Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012781

Physical Location & Seq

Genomic Coordinates Reverse (-)

7552459 .. 7556433

Gene Structure 3975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12480.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACGCTTTACATTGGCCGTGAGTCGTCCAAGCTTTGGAAGAGAATTTGCGCTGAGTTAGTTACCGAGATCAATTTACTTGCGGCGAATTGGAAGTATCTTCTTGCTGGTATTGTTGGTCAGTACATACATGGTCTAGCAGCTCGAGGAGTTCATTACATACATCGTCCAGGGCCAACACTCCAGGATGCTGGTTTCTTTCTTCTTCCGGAGCTGGGGGAAGAGAGAGCCTACATCAGTGAAACCCTGTTCACCTTCATCTTTTTATCCTTTGTCTTGTGGACTTTTCATCCTTTCATATTCAAGAGCAAAAAGATATACACAGTTCTAATATGGTGTAGGGTTCTAGCATTTTTAGTGACTTGTCAATTTCTTCGAATCCTCACATTCTACTCCACCCAGCTTCCTGGTCCAAATTACCATTGTCGTGAGGGATCTAAACTTGCCAGGTTGCCTCCTCCAGAGACTGTATTTGAGGCCCTTGTGATTGTGCCAAAGGGTGTACTATATGGCTGTGGCGACTTGATTTTTTCATCACACATGATCTTTAGTCTCACCTTTGTGCGCACTTATCAGAAATACGGCACACAAAGATTTATAAAGCAGTTGGCTTGGTTGCTCGTTGTGATCCAGAGTTTGTTGATTGTGGCATCCCGCAAACATTACACAGTTGATGTTGTTGTTGCATGGTACACTGTTAATTTGGTTGTATTCTTTATCGACAAGAAATTAGCAGAATTACCTGACCGGTCAGTTGCATCATTGTTGTTACCACTAAGCACAAAGGACAAGGACAGCAAGACTAAAGAAGAGAATCACAAGCTATTGAATGGAATGTCTGGAGACCCTGCTGATCGGAGGCAAAGAACTCAAGTTAATGGCAAGATATCGGAAGATGGAAACACAGTAGTGCATGCCGATGCTACAATGAACGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045140 GO:0046467 GO:0071704 GO:0098791 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

PAP2_C

Protein Analysis

314

Amino Acids

35.58

Weight (kDa)

9.32

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2_C	PF14360	171 - 230	1.4e-20	PAP2 superfamily C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37940 AT2G37940 AT3G54020
fragaria_vesca	FvH4_6g12480 FvH4_6g12480
malus_domestica	MD04G1141900.v1.1 MD12G1156500.v1.1
prunus_persica	Prupe.6G267300_v2.0.a1
pyrus_communis	pycom04g12890 pycom12g14860
rosa_chinensis	RchiOBHm_Chr3g0464301
rosa_laevigata	RLG00000024710
rosa_roxburghii	Rroxscaffold_6G00415830
rosa_rugosa	Rorug03G0071300
rosa_samantha	Rh3BG133300 Rh3CG135600 Rh3DG134800
rosa_wichuraiana	Rw3G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc16I	TGCGCA	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	2 cut(s)	83, 655
AclWI	GGATC	2 cut(s)	442, 622
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	3 cut(s)	125, 504, 692
AfiI	CCNNNNNNNGG	2 cut(s)	36, 215
AgeI	ACCGGT	1 cut(s)	747
AgsI	TTSAA	2 cut(s)	304, 829
AjnI	CCWGG	4 cut(s)	169, 183, 406, 446
AleI	CACNNNNGTG	2 cut(s)	560, 908
AluBI	AGCT	5 cut(s)	34, 143, 214, 403, 823
AluI	AGCT	5 cut(s)	34, 143, 214, 403, 823
Alw26I	GTCTC	3 cut(s)	458, 557, 837
AlwI	GGATC	2 cut(s)	442, 622
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	3 cut(s)	16, 173, 477
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	45
AsiGI	ACCGGT	1 cut(s)	747
AspLEI	GCGC	2 cut(s)	53, 567
AspS9I	GGNCC	3 cut(s)	173, 410, 478
AsuHPI	GGTGA	2 cut(s)	244, 547
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	890
BceAI	ACGGC	2 cut(s)	3, 598
BciT130I	CCWGG	4 cut(s)	171, 185, 408, 448
BcoDI	GTCTC	3 cut(s)	458, 557, 837
BfaI	CTAG	2 cut(s)	137, 347
BisI	GCNGC	2 cut(s)	84, 141
BlsI	GCNGC	2 cut(s)	85, 142
Bme1390I	CCNGG	4 cut(s)	171, 185, 408, 448
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	173, 410, 478
BmrFI	CCNGG	4 cut(s)	171, 185, 408, 448
BmsI	GCATC	4 cut(s)	178, 659, 767, 910
BpmI	CTGGAG	3 cut(s)	167, 444, 861
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	855
BsaI	GGTCTC	1 cut(s)	837
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	208, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 215
Bse118I	RCCGGY	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	4 cut(s)	171, 185, 408, 448
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	193, 289, 650
BseLI	CCNNNNNNNGG	2 cut(s)	36, 215
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	2 cut(s)	162, 447
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	2 cut(s)	214, 399
BshFI	GGCC	3 cut(s)	18, 175, 479
BshTI	ACCGGT	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	209, 748
BslI	CCNNNNNNNGG	2 cut(s)	36, 215
BsmAI	GTCTC	3 cut(s)	458, 557, 837
BsnI	GGCC	3 cut(s)	18, 175, 479
Bso31I	GGTCTC	1 cut(s)	837
BsoBI	CYCGRG	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	376
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	5 cut(s)	69, 434, 543, 627, 853
BspACI	CCGC	2 cut(s)	83, 655
BspANI	GGCC	3 cut(s)	18, 175, 479
BspCNI	CTCAG	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	208
BspPI	GGATC	2 cut(s)	442, 622
BspT104I	TTCGAA	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	747
BssAI	RCCGGY	1 cut(s)	747
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	5 cut(s)	69, 434, 543, 627, 853
Bst2UI	CCWGG	4 cut(s)	171, 185, 408, 448
Bst4CI	ACNGT	6 cut(s)	325, 469, 670, 697, 907, 935
Bst6I	CTCTTC	3 cut(s)	35, 216, 804
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	2 cut(s)	54, 776
BstF5I	GGATG	3 cut(s)	193, 289, 650
BstHHI	GCGC	2 cut(s)	53, 567
BstKTI	GATC	5 cut(s)	72, 437, 546, 630, 856
BstMAI	GTCTC	3 cut(s)	458, 557, 837
BstMBI	GATC	5 cut(s)	69, 434, 543, 627, 853
BstNI	CCWGG	4 cut(s)	171, 185, 408, 448
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	4 cut(s)	169, 183, 406, 446
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	434
BstXI	CCANNNNNNTGG	2 cut(s)	191, 407
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	18, 175, 479
BtsCI	GGATG	3 cut(s)	193, 289, 650
BtsIMutI	CAGTG	2 cut(s)	244, 693
Cac8I	GCNNGC	1 cut(s)	915
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	2 cut(s)	53, 567
Cfr10I	RCCGGY	1 cut(s)	747
Cfr13I	GGNCC	3 cut(s)	173, 410, 478
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	124, 503, 691
CspAI	ACCGGT	1 cut(s)	747
CviAII	CATG	4 cut(s)	131, 541, 687, 914
CviQI	GTAC	3 cut(s)	124, 503, 691
DdeI	CTNAG	2 cut(s)	54, 776
DpnI	GATC	5 cut(s)	71, 436, 545, 629, 855
DpnII	GATC	5 cut(s)	69, 434, 543, 627, 853
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	3 cut(s)	35, 216, 804
EarI	CTCTTC	3 cut(s)	35, 216, 804
Eco31I	GGTCTC	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	888
Eco47I	GGWCC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRII	CCWGG	4 cut(s)	169, 183, 406, 446
EcoRV	GATATC	1 cut(s)	888
FaeI	CATG	4 cut(s)	134, 544, 690, 917
FatI	CATG	4 cut(s)	130, 540, 686, 913
FauI	CCCGC	1 cut(s)	662
Fnu4HI	GCNGC	2 cut(s)	84, 141
FokI	GGATG	3 cut(s)	200, 276, 637
Fsp4HI	GCNGC	2 cut(s)	84, 141
FspAI	RTGCGCAY	1 cut(s)	566
FspBI	CTAG	2 cut(s)	137, 347
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	2 cut(s)	52, 566
GluI	GCNGC	2 cut(s)	84, 141
GsaI	CCCAGC	2 cut(s)	218, 403
GsuI	CTGGAG	3 cut(s)	167, 444, 861
HaeIII	GGCC	3 cut(s)	18, 175, 479
HapII	CCGG	2 cut(s)	209, 748
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	53, 567
Hin1II	CATG	4 cut(s)	134, 544, 690, 917
Hin6I	GCGC	2 cut(s)	51, 565
HinP1I	GCGC	2 cut(s)	51, 565
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	23, 378, 814
HpaII	CCGG	2 cut(s)	209, 748
HphI	GGTGA	2 cut(s)	244, 547
Hpy166II	GTNNAC	4 cut(s)	252, 282, 503, 693
Hpy188I	TCNGA	3 cut(s)	576, 858, 892
Hpy188III	TCNNGA	6 cut(s)	209, 304, 428, 461, 631, 840
Hpy8I	GTNNAC	4 cut(s)	252, 282, 503, 693
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	6 cut(s)	325, 469, 670, 697, 907, 935
HpyCH4V	TGCA	4 cut(s)	686, 758, 913, 938
HpyF3I	CTNAG	2 cut(s)	54, 776
Hsp92II	CATG	4 cut(s)	134, 544, 690, 917
HspAI	GCGC	2 cut(s)	51, 565
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	69, 434, 543, 627, 853
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	4 cut(s)	178, 659, 767, 910
MaeI	CTAG	2 cut(s)	137, 347
MaeIII	GTNAC	3 cut(s)	61, 358, 768
MalI	GATC	5 cut(s)	71, 436, 545, 629, 855
MboI	GATC	5 cut(s)	69, 434, 543, 627, 853
MboII	GAAGA	8 cut(s)	52, 92, 194, 197, 233, 365, 821, 905
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	8 cut(s)	45, 73, 88, 368, 415, 700, 728, 737
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	7 cut(s)	140, 392, 424, 465, 468, 469, 852
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	2 cut(s)	699, 876
MslI	CAYNNNNRTG	4 cut(s)	426, 560, 908, 918
MspI	CCGG	2 cut(s)	209, 748
MspR9I	CCNGG	4 cut(s)	171, 185, 408, 448
MvaI	CCWGG	4 cut(s)	171, 185, 408, 448
NdeII	GATC	5 cut(s)	69, 434, 543, 627, 853
NlaIII	CATG	4 cut(s)	134, 544, 690, 917
NmuCI	GTSAC	1 cut(s)	358
NsbI	TGCGCA	1 cut(s)	566
NspI	RCATGY	1 cut(s)	917
NspV	TTCGAA	1 cut(s)	376
OliI	CACNNNNGTG	2 cut(s)	560, 908
PaeI	GCATGC	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	378, 814
PflMI	CCANNNNNTGG	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	183
PinAI	ACCGGT	1 cut(s)	747
PkrI	GCNGC	2 cut(s)	85, 142
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	599
Psp6I	CCWGG	4 cut(s)	169, 183, 406, 446
PspFI	CCCAGC	2 cut(s)	214, 399
PspGI	CCWGG	4 cut(s)	169, 183, 406, 446
PspPI	GGNCC	3 cut(s)	173, 410, 478
PspXI	VCTCGAGB	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	3 cut(s)	125, 504, 692
RsaNI	GTAC	3 cut(s)	124, 503, 691
RseI	CAYNNNNRTG	4 cut(s)	426, 560, 908, 918
SaqAI	TTAA	2 cut(s)	699, 876
SatI	GCNGC	2 cut(s)	84, 141
Sau3AI	GATC	5 cut(s)	69, 434, 543, 627, 853
Sau96I	GGNCC	3 cut(s)	173, 410, 478
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	4 cut(s)	171, 185, 408, 448
SetI	ASST	9 cut(s)	36, 145, 216, 257, 405, 452, 560, 745, 825
SfaNI	GCATC	4 cut(s)	178, 659, 767, 910
Sfr274I	CTCGAG	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	376
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	4 cut(s)	426, 560, 908, 918
SmlI	CTYRAG	2 cut(s)	144, 870
SmoI	CTYRAG	2 cut(s)	144, 870
SphI	GCATGC	1 cut(s)	917
Sse9I	AATT	8 cut(s)	45, 73, 88, 368, 415, 700, 728, 737
SsiI	CCGC	2 cut(s)	83, 655
SspMI	CTAG	2 cut(s)	137, 347
StyD4I	CCNGG	4 cut(s)	169, 183, 406, 446
TaaI	ACNGT	6 cut(s)	325, 469, 670, 697, 907, 935
TaqI	TCGA	3 cut(s)	145, 376, 720
TasI	AATT	8 cut(s)	45, 73, 88, 368, 415, 700, 728, 737
TatI	WGTACW	2 cut(s)	123, 502
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	378, 814
Tru1I	TTAA	2 cut(s)	699, 876
Tru9I	TTAA	2 cut(s)	699, 876
TscAI	CASTG	2 cut(s)	244, 700
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	143, 247, 278, 286, 522
TspRI	CASTG	2 cut(s)	244, 700
Van91I	CCANNNNNTGG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	917
XhoI	CTCGAG	1 cut(s)	144
XspI	CTAG	2 cut(s)	137, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.