Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012781

Physical Location & Seq

Genomic Coordinates Forward (+)

37971807 .. 37975952

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACGCTTTACATTGGTCGCGAGTCGTCTAAGAAGCTTTGGAAGAGGATTTGCGCCGAGGTAGTCACCGAGATCAATCTACTCGCTGCGAATTGGAAGTACCTTCTTGCCGGCCTTGTTGGTCAGTACATACATGGTCTAGCAGCTCGAGGAGTTCATTATATACATCGTCCAGGGCCAACACTGCAGGATGCTGGTTTCTTTCTTCTTCCGGAGCTTGGGGAAGAGAGAGCTTACATCAGTGAAACCTTGTTCACCTTCATCTTTTTATCCTTTGTCTTGTGGACTTTCCATCCTTTCATTTTCAAGAGCAAAAAGATATACACAGTTCTAATATGGTGTAGGGTTCTAGCATTTTTAGTGACTTGTCAGTTTCTTCGAATCCTCACATTCTACTCCACCCAGCTTCCTGGTCCAAATTACCATTGTCGTGAGGGCTCTAGACTTGCTAGGTTGCCTCCTCCAGAGACTGTATTTGAGGCCCTTGTGATCGTTCCGAGGGGGGTAAATATGGCACACAAAAAGATTTATAAAGCAGTTGGCTTGGATGCTCGTTGTGATCCAGAGTTTGTTGATTGTGGCATCCCGCAAACATTTACACGGTTGATGTTGTACACTGTTAATTTGGTTGTATTCTTTATCGACAAGAAATTAGCAGAATTACCTGACCGGACAGCTACATCATTGTTGTTACCACTAAGCACGAAGGACAAGGACAGCAAGACTAAAGAAGAGAATCACAAGCTATTGAATGGAATGTCTGGAGACCCCGCTGATCGGAGGCAAAGAACTCAAGTTAATGGCAAGATTCTAGAAGACGGAAACACAGTAGTGCATGCCGATGCTACAATGAACGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

287

Amino Acids

32.55

Weight (kDa)

9.15

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37940 AT2G37940 AT3G54020
fragaria_vesca	FvH4_6g12480 FvH4_6g12480
malus_domestica	MD04G1141900.v1.1 MD12G1156500.v1.1
prunus_persica	Prupe.6G267300_v2.0.a1
pyrus_communis	pycom04g12890 pycom12g14860
rosa_chinensis	RchiOBHm_Chr3g0464301
rosa_laevigata	RLG00000024710
rosa_roxburghii	Rroxscaffold_6G00415830
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133300 Rh3CG135600 Rh3DG134800
rosa_wichuraiana	Rw3G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	2 cut(s)	587, 771
AclWI	GGATC	1 cut(s)	554
AfaI	GTAC	3 cut(s)	101, 128, 614
AfiI	CCNNNNNNNGG	2 cut(s)	218, 777
AgsI	TTSAA	2 cut(s)	307, 751
AjnI	CCWGG	2 cut(s)	172, 409
AleI	CACNNNNGTG	1 cut(s)	830
AluBI	AGCT	7 cut(s)	37, 146, 217, 233, 406, 677, 745
AluI	AGCT	7 cut(s)	37, 146, 217, 233, 406, 677, 745
Alw26I	GTCTC	2 cut(s)	461, 759
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	3 cut(s)	112, 176, 480
ApeKI	GCWGC	2 cut(s)	86, 143
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	3 cut(s)	176, 413, 481
AsuHPI	GGTGA	2 cut(s)	58, 247
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	822
BbvI	GCAGC	2 cut(s)	73, 155
BccI	CCATC	1 cut(s)	300
BciT130I	CCWGG	2 cut(s)	174, 411
BcoDI	GTCTC	2 cut(s)	461, 759
BfaI	CTAG	5 cut(s)	140, 350, 441, 450, 812
BfmI	CTRYAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	87, 144
BlsI	GCNGC	2 cut(s)	88, 145
Bme1390I	CCNGG	2 cut(s)	174, 411
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	3 cut(s)	176, 413, 481
BmrFI	CCNGG	2 cut(s)	174, 411
BmsI	GCATC	4 cut(s)	181, 538, 591, 832
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	2 cut(s)	447, 783
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	777
BsaI	GGTCTC	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	57, 173, 497
BsaWI	WCCGGW	2 cut(s)	211, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 777
Bse118I	RCCGGY	1 cut(s)	110
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	174, 411
BseDI	CCNNGG	3 cut(s)	57, 173, 497
BseGI	GGATG	4 cut(s)	196, 292, 553, 582
BseLI	CCNNNNNNNGG	2 cut(s)	218, 777
BseRI	GAGGAG	2 cut(s)	165, 450
BseXI	GCAGC	2 cut(s)	73, 155
BseYI	CCCAGC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	114, 178, 482
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	111, 212, 670
BslI	CCNNNNNNNGG	2 cut(s)	218, 777
BsmAI	GTCTC	2 cut(s)	461, 759
BsnI	GGCC	3 cut(s)	114, 178, 482
Bso31I	GGTCTC	1 cut(s)	759
BsoBI	CYCGRG	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	72, 489, 559, 775
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	2 cut(s)	587, 771
BspANI	GGCC	3 cut(s)	114, 178, 482
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	554
BspT104I	TTCGAA	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	759
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	612
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	57, 173, 497
BssMI	GATC	4 cut(s)	72, 489, 559, 775
Bst2UI	CCWGG	2 cut(s)	174, 411
Bst4CI	ACNGT	6 cut(s)	328, 472, 603, 619, 829, 857
Bst6I	CTCTTC	3 cut(s)	38, 219, 726
BstAUI	TGTACA	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	112, 837
BstDEI	CTNAG	2 cut(s)	30, 698
BstF5I	GGATG	4 cut(s)	196, 292, 553, 582
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	4 cut(s)	75, 492, 562, 778
BstMAI	GTCTC	2 cut(s)	461, 759
BstMBI	GATC	4 cut(s)	72, 489, 559, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	2 cut(s)	174, 411
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	172, 409
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	73, 155
BstV2I	GAAGAC	1 cut(s)	822
BstXI	CCANNNNNNTGG	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	114, 178, 482
BtsCI	GGATG	4 cut(s)	196, 292, 553, 582
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	182, 247, 615
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	112, 837
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	176, 413, 481
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	100, 127, 613
CviAII	CATG	2 cut(s)	134, 836
CviQI	GTAC	3 cut(s)	100, 127, 613
DdeI	CTNAG	2 cut(s)	30, 698
DpnI	GATC	4 cut(s)	74, 491, 561, 777
DpnII	GATC	4 cut(s)	72, 489, 559, 775
Eam1104I	CTCTTC	3 cut(s)	38, 219, 726
EarI	CTCTTC	3 cut(s)	38, 219, 726
Eco24I	GRGCYC	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	172, 409
EcoT38I	GRGCYC	1 cut(s)	440
FaeI	CATG	2 cut(s)	137, 839
FatI	CATG	2 cut(s)	133, 835
FauI	CCCGC	2 cut(s)	594, 778
Fnu4HI	GCNGC	2 cut(s)	87, 144
FokI	GGATG	4 cut(s)	203, 279, 560, 569
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	87, 144
FspBI	CTAG	5 cut(s)	140, 350, 441, 450, 812
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	87, 144
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	2 cut(s)	447, 783
HaeIII	GGCC	3 cut(s)	114, 178, 482
HapII	CCGG	3 cut(s)	111, 212, 670
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	137, 839
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	23, 381, 736, 808
HpaII	CCGG	3 cut(s)	111, 212, 670
HphI	GGTGA	2 cut(s)	58, 247
Hpy166II	GTNNAC	3 cut(s)	255, 285, 615
Hpy188I	TCNGA	2 cut(s)	498, 780
Hpy188III	TCNNGA	9 cut(s)	20, 212, 307, 431, 441, 464, 563, 762, 812
Hpy8I	GTNNAC	3 cut(s)	255, 285, 615
HpyAV	CCTTC	3 cut(s)	113, 268, 700
HpyCH4III	ACNGT	6 cut(s)	328, 472, 603, 619, 829, 857
HpyCH4V	TGCA	3 cut(s)	187, 835, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	30, 698
Hsp92II	CATG	2 cut(s)	137, 839
HspAI	GCGC	1 cut(s)	54
Kpn2I	TCCGGA	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	72, 489, 559, 775
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	2 cut(s)	73, 155
LweI	GCATC	4 cut(s)	181, 538, 591, 832
MaeI	CTAG	5 cut(s)	140, 350, 441, 450, 812
MaeIII	GTNAC	3 cut(s)	64, 361, 690
MalI	GATC	4 cut(s)	74, 491, 561, 777
MboI	GATC	4 cut(s)	72, 489, 559, 775
MboII	GAAGA	7 cut(s)	55, 197, 200, 236, 368, 743, 827
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	5 cut(s)	91, 418, 622, 650, 659
MlyI	GAGTC	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	211
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	2 cut(s)	621, 798
MslI	CAYNNNNRTG	3 cut(s)	429, 830, 840
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	3 cut(s)	111, 212, 670
MspR9I	CCNGG	2 cut(s)	174, 411
MvaI	CCWGG	2 cut(s)	174, 411
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	184
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	72, 489, 559, 775
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	137, 839
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	64, 361
NruI	TCGCGA	1 cut(s)	21
NspI	RCATGY	1 cut(s)	839
NspV	TTCGAA	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	830
PaeI	GCATGC	1 cut(s)	839
PaeR7I	CTCGAG	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	381, 736, 808
PkrI	GCNGC	2 cut(s)	88, 145
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	172, 409
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	2 cut(s)	172, 409
PspPI	GGNCC	3 cut(s)	176, 413, 481
PspXI	VCTCGAGB	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	470
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	3 cut(s)	101, 128, 614
RsaNI	GTAC	3 cut(s)	100, 127, 613
RseI	CAYNNNNRTG	3 cut(s)	429, 830, 840
SaqAI	TTAA	2 cut(s)	621, 798
SatI	GCNGC	2 cut(s)	87, 144
Sau3AI	GATC	4 cut(s)	72, 489, 559, 775
Sau96I	GGNCC	3 cut(s)	176, 413, 481
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	174, 411
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	4 cut(s)	181, 538, 591, 832
SfcI	CTRYAG	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	3 cut(s)	429, 830, 840
SmlI	CTYRAG	2 cut(s)	147, 792
SmoI	CTYRAG	2 cut(s)	147, 792
SphI	GCATGC	1 cut(s)	839
Sse9I	AATT	5 cut(s)	91, 418, 622, 650, 659
SsiI	CCGC	2 cut(s)	587, 771
SspMI	CTAG	5 cut(s)	140, 350, 441, 450, 812
StyD4I	CCNGG	2 cut(s)	172, 409
TaaI	ACNGT	6 cut(s)	328, 472, 603, 619, 829, 857
TaqI	TCGA	3 cut(s)	148, 379, 642
TasI	AATT	5 cut(s)	91, 418, 622, 650, 659
TatI	WGTACW	2 cut(s)	126, 612
TfiI	GAWTC	3 cut(s)	381, 736, 808
Tru1I	TTAA	2 cut(s)	621, 798
Tru9I	TTAA	2 cut(s)	621, 798
TscAI	CASTG	3 cut(s)	189, 247, 622
TseFI	GTSAC	2 cut(s)	64, 361
TseI	GCWGC	2 cut(s)	86, 143
Tsp45I	GTSAC	2 cut(s)	64, 361
TspDTI	ATGAA	3 cut(s)	146, 250, 289
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	3 cut(s)	189, 247, 622
VpaK11BI	GGWCC	1 cut(s)	413
XbaI	TCTAGA	2 cut(s)	440, 811
XceI	RCATGY	1 cut(s)	839
XhoI	CTCGAG	1 cut(s)	147
XspI	CTAG	5 cut(s)	140, 350, 441, 450, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.