Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012781

Physical Location & Seq

Genomic Coordinates Forward (+)

23082576 .. 23087362

Gene Structure 4787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1141900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGACGCTTTACATTGGCCGCGAGTCGTCAAAGCTCTGGAAGAGAATCTGCGCCGAGGTAGTCACCGAGATCAATCTCCTCGCCGCGAATTGGAAGTATCTTCTCGCCGGTCTAGTTTTTCAGTACATACATGGTCTAGCTGCTCGAGGAGTTCATTATATACATCGGGCAGGGCCAACACTCCAGGATGCTGGTTTCTTTCTTCTTCCGGAACTTGGGCAGGACAGAGCCTATATCAGTGAGACCCTTTTCACCTTCATCTTCTTATCTTTTGTATTGTGGAGCTTCCATCCTTTCATTTTCAAGGGCAAAAAGTTTTACACAGTTCTCCTTTGGTGTAGAGTTTTAGCGTTCTTATCGGCTTCTCAATTTCTCCGGATTATCACTTTCTATTCCACCCAGCTTCCCGGTCCAAATTACCATTGTCGAGAGGGTTCTAAACTTGCCAGGCTGCCTCCTCCGGAAAGTGTATTAGAAGTCTTCTTGATCATTCCGCATGGTGTACTTTATGGTTGTGGTGATTTGATTTTCTCATCACACATGATATTTAGTCTAGTCTTTGTGCGCACTTATCAGAAATACGGTACACAAAGGTTTATAAAGCAGTTAGCCTGGTTACTCGTTGTGATCCAGAGTTTATTGATTGTGGCATCCCGCAAACATTACACAGTTGATGTTGTTGTTGCATGGTATACTGTTAATTTGGTCGTATTCTTTATCGACAAGAAATTGGCAGAATTACCTGACCGGACCAGCGGAGCTGCATCTCTCTTGTTACCGCTAAGCACAAAGGACAAGGATGGAAAGACCAAAGAAGAGAACCACAAGCTATTGAATGGAATCGTTGGAGACCCTGCTGATCGGAGGCAAAGAACTCAAGTGAACGGCAAGACTCTTGATGATGTAAACACAGTACACACCGATGCTACTATGAACGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

315

Amino Acids

35.67

Weight (kDa)

9.39

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2_C	PF14360	171 - 239	4.9e-23	PAP2 superfamily C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37940 AT2G37940 AT3G54020
fragaria_vesca	FvH4_6g12480 FvH4_6g12480
malus_domestica	MD04G1141900.v1.1 MD12G1156500.v1.1
prunus_persica	Prupe.6G267300_v2.0.a1
pyrus_communis	pycom04g12890 pycom12g14860
rosa_chinensis	RchiOBHm_Chr3g0464301
rosa_laevigata	RLG00000024710
rosa_roxburghii	Rroxscaffold_6G00415830
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133300 Rh3CG135600 Rh3DG134800
rosa_wichuraiana	Rw3G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc16I	TGCGCA	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	692
AccII	CGCG	2 cut(s)	21, 86
AccIII	TCCGGA	3 cut(s)	208, 375, 460
AciI	CCGC	6 cut(s)	19, 84, 494, 655, 756, 779
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	4 cut(s)	125, 504, 586, 915
AfiI	CCNNNNNNNGG	2 cut(s)	90, 215
AgsI	TTSAA	2 cut(s)	304, 835
AjnI	CCWGG	3 cut(s)	183, 446, 611
AluBI	AGCT	6 cut(s)	34, 140, 285, 403, 761, 829
AluI	AGCT	6 cut(s)	34, 140, 285, 403, 761, 829
Alw26I	GTCTC	2 cut(s)	236, 843
AlwI	GGATC	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	3 cut(s)	208, 375, 460
AoxI	GGCC	2 cut(s)	16, 173
ApeKI	GCWGC	3 cut(s)	140, 451, 761
AspLEI	GCGC	2 cut(s)	53, 567
AspS9I	GGNCC	3 cut(s)	173, 410, 750
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	55, 244, 530
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	410, 750
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	127, 438, 748
BccI	CCATC	2 cut(s)	297, 794
BceAI	ACGGC	1 cut(s)	901
BciT130I	CCWGG	3 cut(s)	185, 448, 613
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	236, 843
BfaI	CTAG	3 cut(s)	113, 137, 554
BisI	GCNGC	5 cut(s)	19, 84, 141, 452, 762
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	5 cut(s)	20, 85, 142, 453, 763
Bme1390I	CCNGG	4 cut(s)	185, 408, 448, 613
Bme18I	GGWCC	2 cut(s)	410, 750
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	173, 410, 750
BmrFI	CCNGG	4 cut(s)	185, 408, 448, 613
BmsI	GCATC	4 cut(s)	178, 659, 773, 913
BpiI	GAAGAC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	408
BsaI	GGTCTC	2 cut(s)	236, 843
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	4 cut(s)	208, 375, 460, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 215
Bse118I	RCCGGY	1 cut(s)	107
BseAI	TCCGGA	3 cut(s)	208, 375, 460
BseBI	CCWGG	3 cut(s)	185, 448, 613
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	4 cut(s)	193, 289, 650, 805
BseLI	CCNNNNNNNGG	2 cut(s)	90, 215
BseRI	GAGGAG	3 cut(s)	68, 162, 447
BseXI	GCAGC	3 cut(s)	127, 438, 748
BseYI	CCCAGC	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	21, 86
BshFI	GGCC	2 cut(s)	18, 175
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	6 cut(s)	108, 209, 376, 408, 461, 748
BslI	CCNNNNNNNGG	2 cut(s)	90, 215
BsmAI	GTCTC	2 cut(s)	236, 843
BsnI	GGCC	2 cut(s)	18, 175
Bso31I	GGTCTC	2 cut(s)	236, 843
BsoBI	CYCGRG	1 cut(s)	144
Bsp13I	TCCGGA	3 cut(s)	208, 375, 460
Bsp143I	GATC	4 cut(s)	69, 486, 627, 859
Bsp1720I	GCTNAGC	1 cut(s)	782
BspACI	CCGC	6 cut(s)	19, 84, 494, 655, 756, 779
BspANI	GGCC	2 cut(s)	18, 175
BspEI	TCCGGA	3 cut(s)	208, 375, 460
BspFNI	CGCG	2 cut(s)	21, 86
BspPI	GGATC	1 cut(s)	622
BspTNI	GGTCTC	2 cut(s)	236, 843
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	4 cut(s)	69, 486, 627, 859
BssNAI	GTATAC	1 cut(s)	693
Bst1107I	GTATAC	1 cut(s)	693
Bst2UI	CCWGG	3 cut(s)	185, 448, 613
Bst4CI	ACNGT	6 cut(s)	325, 584, 670, 697, 913, 938
Bst6I	CTCTTC	2 cut(s)	35, 810
BstDEI	CTNAG	1 cut(s)	782
BstF5I	GGATG	4 cut(s)	193, 289, 650, 805
BstFNI	CGCG	2 cut(s)	21, 86
BstHHI	GCGC	2 cut(s)	53, 567
BstKTI	GATC	4 cut(s)	72, 489, 630, 862
BstMAI	GTCTC	2 cut(s)	236, 843
BstMBI	GATC	4 cut(s)	69, 486, 627, 859
BstNI	CCWGG	3 cut(s)	185, 448, 613
BstSCI	CCNGG	4 cut(s)	183, 406, 446, 611
BstUI	CGCG	2 cut(s)	21, 86
BstV1I	GCAGC	3 cut(s)	127, 438, 748
BstV2I	GAAGAC	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	18, 175
BtsCI	GGATG	4 cut(s)	193, 289, 650, 805
BtsIMutI	CAGTG	1 cut(s)	244
CfoI	GCGC	2 cut(s)	53, 567
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	173, 410, 750
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	124, 503, 585, 914
CviAII	CATG	4 cut(s)	131, 497, 541, 687
CviQI	GTAC	4 cut(s)	124, 503, 585, 914
DdeI	CTNAG	1 cut(s)	782
DpnI	GATC	4 cut(s)	71, 488, 629, 861
DpnII	GATC	4 cut(s)	69, 486, 627, 859
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	35, 810
EarI	CTCTTC	2 cut(s)	35, 810
Eco31I	GGTCTC	2 cut(s)	236, 843
Eco47I	GGWCC	2 cut(s)	410, 750
Eco88I	CYCGRG	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	183, 446, 611
FaeI	CATG	4 cut(s)	134, 500, 544, 690
FatI	CATG	4 cut(s)	130, 496, 540, 686
FauI	CCCGC	1 cut(s)	662
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	5 cut(s)	19, 84, 141, 452, 762
FokI	GGATG	4 cut(s)	200, 276, 637, 812
Fsp4HI	GCNGC	5 cut(s)	19, 84, 141, 452, 762
FspAI	RTGCGCAY	1 cut(s)	566
FspBI	CTAG	3 cut(s)	113, 137, 554
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	2 cut(s)	52, 566
GluI	GCNGC	5 cut(s)	19, 84, 141, 452, 762
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	18, 175
HapII	CCGG	6 cut(s)	108, 209, 376, 408, 461, 748
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	53, 567
Hin1II	CATG	4 cut(s)	134, 500, 544, 690
Hin6I	GCGC	2 cut(s)	51, 565
HinP1I	GCGC	2 cut(s)	51, 565
HinfI	GANTC	4 cut(s)	23, 45, 840, 892
HpaII	CCGG	6 cut(s)	108, 209, 376, 408, 461, 748
HphI	GGTGA	3 cut(s)	55, 244, 530
Hpy166II	GTNNAC	6 cut(s)	503, 587, 693, 883, 907, 916
Hpy188I	TCNGA	2 cut(s)	576, 864
Hpy188III	TCNNGA	8 cut(s)	37, 209, 376, 428, 461, 484, 631, 896
Hpy8I	GTNNAC	6 cut(s)	503, 587, 693, 883, 907, 916
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	6 cut(s)	325, 584, 670, 697, 913, 938
HpyCH4V	TGCA	3 cut(s)	686, 764, 941
HpyF3I	CTNAG	1 cut(s)	782
Hsp92II	CATG	4 cut(s)	134, 500, 544, 690
HspAI	GCGC	2 cut(s)	51, 565
Kpn2I	TCCGGA	3 cut(s)	208, 375, 460
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	69, 486, 627, 859
LmnI	GCTCC	2 cut(s)	282, 758
Lsp1109I	GCAGC	3 cut(s)	127, 438, 748
LweI	GCATC	4 cut(s)	178, 659, 773, 913
MaeI	CTAG	3 cut(s)	113, 137, 554
MaeIII	GTNAC	3 cut(s)	61, 615, 774
MalI	GATC	4 cut(s)	71, 488, 629, 861
MboI	GATC	4 cut(s)	69, 486, 627, 859
MboII	GAAGA	7 cut(s)	52, 92, 194, 197, 253, 472, 827
MluCI	AATT	6 cut(s)	88, 368, 415, 700, 728, 737
MlyI	GAGTC	2 cut(s)	32, 886
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	7 cut(s)	49, 89, 140, 424, 465, 468, 858
MroI	TCCGGA	3 cut(s)	208, 375, 460
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	1 cut(s)	921
MspA1I	CMGCKG	1 cut(s)	756
MspI	CCGG	6 cut(s)	108, 209, 376, 408, 461, 748
MspR9I	CCNGG	4 cut(s)	185, 408, 448, 613
MvaI	CCWGG	3 cut(s)	185, 448, 613
MvnI	CGCG	2 cut(s)	21, 86
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	69, 486, 627, 859
NlaIII	CATG	4 cut(s)	134, 500, 544, 690
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	45, 840
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	5 cut(s)	20, 85, 142, 453, 763
PleI	GAGTC	2 cut(s)	31, 886
PpsI	GAGTC	2 cut(s)	31, 886
PsiI	TTATAA	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	183, 446, 611
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	3 cut(s)	183, 446, 611
PspPI	GGNCC	3 cut(s)	173, 410, 750
PspXI	VCTCGAGB	1 cut(s)	144
RsaI	GTAC	4 cut(s)	125, 504, 586, 915
RsaNI	GTAC	4 cut(s)	124, 503, 585, 914
RseI	CAYNNNNRTG	1 cut(s)	921
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	5 cut(s)	19, 84, 141, 452, 762
Sau3AI	GATC	4 cut(s)	69, 486, 627, 859
Sau96I	GGNCC	3 cut(s)	173, 410, 750
SchI	GAGTC	2 cut(s)	32, 886
ScrFI	CCNGG	4 cut(s)	185, 408, 448, 613
SfaNI	GCATC	4 cut(s)	178, 659, 773, 913
Sfr274I	CTCGAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	410, 750
SlaI	CTCGAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	2 cut(s)	144, 876
SmoI	CTYRAG	2 cut(s)	144, 876
Sse9I	AATT	6 cut(s)	88, 368, 415, 700, 728, 737
SsiI	CCGC	6 cut(s)	19, 84, 494, 655, 756, 779
SspMI	CTAG	3 cut(s)	113, 137, 554
StyD4I	CCNGG	4 cut(s)	183, 406, 446, 611
TaaI	ACNGT	6 cut(s)	325, 584, 670, 697, 913, 938
TaqI	TCGA	3 cut(s)	145, 427, 720
TasI	AATT	6 cut(s)	88, 368, 415, 700, 728, 737
TatI	WGTACW	3 cut(s)	123, 502, 913
TauI	GCSGC	2 cut(s)	21, 86
TfiI	GAWTC	2 cut(s)	45, 840
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	140, 451, 761
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	143, 247, 286
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	410, 750
XhoI	CTCGAG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	3 cut(s)	113, 137, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.