Rmu_sc0000142.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000142.1
OG0012757
Physical Location & Seq
Forward (+)
1 .. 1324
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000142.1_g000001.1.cds

Sequence Viewer

Length: 888 bp
tcaaattggttgtttcaagaaagcaaaggtgccgagtggaccgcagaagagaacaagcgattcgaaaatgctcttgctctgtatgataaggacacccccgatcgatggcacaaggtggcttcttggatccctggaaagaccgtaggcgatgtgatcaagcagtacaaggagttggaagaagatgtcagtgatattgaggctggtcttatcccaattcctgggtattctagtaataattctttcacattggagtgggctgacgatcaaggcttcgatggattgaagcaatattatagtactgttggtggcaagagaggctcgtcgactcggccgtctgagcaagaaagaaagaaaggtgtaccatggactgaagaagagcacaggcaatttctgatgggacttaaaaagtatggtaaaggtgactggagaaatatctctagaaattttgtgacctctcggacacctactcaagtagccagtcatgctcaaaagtattatatcaggcaacttacaggaggcaaagacaagagaaggtctagcatccatgacatcacaaccgttaacctgtcagataccaaatctggatcacaagagagtaatcagagtaatactaaaagtcctccgtctcaagatcatgattctgcagttgcggttcagtcacagcaacatgcaaaggtgagtaataagcagcaatttgactggaaagtgtcgaaggagggaccgcaaatggtcttcaattcaatgaatgggaatgcaatcattggacctttctttgggatttcttcacatgttcctaagattgaggagcaagatttcttcattggcaatacttttcatggatctcagtttgatcatcacaatgtgcgttttgagatgcaatatcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

295

Amino Acids

33.62

Weight (kDa)

6.8

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 218
AccI GTMKAC 1 cut(s) 323
AciI CCGC 3 cut(s) 42, 650, 722
AclWI GGATC 4 cut(s) 121, 134, 592, 847
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 390
AdeI CACNNNGTG 2 cut(s) 115, 862
AfaI GTAC 3 cut(s) 164, 298, 360
AfiI CCNNNNNNNGG 3 cut(s) 105, 218, 773
AflIII ACRYGT 1 cut(s) 787
AgsI TTSAA 4 cut(s) 17, 283, 736, 741
AjnI CCWGG 2 cut(s) 130, 217
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 630
AlwI GGATC 4 cut(s) 121, 134, 592, 847
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 688
ApoI RAATTY 1 cut(s) 442
AspS9I GGNCC 3 cut(s) 39, 719, 764
AsuHPI GGTGA 2 cut(s) 431, 688
AsuII TTCGAA 1 cut(s) 63
AvaII GGWCC 3 cut(s) 39, 719, 764
BamHI GGATCC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 700
BccI CCATC 3 cut(s) 99, 269, 388
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 132, 219
BclI TGATCA 2 cut(s) 153, 850
BcoDI GTCTC 1 cut(s) 630
BfaI CTAG 3 cut(s) 228, 438, 537
BfmI CTRYAG 1 cut(s) 642
BisI GCNGC 1 cut(s) 689
BlsI GCNGC 1 cut(s) 690
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 132, 219
Bme18I GGWCC 3 cut(s) 39, 719, 764
BmgT120I GGNCC 3 cut(s) 39, 719, 764
BmiI GGNNCC 3 cut(s) 31, 128, 720
BmrFI CCNGG 2 cut(s) 132, 219
BmsI GCATC 2 cut(s) 549, 864
BpiI GAAGAC 1 cut(s) 724
BpmI CTGGAG 1 cut(s) 445
Bpu14I TTCGAA 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 453, 612
Bsa29I ATCGAT 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 130, 218, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 218, 773
Bse1I ACTGG 3 cut(s) 428, 477, 704
BseBI CCWGG 2 cut(s) 132, 219
BseCI ATCGAT 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 130, 218, 362
BseGI GGATG 1 cut(s) 540
BseLI CCNNNNNNNGG 3 cut(s) 105, 218, 773
BseMII CTCAG 2 cut(s) 327, 857
BseNI ACTGG 3 cut(s) 428, 477, 704
BseRI GAGGAG 1 cut(s) 818
BseX3I CGGCCG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 700
Bsh1285I CGRYCG 2 cut(s) 103, 332
BshFI GGCC 1 cut(s) 331
BshNI GGYRCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 2 cut(s) 103, 332
BsiHKAI GWGCWC 1 cut(s) 381
BslFI GGGAC 2 cut(s) 411, 732
BslI CCNNNNNNNGG 3 cut(s) 105, 218, 773
BsmAI GTCTC 1 cut(s) 630
BsmBI CGTCTC 1 cut(s) 630
BsmFI GGGAC 2 cut(s) 411, 732
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 3 cut(s) 42, 650, 722
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 328, 856
BspDI ATCGAT 1 cut(s) 103
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 3 cut(s) 31, 128, 720
BspMAI CTGCAG 1 cut(s) 646
BspPI GGATC 4 cut(s) 121, 134, 592, 847
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 29
BsrI ACTGG 3 cut(s) 428, 477, 704
BssECI CCNNGG 3 cut(s) 130, 218, 362
BssMI GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 2 cut(s) 132, 219
Bst4CI ACNGT 3 cut(s) 142, 301, 559
Bst6I CTCTTC 2 cut(s) 42, 369
BstBI TTCGAA 1 cut(s) 63
BstDEI CTNAG 3 cut(s) 336, 795, 843
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 540
BstKTI GATC 8 cut(s) 103, 129, 156, 265, 587, 634, 842, 853
BstMAI GTCTC 1 cut(s) 630
BstMBI GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
BstMCI CGRYCG 2 cut(s) 103, 332
BstMWI GCNNNNNNNGC 3 cut(s) 315, 337, 482
BstNI CCWGG 2 cut(s) 132, 219
BstNSI RCATGY 2 cut(s) 671, 791
BstSCI CCNGG 2 cut(s) 130, 217
BstSFI CTRYAG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 724
BstX2I RGATCY 2 cut(s) 126, 839
BstYI RGATCY 2 cut(s) 126, 839
BstZI CGGCCG 1 cut(s) 329
Bsu15I ATCGAT 1 cut(s) 103
BsuRI GGCC 1 cut(s) 331
BsuTUI ATCGAT 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 362
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 634
Cfr13I GGNCC 3 cut(s) 39, 719, 764
ClaI ATCGAT 1 cut(s) 103
Csp6I GTAC 3 cut(s) 163, 297, 359
CviAII CATG 7 cut(s) 363, 482, 545, 635, 668, 788, 836
CviJI RGCY 7 cut(s) 119, 200, 257, 270, 318, 331, 476
CviKI_1 RGCY 7 cut(s) 119, 200, 257, 270, 318, 331, 476
CviQI GTAC 3 cut(s) 163, 297, 359
DdeI CTNAG 3 cut(s) 336, 795, 843
DpnI GATC 8 cut(s) 102, 128, 155, 264, 586, 633, 841, 852
DpnII GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
DraIII CACNNNGTG 2 cut(s) 115, 862
DrdI GACNNNNNNGTC 1 cut(s) 331
DseDI GACNNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 329
EagI CGGCCG 1 cut(s) 329
Eam1104I CTCTTC 2 cut(s) 42, 369
EarI CTCTTC 2 cut(s) 42, 369
EclXI CGGCCG 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 3 cut(s) 39, 719, 764
Eco52I CGGCCG 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 130, 217
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 7 cut(s) 366, 485, 548, 638, 671, 791, 839
FaqI GGGAC 2 cut(s) 411, 732
FatI CATG 7 cut(s) 362, 481, 544, 634, 667, 787, 835
FbaI TGATCA 2 cut(s) 153, 850
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 689
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 1 cut(s) 689
FspBI CTAG 3 cut(s) 228, 438, 537
GluI GCNGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 1 cut(s) 331
Hin1II CATG 7 cut(s) 366, 485, 548, 638, 671, 791, 839
HincII GTYRAC 2 cut(s) 324, 562
HindII GTYRAC 2 cut(s) 324, 562
HinfI GANTC 3 cut(s) 60, 325, 638
HpaI GTTAAC 1 cut(s) 562
HphI GGTGA 2 cut(s) 431, 688
Hpy166II GTNNAC 4 cut(s) 39, 324, 359, 562
Hpy188I TCNGA 5 cut(s) 337, 393, 459, 571, 603
Hpy188III TCNNGA 5 cut(s) 17, 438, 582, 629, 635
Hpy8I GTNNAC 4 cut(s) 39, 324, 359, 562
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 525, 706
HpyCH4III ACNGT 3 cut(s) 142, 301, 559
HpyCH4V TGCA 4 cut(s) 644, 671, 755, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 337, 482
HpyF3I CTNAG 3 cut(s) 336, 795, 843
Hsp92II CATG 7 cut(s) 366, 485, 548, 638, 671, 791, 839
Ksp22I TGATCA 2 cut(s) 153, 850
KspAI GTTAAC 1 cut(s) 562
Kzo9I GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 805
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 2 cut(s) 549, 864
MaeI CTAG 3 cut(s) 228, 438, 537
MaeIII GTNAC 3 cut(s) 419, 448, 657
MalI GATC 8 cut(s) 102, 128, 155, 264, 586, 633, 841, 852
MboI GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
MboII GAAGA 8 cut(s) 59, 188, 191, 383, 386, 724, 774, 808
MflI RGATCY 2 cut(s) 126, 839
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 7 cut(s) 4, 213, 235, 386, 442, 692, 736
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 7 cut(s) 190, 308, 463, 509, 630, 709, 796
MseI TTAA 2 cut(s) 402, 561
MslI CAYNNNNRTG 2 cut(s) 250, 858
MspR9I CCNGG 2 cut(s) 132, 219
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 2 cut(s) 132, 219
MwoI GCNNNNNNNGC 3 cut(s) 315, 337, 482
NcoI CCATGG 1 cut(s) 362
NdeII GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
NlaIII CATG 7 cut(s) 366, 485, 548, 638, 671, 791, 839
NlaIV GGNNCC 3 cut(s) 31, 128, 720
NmeAIII GCCGAG 2 cut(s) 58, 307
NmuCI GTSAC 3 cut(s) 419, 448, 657
NspI RCATGY 2 cut(s) 671, 791
NspV TTCGAA 1 cut(s) 63
PagI TCATGA 1 cut(s) 634
PciI ACATGT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PctI GAATGC 1 cut(s) 757
PfeI GAWTC 2 cut(s) 60, 638
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 1 cut(s) 690
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PscI ACATGT 1 cut(s) 787
Psp6I CCWGG 2 cut(s) 130, 217
PspGI CCWGG 2 cut(s) 130, 217
PspN4I GGNNCC 3 cut(s) 31, 128, 720
PspPI GGNCC 3 cut(s) 39, 719, 764
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 2 cut(s) 126, 839
PvuI CGATCG 1 cut(s) 103
RsaI GTAC 3 cut(s) 164, 298, 360
RsaNI GTAC 3 cut(s) 163, 297, 359
RseI CAYNNNNRTG 2 cut(s) 250, 858
SalI GTCGAC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 402, 561
SatI GCNGC 1 cut(s) 689
Sau3AI GATC 8 cut(s) 100, 126, 153, 262, 584, 631, 839, 850
Sau96I GGNCC 3 cut(s) 39, 719, 764
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 132, 219
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 2 cut(s) 549, 864
SfcI CTRYAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 3 cut(s) 39, 719, 764
SmiMI CAYNNNNRTG 2 cut(s) 250, 858
SmlI CTYRAG 2 cut(s) 468, 627
SmoI CTYRAG 2 cut(s) 468, 627
Sse9I AATT 7 cut(s) 4, 213, 235, 386, 442, 692, 736
SsiI CCGC 3 cut(s) 42, 650, 722
SspI AATATT 1 cut(s) 290
SspMI CTAG 3 cut(s) 228, 438, 537
StyD4I CCNGG 2 cut(s) 130, 217
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 142, 301, 559
TaqI TCGA 5 cut(s) 63, 103, 273, 323, 710
TasI AATT 7 cut(s) 4, 213, 235, 386, 442, 692, 736
TatI WGTACW 2 cut(s) 162, 296
TfiI GAWTC 2 cut(s) 60, 638
Tru1I TTAA 2 cut(s) 402, 561
Tru9I TTAA 2 cut(s) 402, 561
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 3 cut(s) 419, 448, 657
TseI GCWGC 1 cut(s) 688
Tsp45I GTSAC 3 cut(s) 419, 448, 657
TspDTI ATGAA 3 cut(s) 758, 808, 824
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 1 cut(s) 193
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 3 cut(s) 39, 719, 764
XapI RAATTY 1 cut(s) 442
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 2 cut(s) 671, 791
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 3 cut(s) 228, 438, 537
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.