Rroxscaffold_6G00416330
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012757
Physical Location & Seq
Forward (+)
38340791 .. 38343122
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416330.1

Sequence Viewer

Length: 933 bp
ATGTATAGGGGAATTGAAGTTCTATCTCCAGCCTCCTATCTCCAAACCTCAAATTGGTTGTTTCAAGAAAGCAAAGGTGCCGAGTGGACCGCAGAAGAGAACAAGCGATTCGAAAATGCTCTTGCCCTGTACGATAAGGACACCCCCGATCGATGGCACAAGGTGGCTTCTTGGATCCCTGGAAAGACCGTAGGCGATGTGATCAAGCAGTACAAGGAGTTGGAAGAAGATGTGAGTGATATTGAGGCTGGTCTTATCCCAATTCCTGGGTATTCTAGTAATAATTCTTTCACATTGGAGTGGGCTGACGATCAATGCTTCGATGGATTGAAGCAATATTATAGTGTTGGTGGCAAGAGAGGCTCGTCGACTCGGCCGTCTGAGCAAGAAAGAAAGAAAGGTGTACCATGGACTGAAGAAGAGCACAGGCAATTTCTGATGGGACTTAAAAAGTATGGTAAAGGTGACTGGAGAAATATCTCTAGAAATTTTGTGACCTCTCGGACACCTACTCAAGTAGCTAGTCATGCTCAAAAGTACTATATCAGGCAACTTACAGGAGGCAAAGACAAGAGAAGGTCTAGCATCCATGACATCACAACCGTTAATCTGTCAGATACCAAATCTGGATCACAAGAGAGTAATCAGAGTAATACTAAAAGTCCTCCGTCTCAAGATCATGATTCTGCAGTTGCGGTTCAGTCACAGCAACATGCAAAGGTGAGTAATAAGCAGCAATTTGACTGGAAAGTGTCGAATGAGGGACCGCAAATGGTCTTCAATTCAATGAATGGGAATGCGATCATTGGACCTTTCTTTGGGATTTCTTCACATGTTCCTAAGCTTGAGGAGCAAGATTTCTTCATTGGCAATACTTTTCATGGATCTCAGTTTGATCATCACAATGTGCGTTTTGAGATGCAATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

310

Amino Acids

35.36

Weight (kDa)

6.56

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 72 8e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 76 3.8e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 135 - 180 1.8e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 1 cut(s) 368
AciI CCGC 3 cut(s) 90, 695, 767
AclWI GGATC 4 cut(s) 169, 182, 637, 892
AcoI YGGCCR 1 cut(s) 374
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 435
AdeI CACNNNGTG 2 cut(s) 163, 907
AfaI GTAC 4 cut(s) 131, 212, 405, 539
AfiI CCNNNNNNNGG 4 cut(s) 54, 153, 266, 818
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 5 cut(s) 17, 65, 331, 781, 786
AjnI CCWGG 2 cut(s) 178, 265
AloI GAACNNNNNNTCC 1 cut(s) 35
AluBI AGCT 2 cut(s) 521, 844
AluI AGCT 2 cut(s) 521, 844
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 4 cut(s) 169, 182, 637, 892
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 733
ApoI RAATTY 1 cut(s) 487
AspS9I GGNCC 3 cut(s) 87, 764, 809
AsuHPI GGTGA 2 cut(s) 476, 733
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 3 cut(s) 87, 764, 809
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 745
BccI CCATC 3 cut(s) 147, 317, 433
BceAI ACGGC 1 cut(s) 361
BciT130I CCWGG 2 cut(s) 180, 267
BclI TGATCA 2 cut(s) 201, 895
BcoDI GTCTC 1 cut(s) 675
BfaI CTAG 4 cut(s) 276, 483, 522, 582
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 1 cut(s) 734
BlsI GCNGC 1 cut(s) 735
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 2 cut(s) 180, 267
Bme18I GGWCC 3 cut(s) 87, 764, 809
BmgT120I GGNCC 3 cut(s) 87, 764, 809
BmiI GGNNCC 3 cut(s) 79, 176, 765
BmrFI CCNGG 2 cut(s) 180, 267
BmsI GCATC 2 cut(s) 594, 909
BpiI GAAGAC 1 cut(s) 769
BpmI CTGGAG 2 cut(s) 12, 490
Bpu10I CCTNAGC 1 cut(s) 840
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 3 cut(s) 498, 657, 866
Bsa29I ATCGAT 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 178, 266, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 153, 266, 818
Bse1I ACTGG 2 cut(s) 473, 749
BseBI CCWGG 2 cut(s) 180, 267
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 178, 266, 407
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 4 cut(s) 54, 153, 266, 818
BseMII CTCAG 2 cut(s) 372, 902
BseNI ACTGG 2 cut(s) 473, 749
BseRI GAGGAG 1 cut(s) 863
BseX3I CGGCCG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 745
Bsh1285I CGRYCG 2 cut(s) 151, 377
BshFI GGCC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 2 cut(s) 151, 377
BsiHKAI GWGCWC 1 cut(s) 426
BslFI GGGAC 2 cut(s) 456, 777
BslI CCNNNNNNNGG 4 cut(s) 54, 153, 266, 818
BsmAI GTCTC 1 cut(s) 675
BsmBI CGTCTC 1 cut(s) 675
BsmFI GGGAC 2 cut(s) 456, 777
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 3 cut(s) 90, 695, 767
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 2 cut(s) 373, 901
BspDI ATCGAT 1 cut(s) 151
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 3 cut(s) 79, 176, 765
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 4 cut(s) 169, 182, 637, 892
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 473, 749
BssECI CCNNGG 3 cut(s) 178, 266, 407
BssMI GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 2 cut(s) 180, 267
Bst4CI ACNGT 2 cut(s) 190, 604
Bst6I CTCTTC 2 cut(s) 90, 414
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 381, 840, 888
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 1 cut(s) 585
BstKTI GATC 9 cut(s) 151, 177, 204, 313, 632, 679, 804, 887, 898
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
BstMCI CGRYCG 2 cut(s) 151, 377
BstMWI GCNNNNNNNGC 4 cut(s) 360, 382, 527, 850
BstNI CCWGG 2 cut(s) 180, 267
BstNSI RCATGY 2 cut(s) 716, 836
BstSCI CCNGG 2 cut(s) 178, 265
BstSFI CTRYAG 1 cut(s) 687
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 1 cut(s) 769
BstX2I RGATCY 2 cut(s) 174, 884
BstYI RGATCY 2 cut(s) 174, 884
BstZI CGGCCG 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 585
CciI TCATGA 1 cut(s) 679
Cfr13I GGNCC 3 cut(s) 87, 764, 809
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 4 cut(s) 130, 211, 404, 538
CviAII CATG 7 cut(s) 408, 527, 590, 680, 713, 833, 881
CviJI RGCY 8 cut(s) 32, 167, 248, 305, 363, 376, 521, 844
CviKI_1 RGCY 8 cut(s) 32, 167, 248, 305, 363, 376, 521, 844
CviQI GTAC 4 cut(s) 130, 211, 404, 538
DdeI CTNAG 3 cut(s) 381, 840, 888
DpnI GATC 9 cut(s) 150, 176, 203, 312, 631, 678, 803, 886, 897
DpnII GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
DraIII CACNNNGTG 2 cut(s) 163, 907
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 374
EagI CGGCCG 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 90, 414
EarI CTCTTC 2 cut(s) 90, 414
EclXI CGGCCG 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 407
Eco47I GGWCC 3 cut(s) 87, 764, 809
Eco52I CGGCCG 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 178, 265
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
Esp3I CGTCTC 1 cut(s) 675
FaeI CATG 7 cut(s) 411, 530, 593, 683, 716, 836, 884
FaqI GGGAC 2 cut(s) 456, 777
FatI CATG 7 cut(s) 407, 526, 589, 679, 712, 832, 880
FbaI TGATCA 2 cut(s) 201, 895
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 734
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 1 cut(s) 734
FspBI CTAG 4 cut(s) 276, 483, 522, 582
GluI GCNGC 1 cut(s) 734
GsuI CTGGAG 2 cut(s) 12, 490
HaeIII GGCC 1 cut(s) 376
Hin1II CATG 7 cut(s) 411, 530, 593, 683, 716, 836, 884
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 3 cut(s) 108, 370, 683
HphI GGTGA 2 cut(s) 476, 733
Hpy166II GTNNAC 3 cut(s) 87, 369, 404
Hpy188I TCNGA 5 cut(s) 382, 438, 504, 616, 648
Hpy188III TCNNGA 5 cut(s) 65, 483, 627, 674, 680
Hpy8I GTNNAC 3 cut(s) 87, 369, 404
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 2 cut(s) 190, 604
HpyCH4V TGCA 3 cut(s) 689, 716, 922
HpyF10VI GCNNNNNNNGC 4 cut(s) 360, 382, 527, 850
HpyF3I CTNAG 3 cut(s) 381, 840, 888
Hsp92II CATG 7 cut(s) 411, 530, 593, 683, 716, 836, 884
Ksp22I TGATCA 2 cut(s) 201, 895
Kzo9I GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 850
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 2 cut(s) 594, 909
MaeI CTAG 4 cut(s) 276, 483, 522, 582
MaeIII GTNAC 3 cut(s) 464, 493, 702
MalI GATC 9 cut(s) 150, 176, 203, 312, 631, 678, 803, 886, 897
MboI GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
MboII GAAGA 8 cut(s) 107, 236, 239, 428, 431, 769, 819, 853
MflI RGATCY 2 cut(s) 174, 884
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 8 cut(s) 12, 52, 261, 283, 431, 487, 737, 781
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 9 cut(s) 43, 58, 238, 353, 508, 554, 675, 754, 841
MseI TTAA 2 cut(s) 447, 606
MslI CAYNNNNRTG 2 cut(s) 298, 903
MspR9I CCNGG 2 cut(s) 180, 267
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 2 cut(s) 180, 267
MwoI GCNNNNNNNGC 4 cut(s) 360, 382, 527, 850
NcoI CCATGG 1 cut(s) 407
NdeII GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
NlaIII CATG 7 cut(s) 411, 530, 593, 683, 716, 836, 884
NlaIV GGNNCC 3 cut(s) 79, 176, 765
NmeAIII GCCGAG 2 cut(s) 106, 352
NmuCI GTSAC 3 cut(s) 464, 493, 702
NspI RCATGY 2 cut(s) 716, 836
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 1 cut(s) 679
PciI ACATGT 1 cut(s) 832
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 108, 683
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 735
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 178, 265
PspGI CCWGG 2 cut(s) 178, 265
PspN4I GGNNCC 3 cut(s) 79, 176, 765
PspPI GGNCC 3 cut(s) 87, 764, 809
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 174, 884
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 4 cut(s) 131, 212, 405, 539
RsaNI GTAC 4 cut(s) 130, 211, 404, 538
RseI CAYNNNNRTG 2 cut(s) 298, 903
SalI GTCGAC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 447, 606
SatI GCNGC 1 cut(s) 734
Sau3AI GATC 9 cut(s) 148, 174, 201, 310, 629, 676, 801, 884, 895
Sau96I GGNCC 3 cut(s) 87, 764, 809
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 180, 267
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 2 cut(s) 594, 909
SfcI CTRYAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 3 cut(s) 87, 764, 809
SmiMI CAYNNNNRTG 2 cut(s) 298, 903
SmlI CTYRAG 3 cut(s) 513, 672, 845
SmoI CTYRAG 3 cut(s) 513, 672, 845
Sse9I AATT 8 cut(s) 12, 52, 261, 283, 431, 487, 737, 781
SsiI CCGC 3 cut(s) 90, 695, 767
SspI AATATT 1 cut(s) 338
SspMI CTAG 4 cut(s) 276, 483, 522, 582
StyD4I CCNGG 2 cut(s) 178, 265
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 2 cut(s) 190, 604
TaqI TCGA 5 cut(s) 111, 151, 321, 368, 755
TasI AATT 8 cut(s) 12, 52, 261, 283, 431, 487, 737, 781
TatI WGTACW 2 cut(s) 210, 537
TfiI GAWTC 2 cut(s) 108, 683
Tru1I TTAA 2 cut(s) 447, 606
Tru9I TTAA 2 cut(s) 447, 606
TseFI GTSAC 3 cut(s) 464, 493, 702
TseI GCWGC 1 cut(s) 733
Tsp45I GTSAC 3 cut(s) 464, 493, 702
TspDTI ATGAA 3 cut(s) 803, 853, 869
TspGWI ACGGA 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 87, 764, 809
XapI RAATTY 1 cut(s) 487
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 2 cut(s) 716, 836
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 4 cut(s) 276, 483, 522, 582
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.