Prupe.6G271600_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012757
Physical Location & Seq
Forward (+)
25735608 .. 25738123
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G271600.1

Sequence Viewer

Length: 921 bp
ATGTACAGAGGAATTGGAATTCTATCTCCAACCTCGTATCTTGAGAACTCAAATTGGTTGTTTCAAGAGAGCAATGGAACCGAGTGGACTGCAGAAGAGAACAAGCAATTTGAAAATGCTCTTGCTCTTTATGATAAGGATACTCCTGATCGATGGTTCAAGGTGGCAGCCAGGATCCCTGGAAAGACTGTAGGCGACGTGATCAAACAGTACAAGGAATTGGAAGAGGATGTTAGTGATATTGAAGCTGGGCTTATCCCAATCCCTGGTTACACCAGTAACTCTTTCACATTGGAGTGGGTTAACAATCAAGGCTTTGATGGGTTGAAACAATTTTACGGTGTTGGTGGAAAGAGAGGCACCTCGACCCGGCCTGCTGATCAGGAAAGGAAGAAAGGGGTGCCATGGACAGAAGAAGAACACAGGCAGTTTCTGATGGGTCTTAAAAAGTATGGTAAAGGTGACTGGAGAAACATCTCTCGCAATTTTGTGACCACAAGGACGCCTACTCAGGTAGCCAGTCATGCTCAAAAATACTTTATCAGGCAACTTACAGGAGGAAAGGACAAGAGAAGATCCAGCATCCATGATATCACAACCGTCAATCTCCAAGATAACAAACCTCCCTCACCAGACAGCAAAAGCCCTCCATCATCAGACCATTCTTCCACAGTGGTGCAGTCACAGCAGCATCAAAAGGTGACTGGCATGAGTGAACAACAATTTGACTGGAAATCGCCGAATGAGGGGCAGCCTATGGTTTTCAATTCAGCAAATGGGAGCACCATGGGACCATTTTGTGGGATTTCTTCATATGTACCTAAGCTTGAGGAGCAAAATTTTCTCAGTGGCAATCTTCATGGATCTCAATTGGGGCATTACAATGCCCGTTTTCAGATGCAATCGATGCGATACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

307

Amino Acids

34.66

Weight (kDa)

8.43

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 359, 400
AccB7I CCANNNNNTGG 2 cut(s) 266, 800
AclWI GGATC 4 cut(s) 169, 182, 570, 871
AcsI RAATTY 2 cut(s) 18, 838
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 3 cut(s) 5, 212, 819
AfiI CCNNNNNNNGG 4 cut(s) 266, 369, 746, 800
AgsI TTSAA 6 cut(s) 65, 113, 160, 245, 328, 766
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 3 cut(s) 170, 178, 265
AleI CACNNNNGTG 1 cut(s) 674
AluBI AGCT 2 cut(s) 248, 826
AluI AGCT 2 cut(s) 248, 826
Alw21I GWGCWC 1 cut(s) 785
AlwI GGATC 4 cut(s) 169, 182, 570, 871
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 3 cut(s) 167, 688, 751
ApoI RAATTY 2 cut(s) 18, 838
AspS9I GGNCC 1 cut(s) 791
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 3 cut(s) 473, 621, 712
AvaII GGWCC 1 cut(s) 791
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 2 cut(s) 359, 400
Bbv12I GWGCWC 1 cut(s) 785
BbvI GCAGC 3 cut(s) 179, 700, 763
BccI CCATC 4 cut(s) 147, 314, 430, 658
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 3 cut(s) 172, 180, 267
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 2 cut(s) 201, 379
BcnI CCSGG 1 cut(s) 370
BfmI CTRYAG 2 cut(s) 90, 189
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 3 cut(s) 168, 689, 752
BlsI GCNGC 3 cut(s) 169, 690, 753
Bme1390I CCNGG 4 cut(s) 172, 180, 267, 370
Bme18I GGWCC 1 cut(s) 791
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 5 cut(s) 79, 176, 361, 402, 792
BmrFI CCNGG 4 cut(s) 172, 180, 267, 370
BmsI GCATC 4 cut(s) 591, 700, 888, 897
BpmI CTGGAG 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 822
BpuEI CTTGAG 2 cut(s) 62, 848
BpuMI CCSGG 1 cut(s) 370
Bsa29I ATCGAT 2 cut(s) 151, 905
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 4 cut(s) 178, 265, 404, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 369, 746, 800
Bse1I ACTGG 6 cut(s) 276, 470, 519, 709, 734, 916
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 3 cut(s) 172, 180, 267
BseCI ATCGAT 2 cut(s) 151, 905
BseDI CCNNGG 4 cut(s) 178, 265, 404, 786
BseGI GGATG 2 cut(s) 235, 582
BseLI CCNNNNNNNGG 4 cut(s) 266, 369, 746, 800
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 524, 859
BseNI ACTGG 6 cut(s) 276, 470, 519, 709, 734, 916
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 3 cut(s) 179, 700, 763
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 698
BshFI GGCC 1 cut(s) 373
BshNI GGYRCC 2 cut(s) 359, 400
BshVI ATCGAT 2 cut(s) 151, 905
BsiHKAI GWGCWC 1 cut(s) 785
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 4 cut(s) 266, 369, 746, 800
BsmFI GGGAC 1 cut(s) 804
BsnI GGCC 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 785
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 148, 174, 201, 379, 575, 863
Bsp19I CCATGG 2 cut(s) 404, 786
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 2 cut(s) 523, 858
BspDI ATCGAT 2 cut(s) 151, 905
BspLI GGNNCC 5 cut(s) 79, 176, 361, 402, 792
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 4 cut(s) 169, 182, 570, 871
BspT107I GGYRCC 2 cut(s) 359, 400
BsrDI GCAATG 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 6 cut(s) 276, 470, 519, 709, 734, 916
BssECI CCNNGG 4 cut(s) 178, 265, 404, 786
BssMI GATC 6 cut(s) 148, 174, 201, 379, 575, 863
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 2 cut(s) 404, 786
Bst2UI CCWGG 3 cut(s) 172, 180, 267
Bst4CI ACNGT 5 cut(s) 190, 210, 341, 601, 673
Bst6I CTCTTC 2 cut(s) 90, 219
BstACI GRCGYC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 907
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 510, 822, 845
BstDSI CCRYGG 2 cut(s) 404, 786
BstF5I GGATG 2 cut(s) 235, 582
BstKTI GATC 6 cut(s) 151, 177, 204, 382, 578, 866
BstMBI GATC 6 cut(s) 148, 174, 201, 379, 575, 863
BstMWI GCNNNNNNNGC 4 cut(s) 524, 685, 832, 907
BstNI CCWGG 3 cut(s) 172, 180, 267
BstSCI CCNGG 4 cut(s) 170, 178, 265, 368
BstSFI CTRYAG 2 cut(s) 90, 189
BstV1I GCAGC 3 cut(s) 179, 700, 763
BstX2I RGATCY 3 cut(s) 174, 575, 863
BstYI RGATCY 3 cut(s) 174, 575, 863
Bsu15I ATCGAT 2 cut(s) 151, 905
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 373
BsuTUI ATCGAT 2 cut(s) 151, 905
BtgI CCRYGG 2 cut(s) 404, 786
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 235, 582
BtsIMutI CAGTG 2 cut(s) 678, 853
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 791
ClaI ATCGAT 2 cut(s) 151, 905
CseI GACGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 4, 211, 818
CviAII CATG 6 cut(s) 405, 524, 587, 709, 787, 860
CviJI RGCY 9 cut(s) 170, 248, 253, 315, 373, 518, 645, 754, 826
CviKI_1 RGCY 9 cut(s) 170, 248, 253, 315, 373, 518, 645, 754, 826
CviQI GTAC 3 cut(s) 4, 211, 818
DdeI CTNAG 3 cut(s) 510, 822, 845
DpnI GATC 6 cut(s) 150, 176, 203, 381, 577, 865
DpnII GATC 6 cut(s) 148, 174, 201, 379, 575, 863
Eam1104I CTCTTC 2 cut(s) 90, 219
EarI CTCTTC 2 cut(s) 90, 219
Eco130I CCWWGG 2 cut(s) 404, 786
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 170, 178, 265
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 404, 786
ErhI CCWWGG 2 cut(s) 404, 786
FaeI CATG 6 cut(s) 408, 527, 590, 712, 790, 863
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 1 cut(s) 804
FatI CATG 6 cut(s) 404, 523, 586, 708, 786, 859
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 2 cut(s) 201, 379
Fnu4HI GCNGC 3 cut(s) 168, 689, 752
FokI GGATG 2 cut(s) 242, 569
Fsp4HI GCNGC 3 cut(s) 168, 689, 752
GluI GCNGC 3 cut(s) 168, 689, 752
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 6 cut(s) 408, 527, 590, 712, 790, 863
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 824
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 370
HphI GGTGA 3 cut(s) 473, 621, 712
Hpy166II GTNNAC 3 cut(s) 87, 304, 716
Hpy188I TCNGA 3 cut(s) 435, 658, 897
Hpy188III TCNNGA 4 cut(s) 41, 65, 146, 383
Hpy8I GTNNAC 3 cut(s) 87, 304, 716
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 5 cut(s) 190, 210, 341, 601, 673
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 92, 679, 901
HpyF10VI GCNNNNNNNGC 4 cut(s) 524, 685, 832, 907
HpyF3I CTNAG 3 cut(s) 510, 822, 845
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 6 cut(s) 408, 527, 590, 712, 790, 863
Ksp22I TGATCA 2 cut(s) 201, 379
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 6 cut(s) 148, 174, 201, 379, 575, 863
LmnI GCTCC 2 cut(s) 780, 832
Lsp1109I GCAGC 3 cut(s) 179, 700, 763
LweI GCATC 4 cut(s) 591, 700, 888, 897
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 6 cut(s) 269, 278, 461, 490, 681, 700
MalI GATC 6 cut(s) 150, 176, 203, 381, 577, 865
MboI GATC 6 cut(s) 148, 174, 201, 379, 575, 863
MboII GAAGA 9 cut(s) 107, 236, 403, 425, 428, 585, 657, 801, 848
MfeI CAATTG 1 cut(s) 869
MflI RGATCY 3 cut(s) 174, 575, 863
MhlI GDGCHC 1 cut(s) 785
MmeI TCCRAC 1 cut(s) 53
MseI TTAA 2 cut(s) 303, 444
MslI CAYNNNNRTG 3 cut(s) 295, 674, 882
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 4 cut(s) 172, 180, 267, 370
MunI CAATTG 1 cut(s) 869
MvaI CCWGG 3 cut(s) 172, 180, 267
MwoI GCNNNNNNNGC 4 cut(s) 524, 685, 832, 907
NciI CCSGG 1 cut(s) 370
NcoI CCATGG 2 cut(s) 404, 786
NdeI CATATG 1 cut(s) 814
NdeII GATC 6 cut(s) 148, 174, 201, 379, 575, 863
NlaIII CATG 6 cut(s) 408, 527, 590, 712, 790, 863
NlaIV GGNNCC 5 cut(s) 79, 176, 361, 402, 792
NmuCI GTSAC 4 cut(s) 461, 490, 681, 700
OliI CACNNNNGTG 1 cut(s) 674
PflMI CCANNNNNTGG 2 cut(s) 266, 800
PkrI GCNGC 3 cut(s) 169, 690, 753
Psp6I CCWGG 3 cut(s) 170, 178, 265
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 3 cut(s) 170, 178, 265
PspN4I GGNNCC 5 cut(s) 79, 176, 361, 402, 792
PspPI GGNCC 1 cut(s) 791
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 3 cut(s) 174, 575, 863
RsaI GTAC 3 cut(s) 5, 212, 819
RsaNI GTAC 3 cut(s) 4, 211, 818
RseI CAYNNNNRTG 3 cut(s) 295, 674, 882
SaqAI TTAA 2 cut(s) 303, 444
SatI GCNGC 3 cut(s) 168, 689, 752
Sau3AI GATC 6 cut(s) 148, 174, 201, 379, 575, 863
Sau96I GGNCC 1 cut(s) 791
ScrFI CCNGG 4 cut(s) 172, 180, 267, 370
SduI GDGCHC 1 cut(s) 785
SfaNI GCATC 4 cut(s) 591, 700, 888, 897
SfcI CTRYAG 2 cut(s) 90, 189
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 3 cut(s) 295, 674, 882
SmlI CTYRAG 2 cut(s) 41, 827
SmoI CTYRAG 2 cut(s) 41, 827
StyD4I CCNGG 4 cut(s) 170, 178, 265, 368
StyI CCWWGG 2 cut(s) 404, 786
TaaI ACNGT 5 cut(s) 190, 210, 341, 601, 673
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 151, 365, 905
TatI WGTACW 2 cut(s) 3, 210
Tru1I TTAA 2 cut(s) 303, 444
Tru9I TTAA 2 cut(s) 303, 444
TscAI CASTG 2 cut(s) 678, 853
TseFI GTSAC 4 cut(s) 461, 490, 681, 700
TseI GCWGC 3 cut(s) 167, 688, 751
Tsp45I GTSAC 4 cut(s) 461, 490, 681, 700
TspDTI ATGAA 2 cut(s) 801, 848
TspRI CASTG 2 cut(s) 678, 853
Van91I CCANNNNNTGG 2 cut(s) 266, 800
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 2 cut(s) 18, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.