FvH4_6g11950
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012757
Physical Location & Seq
Reverse (-)
7163445 .. 7166012
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11950.t1

Sequence Viewer

Length: 942 bp
ATGTATAGGGGAATTGAAGTTCTATCTCCAGCCTCTTATATTCAAAACTCAAATTGGTTATTCCAAGAAAGCAAAGGAGCCGAGTGGACCGCAGAGGAGAACAAGCGATTTGAGAATGCTCTTGCTCTTTATGATAAGGACACCCCTGATCGATGGCAAAAGGTGGCTTATTTGATCCCTGGAAAGACCGTTGGCGATGTGATCAAGCAGTACAAGGAGTTGGAGGAAGATGTGAGTGATATTGAGGCTGGTCTTATCCCAATTCCTGGGTATTCTAATAATAATTCTTTCACATTGGAGTGGGTTGATGATCAAGGCTTCGATGGATTGAAGCAATATTATAGTGTTGGTGGGAATGGTGGCAAGAGAGGCTCGTCGACTCGGCCGTCTGAGCAGGAAAGAAAGAAAGGTGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGATGGGACTTAAAAAGTATGGTAAAGGTGACTGGAGAAATATCTCAAGAAATTTTGTGACCACTAGGACACCAACTCAAGTAGCCAGTCATGCTCAAAAGTACTATATCAGGCAACTCACAGGAGGCAAAGACAAGAGAAGGTCTAGCATCCACGACATCACAACCGTTAATGTGTCAGATACCAAATCTGGATCAGTAGGGAGTAGCCAGAGTACTACTAGAAGCTCAACGTCACAAGATCATGAGTCTGCAGTTGTGGTTCAGTCACAGCAACATCCAAAGATGAGTAATAAGCAGCAATTTGACTGGAAAGTGTCGAATGAGGGACCGCAGATGGTCTTCAATTCGATGAATGGGAATGCGATCATTGGACCTTTCATCGGCATTTCTTCACCTGTACCTAAGCTTGAGGAGCAAGATTTCTTCAGTGGCAGTACCTTTCATGGATCTCAGTTTGATCATCACAATGCGCGTTTCGAGATGCAATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.43

Weight (kDa)

6.73

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 72 3.2e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 76 2.7e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 138 - 183 1.4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 1 cut(s) 377
AccII CGCG 1 cut(s) 919
AciI CCGC 2 cut(s) 90, 776
AclWI GGATC 3 cut(s) 169, 646, 901
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 2 cut(s) 444, 856
AfaI GTAC 5 cut(s) 212, 548, 661, 846, 883
AfiI CCNNNNNNNGG 2 cut(s) 266, 827
AgsI TTSAA 4 cut(s) 17, 44, 331, 790
AjnI CCWGG 2 cut(s) 178, 265
AloI GAACNNNNNNTCC 1 cut(s) 35
AluBI AGCT 2 cut(s) 672, 853
AluI AGCT 2 cut(s) 672, 853
Alw21I GWGCWC 1 cut(s) 435
AlwI GGATC 3 cut(s) 169, 646, 901
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 1 cut(s) 496
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 3 cut(s) 87, 773, 818
AsuHPI GGTGA 2 cut(s) 485, 831
AvaII GGWCC 3 cut(s) 87, 773, 818
BbsI GAAGAC 1 cut(s) 778
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 754
BccI CCATC 4 cut(s) 147, 317, 442, 775
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 2 cut(s) 180, 267
BclI TGATCA 3 cut(s) 201, 310, 904
BfaI CTAG 3 cut(s) 510, 591, 666
BfmI CTRYAG 1 cut(s) 696
BisI GCNGC 1 cut(s) 743
BlsI GCNGC 1 cut(s) 744
BmcAI AGTACT 2 cut(s) 548, 661
Bme1390I CCNGG 2 cut(s) 180, 267
Bme18I GGWCC 3 cut(s) 87, 773, 818
BmgT120I GGNCC 3 cut(s) 87, 773, 818
BmiI GGNNCC 2 cut(s) 79, 774
BmrFI CCNGG 2 cut(s) 180, 267
BmsI GCATC 2 cut(s) 603, 918
BpiI GAAGAC 1 cut(s) 778
BpmI CTGGAG 2 cut(s) 12, 499
Bpu10I CCTNAGC 1 cut(s) 849
BpuEI CTTGAG 3 cut(s) 475, 507, 875
Bsa29I ATCGAT 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 178, 266, 416
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 827
Bse1I ACTGG 3 cut(s) 482, 531, 758
BseBI CCWGG 2 cut(s) 180, 267
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 178, 266, 416
BseGI GGATG 2 cut(s) 594, 721
BseLI CCNNNNNNNGG 2 cut(s) 266, 827
BseMII CTCAG 2 cut(s) 381, 911
BseNI ACTGG 3 cut(s) 482, 531, 758
BseRI GAGGAG 2 cut(s) 110, 872
BseX3I CGGCCG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 754
Bsh1236I CGCG 1 cut(s) 919
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 385
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 435
BslFI GGGAC 2 cut(s) 465, 786
BslI CCNNNNNNNGG 2 cut(s) 266, 827
BsmFI GGGAC 2 cut(s) 465, 786
BsmI GAATGC 2 cut(s) 121, 811
BsnI GGCC 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
Bsp19I CCATGG 1 cut(s) 416
BspACI CCGC 2 cut(s) 90, 776
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 2 cut(s) 382, 910
BspDI ATCGAT 1 cut(s) 151
BspFNI CGCG 1 cut(s) 919
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 79, 774
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 3 cut(s) 169, 646, 901
BspQI GCTCTTC 1 cut(s) 423
BsrI ACTGG 3 cut(s) 482, 531, 758
BssECI CCNNGG 3 cut(s) 178, 266, 416
BssMI GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 180, 267
Bst4CI ACNGT 2 cut(s) 190, 613
Bst6I CTCTTC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 390, 849, 897
BstDSI CCRYGG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 594, 721
BstFNI CGCG 1 cut(s) 919
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 9 cut(s) 151, 177, 204, 313, 641, 688, 813, 896, 907
BstMBI GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 4 cut(s) 369, 391, 536, 859
BstNI CCWGG 2 cut(s) 180, 267
BstSCI CCNGG 2 cut(s) 178, 265
BstSFI CTRYAG 1 cut(s) 696
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 1 cut(s) 754
BstV2I GAAGAC 1 cut(s) 778
BstX2I RGATCY 1 cut(s) 893
BstYI RGATCY 1 cut(s) 893
BstZI CGGCCG 1 cut(s) 383
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 1 cut(s) 385
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 416
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 594, 721
BtsIMutI CAGTG 1 cut(s) 880
CciI TCATGA 1 cut(s) 688
CfoI GCGC 1 cut(s) 919
Cfr13I GGNCC 3 cut(s) 87, 773, 818
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 5 cut(s) 211, 547, 660, 845, 882
CviAII CATG 4 cut(s) 417, 536, 689, 890
CviQI GTAC 5 cut(s) 211, 547, 660, 845, 882
DdeI CTNAG 3 cut(s) 390, 849, 897
DpnI GATC 9 cut(s) 150, 176, 203, 312, 640, 687, 812, 895, 906
DpnII GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 383
EagI CGGCCG 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EclXI CGGCCG 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 416
Eco47I GGWCC 3 cut(s) 87, 773, 818
Eco52I CGGCCG 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 444, 856
EcoRII CCWGG 2 cut(s) 178, 265
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 4 cut(s) 420, 539, 692, 893
FaqI GGGAC 2 cut(s) 465, 786
FatI CATG 4 cut(s) 416, 535, 688, 889
FbaI TGATCA 3 cut(s) 201, 310, 904
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 743
FokI GGATG 2 cut(s) 581, 708
Fsp4HI GCNGC 1 cut(s) 743
FspBI CTAG 3 cut(s) 510, 591, 666
GlaI GCGC 1 cut(s) 918
GluI GCNGC 1 cut(s) 743
GsuI CTGGAG 2 cut(s) 12, 499
HaeIII GGCC 1 cut(s) 385
HhaI GCGC 1 cut(s) 919
Hin1II CATG 4 cut(s) 420, 539, 692, 893
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 2 cut(s) 379, 692
HphI GGTGA 2 cut(s) 485, 831
Hpy166II GTNNAC 2 cut(s) 87, 378
Hpy188I TCNGA 3 cut(s) 391, 447, 625
Hpy188III TCNNGA 4 cut(s) 492, 636, 689, 925
Hpy8I GTNNAC 2 cut(s) 87, 378
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 579
HpyCH4III ACNGT 2 cut(s) 190, 613
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 2 cut(s) 698, 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 391, 536, 859
HpyF3I CTNAG 3 cut(s) 390, 849, 897
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 4 cut(s) 420, 539, 692, 893
HspAI GCGC 1 cut(s) 917
Ksp22I TGATCA 3 cut(s) 201, 310, 904
Kzo9I GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 77, 859
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 2 cut(s) 603, 918
MaeI CTAG 3 cut(s) 510, 591, 666
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 4 cut(s) 473, 502, 678, 711
MalI GATC 9 cut(s) 150, 176, 203, 312, 640, 687, 812, 895, 906
MboI GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
MboII GAAGA 6 cut(s) 239, 437, 440, 778, 828, 862
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 8 cut(s) 12, 52, 261, 283, 440, 496, 746, 790
MlyI GAGTC 2 cut(s) 373, 701
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 8 cut(s) 43, 88, 217, 238, 362, 563, 763, 850
MseI TTAA 2 cut(s) 456, 615
MslI CAYNNNNRTG 2 cut(s) 298, 912
MspR9I CCNGG 2 cut(s) 180, 267
Mva1269I GAATGC 2 cut(s) 121, 811
MvaI CCWGG 2 cut(s) 180, 267
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 4 cut(s) 369, 391, 536, 859
NcoI CCATGG 1 cut(s) 416
NdeII GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
NlaIII CATG 4 cut(s) 420, 539, 692, 893
NlaIV GGNNCC 2 cut(s) 79, 774
NmeAIII GCCGAG 2 cut(s) 106, 361
NmuCI GTSAC 4 cut(s) 473, 502, 678, 711
PagI TCATGA 1 cut(s) 688
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PctI GAATGC 2 cut(s) 121, 811
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 744
PleI GAGTC 2 cut(s) 373, 700
PpsI GAGTC 2 cut(s) 373, 700
Psp6I CCWGG 2 cut(s) 178, 265
PspGI CCWGG 2 cut(s) 178, 265
PspN4I GGNNCC 2 cut(s) 79, 774
PspPI GGNCC 3 cut(s) 87, 773, 818
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 893
RsaI GTAC 5 cut(s) 212, 548, 661, 846, 883
RsaNI GTAC 5 cut(s) 211, 547, 660, 845, 882
RseI CAYNNNNRTG 2 cut(s) 298, 912
SalI GTCGAC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 456, 615
SatI GCNGC 1 cut(s) 743
Sau3AI GATC 9 cut(s) 148, 174, 201, 310, 638, 685, 810, 893, 904
Sau96I GGNCC 3 cut(s) 87, 773, 818
ScaI AGTACT 2 cut(s) 548, 661
SchI GAGTC 2 cut(s) 373, 701
ScrFI CCNGG 2 cut(s) 180, 267
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 2 cut(s) 603, 918
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 3 cut(s) 87, 773, 818
SmiMI CAYNNNNRTG 2 cut(s) 298, 912
SmlI CTYRAG 3 cut(s) 490, 522, 854
SmoI CTYRAG 3 cut(s) 490, 522, 854
Sse9I AATT 8 cut(s) 12, 52, 261, 283, 440, 496, 746, 790
SsiI CCGC 2 cut(s) 90, 776
SspI AATATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 510, 591, 666
StyD4I CCNGG 2 cut(s) 178, 265
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 2 cut(s) 190, 613
TaiI ACGT 1 cut(s) 680
TaqI TCGA 6 cut(s) 151, 321, 377, 764, 794, 924
TasI AATT 8 cut(s) 12, 52, 261, 283, 440, 496, 746, 790
TatI WGTACW 3 cut(s) 210, 546, 659
Tru1I TTAA 2 cut(s) 456, 615
Tru9I TTAA 2 cut(s) 456, 615
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 4 cut(s) 473, 502, 678, 711
TseI GCWGC 1 cut(s) 742
Tsp45I GTSAC 4 cut(s) 473, 502, 678, 711
TspDTI ATGAA 3 cut(s) 812, 814, 878
TspRI CASTG 1 cut(s) 880
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 87, 773, 818
XapI RAATTY 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 3 cut(s) 510, 591, 666
ZrmI AGTACT 2 cut(s) 548, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.