83, 108
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AluBI AGCT 7 cut(s) 8, 44, 56, 160, 167, 387, 690
AluI AGCT 7 cut(s) 8, 44, 56, 160, 167, 387, 690
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 995
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 2 cut(s) 540, 825
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 2 cut(s) 734, 919
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 5 cut(s) 97, 100, 418, 509, 554
ApoI RAATTY 3 cut(s) 49, 89, 439
AspLEI GCGC 2 cut(s) 83, 208
AspS9I GGNCC 2 cut(s) 671, 735
AsuHPI GGTGA 3 cut(s) 34, 163, 214
AsuII TTCGAA 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 979
Bbv12I GWGCWC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 514
BbvI GCAGC 5 cut(s) 109, 112, 405, 496, 566
BccI CCATC 4 cut(s) 19, 68, 233, 487
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 85, 110
BcoDI GTCTC 1 cut(s) 995
BfaI CTAG 2 cut(s) 279, 1042
BfmI CTRYAG 1 cut(s) 577
BfoI RGCGCY 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 927
BglII AGATCT 1 cut(s) 713
BisI GCNGC 6 cut(s) 98, 101, 419, 510, 555, 772
BlsI GCNGC 6 cut(s) 99, 102, 420, 511, 556, 773
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 2 cut(s) 85, 110
Bme18I GGWCC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 671, 735
BmiI GGNNCC 3 cut(s) 82, 672, 673
BmrFI CCNGG 2 cut(s) 85, 110
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 1 cut(s) 1035
BmtI GCTAGC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 979
Bpu10I CCTNAGC 2 cut(s) 57, 514
Bpu14I TTCGAA 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 235, 977
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 534, 675
Bse3DI GCAATG 2 cut(s) 354, 786
BseBI CCWGG 2 cut(s) 85, 110
BseGI GGATG 4 cut(s) 79, 225, 498, 1026
BseLI CCNNNNNNNGG 3 cut(s) 144, 235, 977
BseMI GCAATG 2 cut(s) 354, 786
BseMII CTCAG 3 cut(s) 71, 528, 708
BseNI ACTGG 2 cut(s) 534, 675
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 5 cut(s) 109, 112, 405, 496, 566
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 867, 910
BshFI GGCC 2 cut(s) 736, 921
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 6 cut(s) 106, 121, 160, 684, 712, 904
BslI CCNNNNNNNGG 3 cut(s) 144, 235, 977
BsmAI GTCTC 1 cut(s) 995
BsmFI GGGAC 6 cut(s) 106, 121, 160, 684, 712, 904
BsmI GAATGC 3 cut(s) 252, 421, 840
BsnI GGCC 2 cut(s) 736, 921
BsoBI CYCGRG 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 477, 865
Bsp143I GATC 3 cut(s) 532, 713, 817
BspACI CCGC 6 cut(s) 171, 771, 865, 910, 925, 1024
BspANI GGCC 2 cut(s) 736, 921
BspCNI CTCAG 3 cut(s) 70, 527, 707
BspFNI CGCG 2 cut(s) 867, 910
BspHI TCATGA 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 82, 672, 673
BspMI ACCTGC 1 cut(s) 206
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 540, 825
BspT104I TTCGAA 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 354, 786
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 534, 675
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 3 cut(s) 532, 713, 817
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 85, 110
Bst4CI ACNGT 2 cut(s) 151, 751
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 2 cut(s) 198, 247
BstBAI YACGTR 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 7 cut(s) 169, 217, 280, 769, 865, 923, 1024
BstDEI CTNAG 3 cut(s) 57, 514, 694
BstEII GGTNACC 1 cut(s) 349
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 4 cut(s) 79, 225, 498, 1026
BstFNI CGCG 2 cut(s) 867, 910
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 2 cut(s) 83, 208
BstKTI GATC 3 cut(s) 535, 716, 820
BstMAI GTCTC 1 cut(s) 995
BstMBI GATC 3 cut(s) 532, 713, 817
BstMWI GCNNNNNNNGC 7 cut(s) 198, 212, 247, 515, 835, 907, 927
BstNI CCWGG 2 cut(s) 85, 110
BstNSI RCATGY 2 cut(s) 469, 596
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 83, 108
BstSFI CTRYAG 1 cut(s) 577
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 2 cut(s) 867, 910
BstV1I GCAGC 5 cut(s) 109, 112, 405, 496, 566
BstV2I GAAGAC 1 cut(s) 979
BstX2I RGATCY 3 cut(s) 532, 713, 817
BstYI RGATCY 3 cut(s) 532, 713, 817
BsuRI GGCC 2 cut(s) 736, 921
BtgZI GCGATG 1 cut(s) 347
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 4 cut(s) 79, 225, 498, 1026
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 527
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 7 cut(s) 169, 217, 280, 769, 865, 923, 1024
CaiI CAGNNNCTG 1 cut(s) 124
CciI TCATGA 1 cut(s) 990
CfoI GCGC 2 cut(s) 83, 208
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 671, 735
CseI GACGC 1 cut(s) 856
Csp6I GTAC 1 cut(s) 459
CviAII CATG 5 cut(s) 290, 311, 466, 593, 991
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 3 cut(s) 57, 514, 694
DinI GGCGCC 1 cut(s) 82
DpnI GATC 3 cut(s) 534, 715, 819
DpnII GATC 3 cut(s) 532, 713, 817
DraI TTTAAA 1 cut(s) 325
Eco147I AGGCCT 1 cut(s) 921
Eco24I GRGCYC 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 936
Eco88I CYCGRG 1 cut(s) 9
Eco91I GGTNACC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 671
EcoO65I GGTNACC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 83, 108
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 865
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 5 cut(s) 293, 314, 469, 596, 994
FaqI GGGAC 6 cut(s) 106, 121, 160, 684, 712, 904
FatI CATG 5 cut(s) 289, 310, 465, 592, 990
FauI CCCGC 3 cut(s) 872, 918, 1031
FauNDI CATATG 1 cut(s) 284
Fnu4HI GCNGC 6 cut(s) 98, 101, 419, 510, 555, 772
FokI GGATG 4 cut(s) 86, 212, 505, 1013
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 6 cut(s) 98, 101, 419, 510, 555, 772
FspBI CTAG 2 cut(s) 279, 1042
GlaI GCGC 2 cut(s) 82, 207
GluI GCNGC 6 cut(s) 98, 101, 419, 510, 555, 772
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 2 cut(s) 736, 921
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 856
HhaI GCGC 2 cut(s) 83, 208
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 5 cut(s) 293, 314, 469, 596, 994
Hin6I GCGC 2 cut(s) 81, 206
HinP1I GCGC 2 cut(s) 81, 206
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 2 cut(s) 127, 743
HpaI GTTAAC 1 cut(s) 504
HpaII CCGG 1 cut(s) 180
HphI GGTGA 3 cut(s) 34, 163, 214
Hpy166II GTNNAC 3 cut(s) 154, 475, 504
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 991
Hpy8I GTNNAC 3 cut(s) 154, 475, 504
HpyAV CCTTC 5 cut(s) 23, 311, 377, 614, 911
HpyCH4III ACNGT 2 cut(s) 151, 751
HpyCH4IV ACGT 2 cut(s) 301, 547
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 212, 247, 515, 835, 907, 927
HpyF3I CTNAG 3 cut(s) 57, 514, 694
HpySE526I ACGT 2 cut(s) 301, 547
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 5 cut(s) 293, 314, 469, 596, 994
HspAI GCGC 2 cut(s) 81, 206
KasI GGCGCC 1 cut(s) 80
KflI GGGWCCC 1 cut(s) 671
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 532, 713, 817
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 5 cut(s) 109, 112, 405, 496, 566
LweI GCATC 1 cut(s) 1035
MaeI CTAG 2 cut(s) 279, 1042
MaeII ACGT 2 cut(s) 301, 547
MaeIII GTNAC 2 cut(s) 349, 1037
MalI GATC 3 cut(s) 534, 715, 819
MboI GATC 3 cut(s) 532, 713, 817
MboII GAAGA 4 cut(s) 326, 629, 843, 979
MflI RGATCY 3 cut(s) 532, 713, 817
MhlI GDGCHC 2 cut(s) 477, 865
MluCI AATT 5 cut(s) 49, 89, 439, 606, 981
Mly113I GGCGCC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 822
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 3 cut(s) 324, 503, 896
MslI CAYNNNNRTG 1 cut(s) 470
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 85, 110
Mva1269I GAATGC 3 cut(s) 252, 421, 840
MvaI CCWGG 2 cut(s) 85, 110
MvnI CGCG 2 cut(s) 867, 910
MwoI GCNNNNNNNGC 7 cut(s) 198, 212, 247, 515, 835, 907, 927
NarI GGCGCC 1 cut(s) 81
NdeI CATATG 1 cut(s) 284
NdeII GATC 3 cut(s) 532, 713, 817
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 5 cut(s) 293, 314, 469, 596, 994
NlaIV GGNNCC 3 cut(s) 82, 672, 673
NmuCI GTSAC 1 cut(s) 1037
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 2 cut(s) 469, 596
NspV TTCGAA 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 9
PagI TCATGA 1 cut(s) 990
PceI AGGCCT 1 cut(s) 921
PciI ACATGT 1 cut(s) 465
PctI GAATGC 3 cut(s) 252, 421, 840
PfeI GAWTC 2 cut(s) 127, 743
PkrI GCNGC 6 cut(s) 99, 102, 420, 511, 556, 773
PluTI GGCGCC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 302
PpuMI RGGWCCY 1 cut(s) 671
PscI ACATGT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 83, 108
PspEI GGTNACC 1 cut(s) 349
PspGI CCWGG 2 cut(s) 83, 108
PspN4I GGNNCC 3 cut(s) 82, 672, 673
PspPI GGNCC 2 cut(s) 671, 735
PspPPI RGGWCCY 1 cut(s) 671
PspXI VCTCGAGB 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 3 cut(s) 532, 713, 817
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 3 cut(s) 324, 503, 896
SatI GCNGC 6 cut(s) 98, 101, 419, 510, 555, 772
Sau3AI GATC 3 cut(s) 532, 713, 817
Sau96I GGNCC 2 cut(s) 671, 735
ScaI AGTACT 1 cut(s) 460
ScrFI CCNGG 2 cut(s) 85, 110
SduI GDGCHC 2 cut(s) 477, 865
SfaNI GCATC 1 cut(s) 1035
SfcI CTRYAG 1 cut(s) 577
SfoI GGCGCC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 47
SgrAI CRCCGGYG 1 cut(s) 179
SinI GGWCC 1 cut(s) 671
SlaI CTCGAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 5 cut(s) 49, 89, 439, 606, 981
SseBI AGGCCT 1 cut(s) 921
SsiI CCGC 6 cut(s) 171, 771, 865, 910, 925, 1024
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 279, 1042
StuI AGGCCT 1 cut(s) 921
StyD4I CCNGG 2 cut(s) 83, 108
TaaI ACNGT 2 cut(s) 151, 751
TaiI ACGT 2 cut(s) 304, 550
TaqI TCGA 4 cut(s) 10, 47, 746, 859
TasI AATT 5 cut(s) 49, 89, 439, 606, 981
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 774
TfiI GAWTC 2 cut(s) 127, 743
Tru1I TTAA 3 cut(s) 324, 503, 896
Tru9I TTAA 3 cut(s) 324, 503, 896
TscAI CASTG 2 cut(s) 208, 534
TseFI GTSAC 1 cut(s) 1037
TseI GCWGC 5 cut(s) 97, 100, 418, 509, 554
Tsp45I GTSAC 1 cut(s) 1037
TspDTI ATGAA 5 cut(s) 327, 414, 450, 590, 979
TspRI CASTG 2 cut(s) 208, 534
VneI GTGCAC 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 3 cut(s) 49, 89, 439
XceI RCATGY 2 cut(s) 469, 596
XcmI CCANNNNNNNNNTGG 2 cut(s) 164, 526
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 2 cut(s) 279, 1042
ZrmI AGTACT 1 cut(s) 460
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.