pycom04g12890

phosphatidylinositol ceramide inositolphosphotransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
15907270 .. 15908038
769 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12890.3

Sequence Viewer

Length: 369 bp
ATGGTACACAAAGCCTGGTTTATAAAGCAGTTAGCTTGGTTACTCGTTGTGATCCAGAGCTTCTTGATTGTGGCATCCCGCAAACATTACACTGTTGATGTTGTTGTTGCCTGGTATACTGTTAATTTGGTCGTATTCTTTATTGACAAGAAATTGGCAGAATTACCTGACCGGACCAGCGGAGCTGCATCTCTCTTGTTACCGCTAAGCACGAAGGACAAGGATGGTAAGACCAAAGAAGAGAACCACAAGCTATTGAATGGAATTGTCGGAGACCCTGCTGATCGGAGGCAAAGAACTCAAGTTAACGGCAAGACTCTTGATGATGTAAACACAGTACATGCCGATGCTCCTATGAACGGTGCATAG

Protein Analysis

123

Amino Acids

13.62

Weight (kDa)

9.26

Isoelectric Point (pI)

19.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012781)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccI GTMKAC 1 cut(s) 116
AciI CCGC 3 cut(s) 79, 180, 203
AclWI GGATC 1 cut(s) 46
AfaI GTAC 2 cut(s) 6, 339
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 2 cut(s) 14, 110
AluBI AGCT 4 cut(s) 35, 60, 185, 253
AluI AGCT 4 cut(s) 35, 60, 185, 253
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 174
AvaII GGWCC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 16, 112
BcoDI GTCTC 1 cut(s) 267
BisI GCNGC 1 cut(s) 186
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 16, 112
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmrFI CCNGG 2 cut(s) 16, 112
BmsI GCATC 3 cut(s) 83, 197, 337
Bpu1102I GCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 16, 112
BseGI GGATG 2 cut(s) 74, 229
BseLI CCNNNNNNNGG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 51, 283
Bsp1720I GCTNAGC 1 cut(s) 206
BspACI CCGC 3 cut(s) 79, 180, 203
BspPI GGATC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 267
BssMI GATC 2 cut(s) 51, 283
BssNAI GTATAC 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 16, 112
Bst4CI ACNGT 4 cut(s) 94, 121, 337, 362
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 74, 229
BstKTI GATC 2 cut(s) 54, 286
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 51, 283
BstNI CCWGG 2 cut(s) 16, 112
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 14, 110
BstV1I GCAGC 1 cut(s) 172
BstZ17I GTATAC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 74, 229
BtsIMutI CAGTG 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 5, 338
CviAII CATG 1 cut(s) 341
CviJI RGCY 5 cut(s) 14, 35, 60, 185, 253
CviKI_1 RGCY 5 cut(s) 14, 35, 60, 185, 253
CviQI GTAC 2 cut(s) 5, 338
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 53, 285
DpnII GATC 2 cut(s) 51, 283
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 14, 110
FaeI CATG 1 cut(s) 344
FaiI YATR 5 cut(s) 23, 117, 342, 356, 367
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 86
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 61, 236
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
HapII CCGG 1 cut(s) 172
Hin1II CATG 1 cut(s) 344
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 316
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 4 cut(s) 7, 117, 307, 331
Hpy188I TCNGA 2 cut(s) 272, 288
Hpy188III TCNNGA 3 cut(s) 55, 64, 320
Hpy8I GTNNAC 4 cut(s) 7, 117, 307, 331
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 4 cut(s) 94, 121, 337, 362
HpyCH4V TGCA 2 cut(s) 188, 365
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 51, 283
LmnI GCTCC 2 cut(s) 182, 355
LpnPI CCDG 8 cut(s) 28, 68, 97, 124, 180, 185, 190, 291
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 3 cut(s) 83, 197, 337
MaeIII GTNAC 2 cut(s) 39, 198
MalI GATC 2 cut(s) 53, 285
MboI GATC 2 cut(s) 51, 283
MboII GAAGA 1 cut(s) 251
MluCI AATT 4 cut(s) 124, 152, 161, 264
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 1 cut(s) 282
MseI TTAA 2 cut(s) 123, 306
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 16, 112
MvaI CCWGG 2 cut(s) 16, 112
NdeII GATC 2 cut(s) 51, 283
NlaIII CATG 1 cut(s) 344
NspI RCATGY 1 cut(s) 344
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PsiI TTATAA 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 14, 110
PspGI CCWGG 2 cut(s) 14, 110
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 2 cut(s) 6, 339
RsaNI GTAC 2 cut(s) 5, 338
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 123, 306
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 51, 283
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 16, 112
SetI ASST 5 cut(s) 37, 62, 169, 187, 255
SfaNI GCATC 3 cut(s) 83, 197, 337
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 4 cut(s) 124, 152, 161, 264
SsiI CCGC 3 cut(s) 79, 180, 203
StyD4I CCNGG 2 cut(s) 14, 110
TaaI ACNGT 4 cut(s) 94, 121, 337, 362
TasI AATT 4 cut(s) 124, 152, 161, 264
TatI WGTACW 1 cut(s) 337
Tru1I TTAA 2 cut(s) 123, 306
Tru9I TTAA 2 cut(s) 123, 306
TscAI CASTG 1 cut(s) 97
TseI GCWGC 1 cut(s) 185
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 174
XceI RCATGY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.