AT2G38090
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012757
Physical Location & Seq
Forward (+)
15944583 .. 15947096
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38090.1

Sequence Viewer

Length: 897 bp
ATGAACAGAGGAATCGAAGTTATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACCAAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGATACTCCCGACAGATGGTCCAGAGTCGCTGCCATGCTTCCCGGTAAAACAGTCGGAGATGTGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATACCAATCCCTGGTTACGCCTCTGATTCATTCACACTTGATTGGGGTGGCTACGACGGAGCAAGCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAGGATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATTTCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCAAGCATCCATGATATCACAACCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCACCTTGCTCGCCACCTTCCGTAGGAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAACACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTACTTGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCATCGCAATTCGAATCGTACAATGCGTATCTCCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

298

Amino Acids

33.25

Weight (kDa)

5.41

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 73 8.6e-08 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 76 9e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 141 - 187 3e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AccB7I CCANNNNNTGG 1 cut(s) 266
AccII CGCG 2 cut(s) 656, 782
AclWI GGATC 2 cut(s) 375, 388
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 2 cut(s) 114, 818
AcyI GRCGYC 1 cut(s) 815
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 3 cut(s) 153, 266, 698
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 3 cut(s) 65, 466, 600
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 4 cut(s) 469, 501, 783, 815
AluBI AGCT 5 cut(s) 92, 220, 248, 500, 761
AluI AGCT 5 cut(s) 92, 220, 248, 500, 761
Alw26I GTCTC 2 cut(s) 38, 710
AlwI GGATC 2 cut(s) 375, 388
AlwNI CAGNNNCTG 1 cut(s) 761
ApeKI GCWGC 5 cut(s) 167, 647, 650, 758, 761
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 18
AsuII TTCGAA 2 cut(s) 111, 867
AvaII GGWCC 1 cut(s) 156
BamHI GGATCC 1 cut(s) 380
BbsI GAAGAC 2 cut(s) 234, 801
BbvI GCAGC 5 cut(s) 154, 634, 662, 748, 770
BccI CCATC 2 cut(s) 147, 451
BceAI ACGGC 3 cut(s) 411, 579, 581
BcgI CGANNNNNNTGC 2 cut(s) 666, 700
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 38, 710
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 648
BisI GCNGC 8 cut(s) 168, 363, 387, 648, 651, 654, 759, 762
BlsI GCNGC 8 cut(s) 169, 364, 388, 649, 652, 655, 760, 763
Bme1390I CCNGG 2 cut(s) 180, 267
Bme18I GGWCC 1 cut(s) 156
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 79, 382
BmrFI CCNGG 2 cut(s) 180, 267
BmsI GCATC 2 cut(s) 612, 866
BpiI GAAGAC 2 cut(s) 234, 801
Bpu14I TTCGAA 2 cut(s) 111, 867
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 815
BsaJI CCNNGG 3 cut(s) 265, 425, 654
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 266, 698
Bse1I ACTGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 265, 425, 654
BseGI GGATG 2 cut(s) 603, 627
BseLI CCNNNNNNNGG 3 cut(s) 153, 266, 698
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 5 cut(s) 154, 634, 662, 748, 770
Bsh1236I CGCG 2 cut(s) 656, 782
BsiSI CCGG 2 cut(s) 180, 366
BslI CCNNNNNNNGG 3 cut(s) 153, 266, 698
BsmAI GTCTC 2 cut(s) 38, 710
Bsp119I TTCGAA 2 cut(s) 111, 867
Bsp143I GATC 2 cut(s) 201, 380
Bsp19I CCATGG 1 cut(s) 425
BspFNI CGCG 2 cut(s) 656, 782
BspLI GGNNCC 2 cut(s) 79, 382
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 2 cut(s) 375, 388
BspT104I TTCGAA 2 cut(s) 111, 867
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 265, 425, 654
BssMI GATC 2 cut(s) 201, 380
BssNI GRCGYC 1 cut(s) 815
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 190, 347, 622
BstACI GRCGYC 1 cut(s) 815
BstBI TTCGAA 2 cut(s) 111, 867
BstC8I GCNNGC 2 cut(s) 319, 686
BstDSI CCRYGG 2 cut(s) 425, 654
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 2 cut(s) 603, 627
BstFNI CGCG 2 cut(s) 656, 782
BstKTI GATC 2 cut(s) 204, 383
BstMAI GTCTC 2 cut(s) 38, 710
BstMBI GATC 2 cut(s) 201, 380
BstMWI GCNNNNNNNGC 5 cut(s) 395, 545, 600, 653, 662
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 178, 265
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 2 cut(s) 656, 782
BstV1I GCAGC 5 cut(s) 154, 634, 662, 748, 770
BstV2I GAAGAC 2 cut(s) 234, 801
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BtgI CCRYGG 2 cut(s) 425, 654
BtgZI GCGATG 1 cut(s) 843
BtsCI GGATG 2 cut(s) 603, 627
Cac8I GCNNGC 2 cut(s) 319, 686
CaiI CAGNNNCTG 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 156
Cfr42I CCGCGG 1 cut(s) 657
CseI GACGC 2 cut(s) 653, 823
Csp6I GTAC 1 cut(s) 874
CviAII CATG 6 cut(s) 172, 340, 404, 426, 608, 823
CviJI RGCY 8 cut(s) 92, 125, 220, 248, 306, 500, 653, 761
CviKI_1 RGCY 8 cut(s) 92, 125, 220, 248, 306, 500, 653, 761
CviQI GTAC 1 cut(s) 874
DpnI GATC 2 cut(s) 203, 382
DpnII GATC 2 cut(s) 201, 380
DriI GACNNNNNGTC 1 cut(s) 154
Eam1105I GACNNNNNGTC 1 cut(s) 154
EciI GGCGGA 3 cut(s) 349, 373, 413
Eco130I CCWWGG 1 cut(s) 425
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 2 cut(s) 114, 818
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaeI CATG 6 cut(s) 175, 343, 407, 429, 611, 826
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 6 cut(s) 171, 339, 403, 425, 607, 822
FauI CCCGC 1 cut(s) 705
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 8 cut(s) 168, 363, 387, 648, 651, 654, 759, 762
FokI GGATG 2 cut(s) 590, 614
Fsp4HI GCNGC 8 cut(s) 168, 363, 387, 648, 651, 654, 759, 762
FspBI CTAG 1 cut(s) 41
GluI GCNGC 8 cut(s) 168, 363, 387, 648, 651, 654, 759, 762
HapII CCGG 2 cut(s) 180, 366
HgaI GACGC 2 cut(s) 653, 823
Hin1I GRCGYC 1 cut(s) 815
Hin1II CATG 6 cut(s) 175, 343, 407, 429, 611, 826
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 5 cut(s) 12, 162, 281, 635, 869
HpaII CCGG 2 cut(s) 180, 366
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 6 cut(s) 194, 280, 456, 724, 790, 852
Hpy188III TCNNGA 6 cut(s) 41, 65, 146, 159, 641, 836
Hpy8I GTNNAC 1 cut(s) 625
Hpy99I CGWCG 2 cut(s) 314, 817
HpyAV CCTTC 2 cut(s) 702, 725
HpyCH4III ACNGT 3 cut(s) 190, 347, 622
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 545, 600, 653, 662
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 815
Hsp92II CATG 6 cut(s) 175, 343, 407, 429, 611, 826
Ksp22I TGATCA 1 cut(s) 201
KspI CCGCGG 1 cut(s) 657
Kzo9I GATC 2 cut(s) 201, 380
LmnI GCTCC 3 cut(s) 314, 400, 838
Lsp1109I GCAGC 5 cut(s) 154, 634, 662, 748, 770
LweI GCATC 2 cut(s) 612, 866
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 7 cut(s) 24, 269, 323, 347, 503, 511, 542
MalI GATC 2 cut(s) 203, 382
MboI GATC 2 cut(s) 201, 380
MboII GAAGA 7 cut(s) 107, 239, 424, 446, 449, 478, 801
MflI RGATCY 1 cut(s) 380
MluCI AATT 3 cut(s) 107, 449, 863
MluI ACGCGT 1 cut(s) 780
MlyI GAGTC 2 cut(s) 171, 629
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 7 cut(s) 68, 217, 286, 362, 371, 402, 695
MroXI GAANNNNTTC 1 cut(s) 808
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 724
MspA1I CMGCKG 4 cut(s) 92, 656, 712, 761
MspI CCGG 2 cut(s) 180, 366
MspR9I CCNGG 2 cut(s) 180, 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 2 cut(s) 656, 782
MwoI GCNNNNNNNGC 5 cut(s) 395, 545, 600, 653, 662
NciI CCSGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 425
NdeII GATC 2 cut(s) 201, 380
NlaIII CATG 6 cut(s) 175, 343, 407, 429, 611, 826
NlaIV GGNNCC 2 cut(s) 79, 382
NmuCI GTSAC 3 cut(s) 24, 511, 542
NspV TTCGAA 2 cut(s) 111, 867
PcsI WCGNNNNNNNCGW 1 cut(s) 878
PdmI GAANNNNTTC 1 cut(s) 808
PfeI GAWTC 3 cut(s) 12, 281, 869
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 8 cut(s) 169, 364, 388, 649, 652, 655, 760, 763
PleI GAGTC 2 cut(s) 170, 629
PpsI GAGTC 2 cut(s) 170, 629
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 79, 382
PspPI GGNCC 1 cut(s) 156
PsrI GAACNNNNNNTAC 2 cut(s) 335, 367
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 2 cut(s) 92, 761
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 1 cut(s) 724
SacII CCGCGG 1 cut(s) 657
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 8 cut(s) 168, 363, 387, 648, 651, 654, 759, 762
Sau3AI GATC 2 cut(s) 201, 380
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 2 cut(s) 171, 629
ScrFI CCNGG 2 cut(s) 180, 267
SfaNI GCATC 2 cut(s) 612, 866
SfcI CTRYAG 1 cut(s) 648
Sfr303I CCGCGG 1 cut(s) 657
SfuI TTCGAA 2 cut(s) 111, 867
SgrBI CCGCGG 1 cut(s) 657
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 724
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 3 cut(s) 107, 449, 863
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 178, 265
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 3 cut(s) 190, 347, 622
TaiI ACGT 1 cut(s) 234
TaqI TCGA 5 cut(s) 15, 111, 243, 812, 867
TasI AATT 3 cut(s) 107, 449, 863
TauI GCSGC 3 cut(s) 365, 389, 656
TfiI GAWTC 3 cut(s) 12, 281, 869
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 3 cut(s) 24, 511, 542
TseI GCWGC 5 cut(s) 167, 647, 650, 758, 761
Tsp45I GTSAC 3 cut(s) 24, 511, 542
TspDTI ATGAA 5 cut(s) 17, 273, 356, 550, 765
TspGWI ACGGA 2 cut(s) 327, 685
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 696
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 808
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.