Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012781

Physical Location & Seq

Genomic Coordinates Forward (+)

25528023 .. 25533472

Gene Structure 5450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACGCTTTACATTGGTCGCGAGTCATCAAAGCTCTGGAAGAGAATTTGCGCTGAGGTCATCACCGAGATCAACCTCCTTGCCGCGAATTGGAAGTATCTTCTTGCCGGTCTTGTTTGTCAGTACATACATGGTCTAGCTGCTCGAGGAGTTCATTATATACATCGGCCAGGGCCAACACTACAGGATGCTGGCTTCTTTCTTCTTCCGGAACTCGGGCAAGACAGAGCTTATATCAGTGAGACCCTGTTCAGCTTCATCTTTTTATCCTTTGTGTTGTGGACTTTTCATCCTTTCATTTTCAAGAGCAAAAAGATATACACAGTTCTACTATGGTGCAGGGTTCTAGCATTCTTAGTGGCATCTCAATTTCTCCGGATTATCACATTCTATTCCACCCAGCTTCCTGGTCCAAATTACCATTGTCGTGAGGGTTCTAAACTTGCCAGGCTGCCTCCTCCGGATAGCGTATTTGAAGTCCTCTTGATCAATTTTCCGAGGGGTGTACTTTATGGTTGTGGTGATTTGATTTTCTCATCGCACATGATATTTAGTCTTGTCTTTGTGCGCACTTATCAGAAATACGGTACACAAAGATTTATAAAGCAGTTAGCTTGGTTACTCGTTGTGATCCAGAGTTTCTTGATTGTGGCATCGCGCAAGCATTACACGGTTGACGTTGTTGTAGCATGGTATACTGTTAATTTGGTTGTATTCTTTATTGACAAGAAATTGGCAGAATTACCTGACCGGACAAATGGAGCTGCATCTCTCTTGTTACCCCTAAGTACGAAGGACAAAGATAGTAAGACCAAAGAAGAGAATCACAAGCTCTTGAATGGAATCTCCGGAGACCCTGCTGATAGGAGGCAAAGAACTCAAGTTAACGGCAAGACTCTGGACGAGGTAAACACAGTACATGTTGATGCTACAATGAACGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

316

Amino Acids

35.91

Weight (kDa)

9.41

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37940 AT2G37940 AT3G54020
fragaria_vesca	FvH4_6g12480 FvH4_6g12480
malus_domestica	MD04G1141900.v1.1 MD12G1156500.v1.1
prunus_persica	Prupe.6G267300_v2.0.a1
pyrus_communis	pycom04g12890 pycom12g14860
rosa_chinensis	RchiOBHm_Chr3g0464301
rosa_laevigata	RLG00000024710
rosa_roxburghii	Rroxscaffold_6G00415830
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133300 Rh3CG135600 Rh3DG134800
rosa_wichuraiana	Rw3G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
Acc16I	TGCGCA	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	3 cut(s)	21, 86, 658
AccIII	TCCGGA	4 cut(s)	208, 375, 460, 848
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	5 cut(s)	125, 507, 589, 790, 918
AfiI	CCNNNNNNNGG	2 cut(s)	90, 215
AflIII	ACRYGT	1 cut(s)	919
AgsI	TTSAA	3 cut(s)	304, 476, 838
AjnI	CCWGG	3 cut(s)	169, 406, 446
AluBI	AGCT	8 cut(s)	34, 140, 230, 255, 403, 614, 764, 832
AluI	AGCT	8 cut(s)	34, 140, 230, 255, 403, 614, 764, 832
Alw26I	GTCTC	2 cut(s)	236, 846
AlwI	GGATC	1 cut(s)	625
Ama87I	CYCGRG	2 cut(s)	144, 215
Aor13HI	TCCGGA	4 cut(s)	208, 375, 460, 848
AoxI	GGCC	2 cut(s)	167, 173
ApeKI	GCWGC	3 cut(s)	140, 451, 764
ApoI	RAATTY	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	53, 570, 660
AspS9I	GGNCC	2 cut(s)	173, 410
AsuHPI	GGTGA	2 cut(s)	55, 533
AvaI	CYCGRG	2 cut(s)	144, 215
AvaII	GGWCC	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	127, 438, 751
BceAI	ACGGC	1 cut(s)	904
BciT130I	CCWGG	3 cut(s)	171, 408, 448
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	2 cut(s)	236, 846
BfaI	CTAG	2 cut(s)	137, 347
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	4 cut(s)	84, 141, 452, 765
BlsI	GCNGC	4 cut(s)	85, 142, 453, 766
Bme1390I	CCNGG	3 cut(s)	171, 408, 448
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	2 cut(s)	144, 215
BmgT120I	GGNCC	2 cut(s)	173, 410
BmrFI	CCNGG	3 cut(s)	171, 408, 448
BmsI	GCATC	5 cut(s)	178, 371, 662, 776, 916
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	864
BsaI	GGTCTC	2 cut(s)	236, 846
BsaJI	CCNNGG	2 cut(s)	170, 497
BsaWI	WCCGGW	5 cut(s)	208, 375, 460, 750, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 215
Bse118I	RCCGGY	1 cut(s)	107
BseAI	TCCGGA	4 cut(s)	208, 375, 460, 848
BseBI	CCWGG	3 cut(s)	171, 408, 448
BseDI	CCNNGG	2 cut(s)	170, 497
BseGI	GGATG	2 cut(s)	193, 289
BseLI	CCNNNNNNNGG	2 cut(s)	90, 215
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	2 cut(s)	162, 447
BseXI	GCAGC	3 cut(s)	127, 438, 751
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	3 cut(s)	21, 86, 658
BshFI	GGCC	2 cut(s)	169, 175
BsiHKCI	CYCGRG	2 cut(s)	144, 215
BsiSI	CCGG	6 cut(s)	108, 209, 376, 461, 751, 849
BslI	CCNNNNNNNGG	2 cut(s)	90, 215
BsmAI	GTCTC	2 cut(s)	236, 846
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	169, 175
Bso31I	GGTCTC	2 cut(s)	236, 846
BsoBI	CYCGRG	2 cut(s)	144, 215
Bsp13I	TCCGGA	4 cut(s)	208, 375, 460, 848
Bsp143I	GATC	3 cut(s)	69, 486, 630
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	169, 175
BspCNI	CTCAG	1 cut(s)	46
BspEI	TCCGGA	4 cut(s)	208, 375, 460, 848
BspFNI	CGCG	3 cut(s)	21, 86, 658
BspPI	GGATC	1 cut(s)	625
BspTNI	GGTCTC	2 cut(s)	236, 846
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	170, 497
BssMI	GATC	3 cut(s)	69, 486, 630
BssNAI	GTATAC	1 cut(s)	696
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	3 cut(s)	171, 408, 448
Bst4CI	ACNGT	6 cut(s)	325, 587, 673, 700, 916, 941
Bst6I	CTCTTC	2 cut(s)	35, 813
BstC8I	GCNNGC	2 cut(s)	193, 662
BstDEI	CTNAG	3 cut(s)	54, 355, 785
BstF5I	GGATG	2 cut(s)	193, 289
BstFNI	CGCG	3 cut(s)	21, 86, 658
BstHHI	GCGC	3 cut(s)	53, 570, 660
BstKTI	GATC	3 cut(s)	72, 489, 633
BstMAI	GTCTC	2 cut(s)	236, 846
BstMBI	GATC	3 cut(s)	69, 486, 630
BstNI	CCWGG	3 cut(s)	171, 408, 448
BstNSI	RCATGY	1 cut(s)	923
BstSCI	CCNGG	3 cut(s)	169, 406, 446
BstSFI	CTRYAG	1 cut(s)	182
BstUI	CGCG	3 cut(s)	21, 86, 658
BstV1I	GCAGC	3 cut(s)	127, 438, 751
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	696
BsuRI	GGCC	2 cut(s)	169, 175
BtgZI	GCGATG	2 cut(s)	522, 639
BtsCI	GGATG	2 cut(s)	193, 289
BtsIMutI	CAGTG	1 cut(s)	244
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	193, 662
CfoI	GCGC	3 cut(s)	53, 570, 660
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	173, 410
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	5 cut(s)	124, 506, 588, 789, 917
CviAII	CATG	4 cut(s)	131, 544, 690, 920
CviQI	GTAC	5 cut(s)	124, 506, 588, 789, 917
DdeI	CTNAG	3 cut(s)	54, 355, 785
DpnI	GATC	3 cut(s)	71, 488, 632
DpnII	GATC	3 cut(s)	69, 486, 630
EaeI	YGGCCR	1 cut(s)	167
Eam1104I	CTCTTC	2 cut(s)	35, 813
EarI	CTCTTC	2 cut(s)	35, 813
Eco31I	GGTCTC	2 cut(s)	236, 846
Eco47I	GGWCC	1 cut(s)	410
Eco88I	CYCGRG	2 cut(s)	144, 215
EcoRII	CCWGG	3 cut(s)	169, 406, 446
FaeI	CATG	4 cut(s)	134, 547, 693, 923
FatI	CATG	4 cut(s)	130, 543, 689, 919
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	4 cut(s)	84, 141, 452, 765
FokI	GGATG	2 cut(s)	200, 276
Fsp4HI	GCNGC	4 cut(s)	84, 141, 452, 765
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	2 cut(s)	137, 347
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	3 cut(s)	52, 569, 659
GluI	GCNGC	4 cut(s)	84, 141, 452, 765
GsaI	CCCAGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	169, 175
HapII	CCGG	6 cut(s)	108, 209, 376, 461, 751, 849
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	3 cut(s)	53, 570, 660
Hin1II	CATG	4 cut(s)	134, 547, 693, 923
Hin6I	GCGC	3 cut(s)	51, 568, 658
HinP1I	GCGC	3 cut(s)	51, 568, 658
HincII	GTYRAC	2 cut(s)	676, 886
HindII	GTYRAC	2 cut(s)	676, 886
HinfI	GANTC	4 cut(s)	23, 823, 843, 895
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	6 cut(s)	108, 209, 376, 461, 751, 849
HphI	GGTGA	2 cut(s)	55, 533
Hpy166II	GTNNAC	7 cut(s)	282, 506, 590, 676, 696, 886, 910
Hpy188I	TCNGA	2 cut(s)	498, 579
Hpy8I	GTNNAC	7 cut(s)	282, 506, 590, 676, 696, 886, 910
HpyAV	CCTTC	1 cut(s)	787
HpyCH4III	ACNGT	6 cut(s)	325, 587, 673, 700, 916, 941
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	3 cut(s)	339, 767, 944
HpyF3I	CTNAG	3 cut(s)	54, 355, 785
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	4 cut(s)	134, 547, 693, 923
HspAI	GCGC	3 cut(s)	51, 568, 658
Kpn2I	TCCGGA	4 cut(s)	208, 375, 460, 848
Ksp22I	TGATCA	1 cut(s)	486
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	69, 486, 630
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	3 cut(s)	127, 438, 751
LweI	GCATC	5 cut(s)	178, 371, 662, 776, 916
MaeI	CTAG	2 cut(s)	137, 347
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	618, 777
MalI	GATC	3 cut(s)	71, 488, 632
MboI	GATC	3 cut(s)	69, 486, 630
MboII	GAAGA	5 cut(s)	52, 92, 194, 197, 830
MluCI	AATT	8 cut(s)	45, 88, 368, 415, 490, 703, 731, 740
MlyI	GAGTC	2 cut(s)	32, 889
MroI	TCCGGA	4 cut(s)	208, 375, 460, 848
MseI	TTAA	2 cut(s)	702, 885
MslI	CAYNNNNRTG	2 cut(s)	426, 924
MspI	CCGG	6 cut(s)	108, 209, 376, 461, 751, 849
MspR9I	CCNGG	3 cut(s)	171, 408, 448
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	3 cut(s)	171, 408, 448
MvnI	CGCG	3 cut(s)	21, 86, 658
NdeII	GATC	3 cut(s)	69, 486, 630
NlaIII	CATG	4 cut(s)	134, 547, 693, 923
NruI	TCGCGA	1 cut(s)	21
NsbI	TGCGCA	1 cut(s)	569
NspI	RCATGY	1 cut(s)	923
PaeR7I	CTCGAG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	919
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	823, 843
PkrI	GCNGC	4 cut(s)	85, 142, 453, 766
PleI	GAGTC	2 cut(s)	31, 889
PpsI	GAGTC	2 cut(s)	31, 889
PscI	ACATGT	1 cut(s)	919
PsiI	TTATAA	1 cut(s)	602
Psp6I	CCWGG	3 cut(s)	169, 406, 446
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	3 cut(s)	169, 406, 446
PspPI	GGNCC	2 cut(s)	173, 410
PspXI	VCTCGAGB	1 cut(s)	144
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	5 cut(s)	125, 507, 589, 790, 918
RsaNI	GTAC	5 cut(s)	124, 506, 588, 789, 917
RseI	CAYNNNNRTG	2 cut(s)	426, 924
SaqAI	TTAA	2 cut(s)	702, 885
SatI	GCNGC	4 cut(s)	84, 141, 452, 765
Sau3AI	GATC	3 cut(s)	69, 486, 630
Sau96I	GGNCC	2 cut(s)	173, 410
SchI	GAGTC	2 cut(s)	32, 889
ScrFI	CCNGG	3 cut(s)	171, 408, 448
SfaNI	GCATC	5 cut(s)	178, 371, 662, 776, 916
SfcI	CTRYAG	1 cut(s)	182
Sfr274I	CTCGAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	426, 924
SmlI	CTYRAG	2 cut(s)	144, 879
SmoI	CTYRAG	2 cut(s)	144, 879
Sse9I	AATT	8 cut(s)	45, 88, 368, 415, 490, 703, 731, 740
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	137, 347
StyD4I	CCNGG	3 cut(s)	169, 406, 446
TaaI	ACNGT	6 cut(s)	325, 587, 673, 700, 916, 941
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	1 cut(s)	145
TasI	AATT	8 cut(s)	45, 88, 368, 415, 490, 703, 731, 740
TatI	WGTACW	3 cut(s)	123, 505, 916
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	823, 843
Tru1I	TTAA	2 cut(s)	702, 885
Tru9I	TTAA	2 cut(s)	702, 885
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	140, 451, 764
TspDTI	ATGAA	4 cut(s)	143, 247, 278, 286
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	923
XhoI	CTCGAG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	695
XspI	CTAG	2 cut(s)	137, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.