pycom04g13340
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0012757
Physical Location & Seq
Forward (+)
16304843 .. 16305896
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13340.2

Sequence Viewer

Length: 582 bp
ATGTTCAGAGGAATGGAAATTCCATCTCCAACCTCCTATCTGCAGAACTCCAATTGGTTGTTTGAAGAAAGCACGGGAGCCGAATGGACTGTGGAAGAGAACAAGCTATTCGAAAATGCTCTCGCTTTATACGATAAGGATACACCCGATCGATGGCTCAGGGTGGCGGCTATGATCCCTGGAAAGACTGTTGGAGATGTGATCAAACAGTACAAGGAATTAGAAGAAGATGTTAGTGATATCGAAGCTGGGCTTATCCCAATTCCTGGTTACACTAGTAACAATTTCACAACGGAGTGGGTTAACAATCAGGGCTTTGATGGATTGGAGCAGTTTTACAGTGTTGGTGGAAAGCGAAGCGCCTCGACTAGGCCCGCAGATCAGGAGAGGAAGAAAGGGGTGCCATGGACAGAAGAAGAGCACAGGCAATTTCTGATGGGCCTTAAAAAGTATGGAAAAGGTGACTGGAGAAATATCTCTCGAAATTTTGTGATCACAAGGACGCCCACTCAGGTTGCTAGTCATGCACAAAAATACTTTATCAGGCAACTCACAGGAGGGAAGGACAAGAGAACGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

194

Amino Acids

22.16

Weight (kDa)

6.19

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 266
AciI CCGC 2 cut(s) 167, 375
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 18, 484
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 153, 266, 369
AgsI TTSAA 1 cut(s) 65
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 2 cut(s) 178, 265
AluBI AGCT 2 cut(s) 106, 248
AluI AGCT 2 cut(s) 106, 248
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 169
AoxI GGCC 2 cut(s) 371, 439
ApoI RAATTY 2 cut(s) 18, 484
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 372, 439
AsuHPI GGTGA 1 cut(s) 473
AsuII TTCGAA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 423
BccI CCATC 4 cut(s) 31, 147, 314, 430
BciT130I CCWGG 2 cut(s) 180, 267
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 2 cut(s) 201, 492
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 4 cut(s) 276, 369, 519, 580
BfmI CTRYAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 363
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 180, 267
BmgT120I GGNCC 2 cut(s) 372, 439
BmiI GGNNCC 2 cut(s) 79, 402
BmrFI CCNGG 2 cut(s) 180, 267
BpmI CTGGAG 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 178, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 266, 369
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 2 cut(s) 180, 267
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 178, 404
BseLI CCNNNNNNNGG 3 cut(s) 153, 266, 369
BseMII CTCAG 2 cut(s) 172, 524
BseNI ACTGG 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 373, 441
BshNI GGYRCC 1 cut(s) 400
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 153, 266, 369
BsnI GGCC 2 cut(s) 373, 441
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 6 cut(s) 148, 174, 201, 379, 492, 576
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 2 cut(s) 167, 375
BspANI GGCC 2 cut(s) 373, 441
BspCNI CTCAG 2 cut(s) 171, 523
BspDI ATCGAT 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 79, 402
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 400
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 178, 404
BssMI GATC 6 cut(s) 148, 174, 201, 379, 492, 576
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 180, 267
Bst4CI ACNGT 4 cut(s) 91, 190, 210, 341
Bst6I CTCTTC 2 cut(s) 90, 411
BstACI GRCGYC 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 2 cut(s) 158, 510
BstDSI CCRYGG 1 cut(s) 404
BstENI CCTNNNNNAGG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 6 cut(s) 151, 177, 204, 382, 495, 579
BstMBI GATC 6 cut(s) 148, 174, 201, 379, 492, 576
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 2 cut(s) 180, 267
BstSCI CCNGG 2 cut(s) 178, 265
BstSFI CTRYAG 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 151
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 373, 441
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 404
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 372, 439
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 1 cut(s) 511
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 2 cut(s) 405, 524
CviJI RGCY 9 cut(s) 80, 106, 157, 170, 248, 253, 315, 373, 441
CviKI_1 RGCY 9 cut(s) 80, 106, 157, 170, 248, 253, 315, 373, 441
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 158, 510
DpnI GATC 6 cut(s) 150, 176, 203, 381, 494, 578
DpnII GATC 6 cut(s) 148, 174, 201, 379, 492, 576
Eam1104I CTCTTC 2 cut(s) 90, 411
EarI CTCTTC 2 cut(s) 90, 411
Eco130I CCWWGG 1 cut(s) 404
Eco32I GATATC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 178, 265
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 408, 527
FaiI YATR 5 cut(s) 130, 173, 406, 453, 525
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 2 cut(s) 404, 523
FauI CCCGC 1 cut(s) 382
FbaI TGATCA 2 cut(s) 201, 492
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 4 cut(s) 276, 369, 519, 580
GlaI GCGC 1 cut(s) 361
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 487
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 2 cut(s) 373, 441
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 2 cut(s) 408, 527
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaI GTTAAC 1 cut(s) 304
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 8, 435
Hpy188III TCNNGA 2 cut(s) 383, 480
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 556
HpyCH4III ACNGT 4 cut(s) 91, 190, 210, 341
HpyCH4V TGCA 2 cut(s) 43, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 2 cut(s) 158, 510
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 2 cut(s) 408, 527
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 2 cut(s) 201, 492
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 6 cut(s) 148, 174, 201, 379, 492, 576
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 77, 328
MaeI CTAG 4 cut(s) 276, 369, 519, 580
MaeIII GTNAC 3 cut(s) 269, 278, 461
MalI GATC 6 cut(s) 150, 176, 203, 381, 494, 578
MboI GATC 6 cut(s) 148, 174, 201, 379, 492, 576
MboII GAAGA 7 cut(s) 77, 107, 236, 239, 403, 425, 428
MfeI CAATTG 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 7 cut(s) 18, 52, 218, 261, 283, 428, 484
MmeI TCCRAC 2 cut(s) 53, 172
MnlI CCTC 4 cut(s) 43, 373, 381, 551
MseI TTAA 2 cut(s) 303, 444
MspR9I CCNGG 2 cut(s) 180, 267
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 2 cut(s) 180, 267
MwoI GCNNNNNNNGC 1 cut(s) 524
NcoI CCATGG 1 cut(s) 404
NdeII GATC 6 cut(s) 148, 174, 201, 379, 492, 576
NlaIII CATG 2 cut(s) 408, 527
NlaIV GGNNCC 2 cut(s) 79, 402
NmuCI GTSAC 1 cut(s) 461
NspV TTCGAA 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 169
Ple19I CGATCG 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 178, 265
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 2 cut(s) 178, 265
PspN4I GGNNCC 2 cut(s) 79, 402
PspPI GGNCC 2 cut(s) 372, 439
PstI CTGCAG 1 cut(s) 45
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 303, 444
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 6 cut(s) 148, 174, 201, 379, 492, 576
Sau96I GGNCC 2 cut(s) 372, 439
ScrFI CCNGG 2 cut(s) 180, 267
SduI GDGCHC 1 cut(s) 423
SetI ASST 5 cut(s) 35, 108, 250, 463, 516
SfcI CTRYAG 1 cut(s) 41
SfuI TTCGAA 1 cut(s) 111
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 7 cut(s) 18, 52, 218, 261, 283, 428, 484
SsiI CCGC 2 cut(s) 167, 375
SspMI CTAG 4 cut(s) 276, 369, 519, 580
StyD4I CCNGG 2 cut(s) 178, 265
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 4 cut(s) 91, 190, 210, 341
TaqI TCGA 5 cut(s) 111, 151, 243, 365, 481
TasI AATT 7 cut(s) 18, 52, 218, 261, 283, 428, 484
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 303, 444
Tru9I TTAA 2 cut(s) 303, 444
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 461
Tsp45I GTSAC 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 346
Van91I CCANNNNNTGG 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 367
XapI RAATTY 2 cut(s) 18, 484
XspI CTAG 4 cut(s) 276, 369, 519, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.