Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012781

Physical Location & Seq

Genomic Coordinates Forward (+)

15876717 .. 15880103

Gene Structure 3387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGACACTTTATATTCGTCGTGAATCTTCCAAGCTATGGAAGAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGAAATATCTTCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTCATTATATTCATCGCCCGGGACCGACACTTCAGGATCTTGGCTTCTTTCTTCTTCCGGAGCTTGGTCAAGAGAGAAGCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTTTCCTGTGGACTTTCCATCCATTCATTCTGAAAACCAAAAAGATATACACCGTTTTGATATGGTGCAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATAACTTTCTATTCAACTCAGCTTCCTGGCCCTAACTATCACTGCCGTGAGGGCTCTAAAGTTTCTAGGTTGCCATGGCCCAAAAGCGCTCTTGAGGTTCTCGAGATTAACCCTCATGGGGTGATGTATGGATGCGGAGACCTGATTTTCTCATCGCACATGATATTCACTCTAGTCTTTGTCCGTACTTACCAGAAATATGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCACTGCAATTGTGCAGAGCCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTAGTTGTTGCATGGTATACTGTGAATTTGGTGGTGTTCTGTCTAGACAAGAAATTACCAGAATTACCAGATCGGACTGCTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACAAAAGAAGAGAACCACAAGCTGTTGAATGGAAACGGTGTTGACCCTGCTGATTGGAGACCGAGGGCTCAGGTGAACGGGAAGATTGACAGCAACGGAGTTCACACGGATAACACAATGAATGGCGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

305

Amino Acids

35.0

Weight (kDa)

9.37

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2_C	PF14360	171 - 238	7.2e-23	PAP2 superfamily C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37940 AT2G37940 AT3G54020
fragaria_vesca	FvH4_6g12480 FvH4_6g12480
malus_domestica	MD04G1141900.v1.1 MD12G1156500.v1.1
prunus_persica	Prupe.6G267300_v2.0.a1
pyrus_communis	pycom04g12890 pycom12g14860
rosa_chinensis	RchiOBHm_Chr3g0464301
rosa_laevigata	RLG00000024710
rosa_roxburghii	Rroxscaffold_6G00415830
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133300 Rh3CG135600 Rh3DG134800
rosa_wichuraiana	Rw3G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	692
AccII	CGCG	1 cut(s)	914
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	125, 568
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	36, 215, 499
AgsI	TTSAA	2 cut(s)	396, 814
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	406
AleI	CACNNNNGTG	2 cut(s)	257, 426
AluBI	AGCT	7 cut(s)	34, 140, 214, 231, 403, 604, 808
AluI	AGCT	7 cut(s)	34, 140, 214, 231, 403, 604, 808
Alw26I	GTCTC	2 cut(s)	513, 838
AlwI	GGATC	1 cut(s)	195
Ama87I	CYCGRG	2 cut(s)	169, 482
Aor13HI	TCCGGA	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	469
AoxI	GGCC	2 cut(s)	409, 458
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	700
AspLEI	GCGC	2 cut(s)	470, 914
AspS9I	GGNCC	3 cut(s)	173, 410, 459
AsuC2I	CCSGG	2 cut(s)	170, 171
AsuHPI	GGTGA	2 cut(s)	514, 871
AvaI	CYCGRG	2 cut(s)	169, 482
AvaII	GGWCC	1 cut(s)	173
BanII	GRGCYC	2 cut(s)	437, 856
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	2 cut(s)	170, 171
BcoDI	GTCTC	2 cut(s)	513, 838
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	5 cut(s)	255, 347, 447, 554, 719
BfoI	RGCGCY	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	3 cut(s)	170, 171, 408
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	2 cut(s)	169, 482
BmgT120I	GGNCC	3 cut(s)	173, 410, 459
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	3 cut(s)	170, 171, 408
BmrI	ACTGGG	1 cut(s)	761
BmsI	GCATC	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	761
BpiI	GAAGAC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	2 cut(s)	170, 171
BsaI	GGTCTC	2 cut(s)	513, 838
BsaJI	CCNNGG	3 cut(s)	169, 455, 848
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 215, 499
Bse1I	ACTGG	3 cut(s)	95, 367, 767
Bse3DI	GCAATG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	169, 455, 848
BseGI	GGATG	2 cut(s)	289, 518
BseLI	CCNNNNNNNGG	3 cut(s)	36, 215, 499
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	45, 75, 413, 869
BseNI	ACTGG	3 cut(s)	95, 367, 767
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	2 cut(s)	358, 650
Bsh1236I	CGCG	1 cut(s)	914
BshFI	GGCC	2 cut(s)	411, 460
BsiHKCI	CYCGRG	2 cut(s)	169, 482
BsiSI	CCGG	2 cut(s)	170, 209
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	36, 215, 499
BsmAI	GTCTC	2 cut(s)	513, 838
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	411, 460
Bso31I	GGTCTC	2 cut(s)	513, 838
BsoBI	CYCGRG	2 cut(s)	169, 482
Bsp1286I	GDGCHC	2 cut(s)	437, 856
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	187, 642, 745
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	2 cut(s)	411, 460
BspCNI	CTCAG	4 cut(s)	46, 76, 412, 868
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	914
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	195
BspTNI	GGTCTC	2 cut(s)	513, 838
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	95, 367, 767
BssECI	CCNNGG	3 cut(s)	169, 455, 848
BssMI	GATC	3 cut(s)	187, 642, 745
BssNAI	GTATAC	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	455
Bst1107I	GTATAC	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	5 cut(s)	247, 325, 668, 697, 824
Bst6I	CTCTTC	2 cut(s)	35, 789
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	5 cut(s)	54, 84, 355, 399, 855
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	289, 518
BstFNI	CGCG	1 cut(s)	914
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	470, 914
BstKTI	GATC	3 cut(s)	190, 645, 748
BstMAI	GTCTC	2 cut(s)	513, 838
BstMBI	GATC	3 cut(s)	187, 642, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	3 cut(s)	168, 169, 406
BstUI	CGCG	1 cut(s)	914
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	411, 460
BtgI	CCRYGG	1 cut(s)	455
BtgZI	GCGATG	2 cut(s)	149, 519
BtsCI	GGATG	2 cut(s)	289, 518
BtsI	GCAGTG	2 cut(s)	421, 618
BtsIMutI	CAGTG	3 cut(s)	421, 618, 673
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	2 cut(s)	470, 914
Cfr13I	GGNCC	3 cut(s)	173, 410, 459
Cfr9I	CCCGGG	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	124, 567
CviAII	CATG	5 cut(s)	131, 456, 497, 541, 687
CviQI	GTAC	2 cut(s)	124, 567
DdeI	CTNAG	5 cut(s)	54, 84, 355, 399, 855
DpnI	GATC	3 cut(s)	189, 644, 747
DpnII	GATC	3 cut(s)	187, 642, 745
Eam1104I	CTCTTC	2 cut(s)	35, 789
EarI	CTCTTC	2 cut(s)	35, 789
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	2 cut(s)	437, 856
Eco31I	GGTCTC	2 cut(s)	513, 838
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	2 cut(s)	169, 482
EcoRII	CCWGG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	2 cut(s)	437, 856
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	5 cut(s)	134, 459, 500, 544, 690
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	5 cut(s)	130, 455, 496, 540, 686
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	2 cut(s)	276, 525
FriOI	GRGCYC	2 cut(s)	437, 856
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	5 cut(s)	255, 347, 447, 554, 719
GlaI	GCGC	2 cut(s)	469, 913
GluI	GCNGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	411, 460
HapII	CCGG	2 cut(s)	170, 209
HhaI	GCGC	2 cut(s)	470, 914
Hin1II	CATG	5 cut(s)	134, 459, 500, 544, 690
Hin6I	GCGC	2 cut(s)	468, 912
HinP1I	GCGC	2 cut(s)	468, 912
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	170, 209
HphI	GGTGA	2 cut(s)	514, 871
Hpy166II	GTNNAC	7 cut(s)	252, 282, 659, 693, 829, 862, 889
Hpy188I	TCNGA	3 cut(s)	55, 303, 750
Hpy188III	TCNNGA	9 cut(s)	20, 185, 209, 221, 473, 482, 484, 640, 719
Hpy8I	GTNNAC	7 cut(s)	252, 282, 659, 693, 829, 862, 889
Hpy99I	CGWCG	2 cut(s)	21, 67
HpyCH4III	ACNGT	5 cut(s)	247, 325, 668, 697, 824
HpyCH4V	TGCA	4 cut(s)	339, 623, 631, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	5 cut(s)	54, 84, 355, 399, 855
Hsp92II	CATG	5 cut(s)	134, 459, 500, 544, 690
HspAI	GCGC	2 cut(s)	468, 912
Kpn2I	TCCGGA	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	187, 642, 745
LmnI	GCTCC	2 cut(s)	211, 768
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	5 cut(s)	255, 347, 447, 554, 719
MalI	GATC	3 cut(s)	189, 644, 747
MboI	GATC	3 cut(s)	187, 642, 745
MboII	GAAGA	8 cut(s)	18, 52, 68, 92, 194, 197, 806, 880
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	437, 856
MluCI	AATT	4 cut(s)	624, 700, 728, 737
MnlI	CCTC	6 cut(s)	424, 469, 504, 647, 661, 843
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	3 cut(s)	257, 426, 666
MspI	CCGG	2 cut(s)	170, 209
MspR9I	CCNGG	3 cut(s)	170, 171, 408
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	914
MwoI	GCNNNNNNNGC	1 cut(s)	432
NciI	CCSGG	2 cut(s)	170, 171
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	3 cut(s)	187, 642, 745
NlaIII	CATG	5 cut(s)	134, 459, 500, 544, 690
NlaIV	GGNNCC	1 cut(s)	174
OliI	CACNNNNGTG	2 cut(s)	257, 426
PaeR7I	CTCGAG	1 cut(s)	482
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	3 cut(s)	173, 410, 459
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	2 cut(s)	125, 568
RsaNI	GTAC	2 cut(s)	124, 567
RseI	CAYNNNNRTG	3 cut(s)	257, 426, 666
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	187, 642, 745
Sau96I	GGNCC	3 cut(s)	173, 410, 459
ScrFI	CCNGG	3 cut(s)	170, 171, 408
SduI	GDGCHC	2 cut(s)	437, 856
SfaNI	GCATC	1 cut(s)	503
Sfr274I	CTCGAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	482
SmaI	CCCGGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	3 cut(s)	257, 426, 666
SmlI	CTYRAG	2 cut(s)	473, 482
SmoI	CTYRAG	2 cut(s)	473, 482
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	4 cut(s)	624, 700, 728, 737
SsiI	CCGC	1 cut(s)	516
SspMI	CTAG	5 cut(s)	255, 347, 447, 554, 719
StyD4I	CCNGG	3 cut(s)	168, 169, 406
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	5 cut(s)	247, 325, 668, 697, 824
TaqI	TCGA	3 cut(s)	62, 483, 672
TaqII	GACCGA	2 cut(s)	190, 862
TasI	AATT	4 cut(s)	624, 700, 728, 737
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	3 cut(s)	428, 625, 673
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	119, 143, 152, 286, 586
TspGWI	ACGGA	5 cut(s)	80, 365, 554, 897, 908
TspMI	CCCGGG	1 cut(s)	169
TspRI	CASTG	3 cut(s)	428, 625, 673
Van91I	CCANNNNNTGG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	700
XbaI	TCTAGA	1 cut(s)	718
XhoI	CTCGAG	1 cut(s)	482
XmaI	CCCGGG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	5 cut(s)	255, 347, 447, 554, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.