Rh3BG129100
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012757
Physical Location & Seq
Reverse (-)
10923076 .. 10925673
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG129100.1

Sequence Viewer

Length: 936 bp
ATGTATAGGGGAATTGAAGTTCTATCTCCAGCCTCCTATCTCCAAACCTCAAATTGGTTGTTTCAAGAAAGCAAAGGTGCCGAGTGGACCGCAGAAGAGAACAAGCGATTCGAAAATGCTCTTGCTCTGTATGATAAGGACACCCCCGATCGATGGCACAAGGTGGCTTCTTGGATCCCTGGAAAGACCGTAGGCGATGTGATCAAGCAGTACAAGGAGTTGGAAGAAGATGTCAGTGATATTGAGGCTGGTCTTATCCCAATTCCTGGGTATTCTAGTAATAATTCTTTCACATTGGAGTGGGCTGACGATCAAGGCTTCGATGGATTGAAGCAATATTATAGTACTGTTGGTGGCAAGAGAGGCTCGTCGACTCGGCCGTCTGAGCAAGAAAGAAAGAAAGGTGTACCATGGACTGAAGAAGAGCACAGGCAATTTCTGATGGGACTTAAAAAGTATGGTAAAGGTGACTGGAGAAATATCTCTAGAAATTTTGTGACCTCTCGGACACCTACTCAAGTAGCCAGTCATGCTCAAAAGTATTATATCAGGCAACTTACAGGAGGCAAAGACAAGAGAAGGTCTAGCATCCATGACATCACAACCGTTAACCTGTCAGATACCAAATCTGGATCACAAGAGAGTAATCAGAGTAATACTAAAAGTCCTCCGTCTCAAGATCATGATTCTGCAGTTGCGGTTCAGTCACAGCAACATGCAAAGGTGAGTAATAAGCAGCAATTTGACTGGAAAGTGTCGAAGGAGGGACCGCAAATGGTCTTCAATTCAATGAATGGGAATGCAATCATTGGACCTTTCTTTGGGATTTCTTCACATGTTCCTAAGATTGAGGAGCAAGATTTCTTCATTGGCAATACTTTTCATGGATCTCAGTTTGATCATCACAATGTGCGTTTTGAGATGCAATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

311

Amino Acids

35.43

Weight (kDa)

6.81

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 72 8.1e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 76 3.9e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 136 - 181 1.8e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 1 cut(s) 371
AciI CCGC 3 cut(s) 90, 698, 770
AclWI GGATC 4 cut(s) 169, 182, 640, 895
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 438
AdeI CACNNNGTG 2 cut(s) 163, 910
AfaI GTAC 3 cut(s) 212, 346, 408
AfiI CCNNNNNNNGG 4 cut(s) 54, 153, 266, 821
AflIII ACRYGT 1 cut(s) 835
AgsI TTSAA 5 cut(s) 17, 65, 331, 784, 789
AjnI CCWGG 2 cut(s) 178, 265
AloI GAACNNNNNNTCC 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 4 cut(s) 169, 182, 640, 895
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 736
ApoI RAATTY 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 87, 767, 812
AsuHPI GGTGA 2 cut(s) 479, 736
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 3 cut(s) 87, 767, 812
BamHI GGATCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 748
BccI CCATC 3 cut(s) 147, 317, 436
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 180, 267
BclI TGATCA 2 cut(s) 201, 898
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 3 cut(s) 276, 486, 585
BfmI CTRYAG 1 cut(s) 690
BisI GCNGC 1 cut(s) 737
BlsI GCNGC 1 cut(s) 738
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 2 cut(s) 180, 267
Bme18I GGWCC 3 cut(s) 87, 767, 812
BmgT120I GGNCC 3 cut(s) 87, 767, 812
BmiI GGNNCC 3 cut(s) 79, 176, 768
BmrFI CCNGG 2 cut(s) 180, 267
BmsI GCATC 2 cut(s) 597, 912
BpiI GAAGAC 1 cut(s) 772
BpmI CTGGAG 2 cut(s) 12, 493
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 501, 660
Bsa29I ATCGAT 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 178, 266, 410
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 153, 266, 821
Bse1I ACTGG 3 cut(s) 476, 525, 752
BseBI CCWGG 2 cut(s) 180, 267
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 178, 266, 410
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 54, 153, 266, 821
BseMII CTCAG 2 cut(s) 375, 905
BseNI ACTGG 3 cut(s) 476, 525, 752
BseRI GAGGAG 1 cut(s) 866
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 748
Bsh1285I CGRYCG 2 cut(s) 151, 380
BshFI GGCC 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 2 cut(s) 151, 380
BsiHKAI GWGCWC 1 cut(s) 429
BslFI GGGAC 2 cut(s) 459, 780
BslI CCNNNNNNNGG 4 cut(s) 54, 153, 266, 821
BsmAI GTCTC 1 cut(s) 678
BsmBI CGTCTC 1 cut(s) 678
BsmFI GGGAC 2 cut(s) 459, 780
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 3 cut(s) 90, 698, 770
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 376, 904
BspDI ATCGAT 1 cut(s) 151
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 3 cut(s) 79, 176, 768
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 4 cut(s) 169, 182, 640, 895
BspQI GCTCTTC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 3 cut(s) 476, 525, 752
BssECI CCNNGG 3 cut(s) 178, 266, 410
BssMI GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 2 cut(s) 180, 267
Bst4CI ACNGT 3 cut(s) 190, 349, 607
Bst6I CTCTTC 2 cut(s) 90, 417
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 384, 843, 891
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 588
BstKTI GATC 8 cut(s) 151, 177, 204, 313, 635, 682, 890, 901
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
BstMCI CGRYCG 2 cut(s) 151, 380
BstMWI GCNNNNNNNGC 3 cut(s) 363, 385, 530
BstNI CCWGG 2 cut(s) 180, 267
BstNSI RCATGY 2 cut(s) 719, 839
BstSCI CCNGG 2 cut(s) 178, 265
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 748
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 2 cut(s) 174, 887
BstYI RGATCY 2 cut(s) 174, 887
BstZI CGGCCG 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 1 cut(s) 379
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 682
Cfr13I GGNCC 3 cut(s) 87, 767, 812
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 3 cut(s) 211, 345, 407
CviAII CATG 7 cut(s) 411, 530, 593, 683, 716, 836, 884
CviJI RGCY 8 cut(s) 32, 167, 248, 305, 318, 366, 379, 524
CviKI_1 RGCY 8 cut(s) 32, 167, 248, 305, 318, 366, 379, 524
CviQI GTAC 3 cut(s) 211, 345, 407
DdeI CTNAG 3 cut(s) 384, 843, 891
DpnI GATC 8 cut(s) 150, 176, 203, 312, 634, 681, 889, 900
DpnII GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
DraIII CACNNNGTG 2 cut(s) 163, 910
DrdI GACNNNNNNGTC 1 cut(s) 379
DseDI GACNNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 377
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 90, 417
EarI CTCTTC 2 cut(s) 90, 417
EclXI CGGCCG 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 410
Eco47I GGWCC 3 cut(s) 87, 767, 812
Eco52I CGGCCG 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 178, 265
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 678
FaeI CATG 7 cut(s) 414, 533, 596, 686, 719, 839, 887
FaqI GGGAC 2 cut(s) 459, 780
FatI CATG 7 cut(s) 410, 529, 592, 682, 715, 835, 883
FbaI TGATCA 2 cut(s) 201, 898
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 1 cut(s) 737
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 1 cut(s) 737
FspBI CTAG 3 cut(s) 276, 486, 585
GluI GCNGC 1 cut(s) 737
GsuI CTGGAG 2 cut(s) 12, 493
HaeIII GGCC 1 cut(s) 379
Hin1II CATG 7 cut(s) 414, 533, 596, 686, 719, 839, 887
HincII GTYRAC 2 cut(s) 372, 610
HindII GTYRAC 2 cut(s) 372, 610
HinfI GANTC 3 cut(s) 108, 373, 686
HpaI GTTAAC 1 cut(s) 610
HphI GGTGA 2 cut(s) 479, 736
Hpy166II GTNNAC 4 cut(s) 87, 372, 407, 610
Hpy188I TCNGA 5 cut(s) 385, 441, 507, 619, 651
Hpy188III TCNNGA 5 cut(s) 65, 486, 630, 677, 683
Hpy8I GTNNAC 4 cut(s) 87, 372, 407, 610
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 573, 754
HpyCH4III ACNGT 3 cut(s) 190, 349, 607
HpyCH4V TGCA 4 cut(s) 692, 719, 803, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 385, 530
HpyF3I CTNAG 3 cut(s) 384, 843, 891
Hsp92II CATG 7 cut(s) 414, 533, 596, 686, 719, 839, 887
Ksp22I TGATCA 2 cut(s) 201, 898
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 2 cut(s) 597, 912
MaeI CTAG 3 cut(s) 276, 486, 585
MaeIII GTNAC 3 cut(s) 467, 496, 705
MalI GATC 8 cut(s) 150, 176, 203, 312, 634, 681, 889, 900
MboI GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
MboII GAAGA 8 cut(s) 107, 236, 239, 431, 434, 772, 822, 856
MflI RGATCY 2 cut(s) 174, 887
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 8 cut(s) 12, 52, 261, 283, 434, 490, 740, 784
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 9 cut(s) 43, 58, 238, 356, 511, 557, 678, 757, 844
MseI TTAA 2 cut(s) 450, 609
MslI CAYNNNNRTG 2 cut(s) 298, 906
MspR9I CCNGG 2 cut(s) 180, 267
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 180, 267
MwoI GCNNNNNNNGC 3 cut(s) 363, 385, 530
NcoI CCATGG 1 cut(s) 410
NdeII GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
NlaIII CATG 7 cut(s) 414, 533, 596, 686, 719, 839, 887
NlaIV GGNNCC 3 cut(s) 79, 176, 768
NmeAIII GCCGAG 2 cut(s) 106, 355
NmuCI GTSAC 3 cut(s) 467, 496, 705
NspI RCATGY 2 cut(s) 719, 839
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 1 cut(s) 682
PciI ACATGT 1 cut(s) 835
PciSI GCTCTTC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 805
PfeI GAWTC 2 cut(s) 108, 686
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 738
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 1 cut(s) 835
Psp6I CCWGG 2 cut(s) 178, 265
PspGI CCWGG 2 cut(s) 178, 265
PspN4I GGNNCC 3 cut(s) 79, 176, 768
PspPI GGNCC 3 cut(s) 87, 767, 812
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 174, 887
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 3 cut(s) 212, 346, 408
RsaNI GTAC 3 cut(s) 211, 345, 407
RseI CAYNNNNRTG 2 cut(s) 298, 906
SalI GTCGAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 450, 609
SatI GCNGC 1 cut(s) 737
Sau3AI GATC 8 cut(s) 148, 174, 201, 310, 632, 679, 887, 898
Sau96I GGNCC 3 cut(s) 87, 767, 812
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 180, 267
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 2 cut(s) 597, 912
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 3 cut(s) 87, 767, 812
SmiMI CAYNNNNRTG 2 cut(s) 298, 906
SmlI CTYRAG 2 cut(s) 516, 675
SmoI CTYRAG 2 cut(s) 516, 675
Sse9I AATT 8 cut(s) 12, 52, 261, 283, 434, 490, 740, 784
SsiI CCGC 3 cut(s) 90, 698, 770
SspI AATATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 276, 486, 585
StyD4I CCNGG 2 cut(s) 178, 265
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 3 cut(s) 190, 349, 607
TaqI TCGA 5 cut(s) 111, 151, 321, 371, 758
TasI AATT 8 cut(s) 12, 52, 261, 283, 434, 490, 740, 784
TatI WGTACW 2 cut(s) 210, 344
TfiI GAWTC 2 cut(s) 108, 686
Tru1I TTAA 2 cut(s) 450, 609
Tru9I TTAA 2 cut(s) 450, 609
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 3 cut(s) 467, 496, 705
TseI GCWGC 1 cut(s) 736
Tsp45I GTSAC 3 cut(s) 467, 496, 705
TspDTI ATGAA 3 cut(s) 806, 856, 872
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 87, 767, 812
XapI RAATTY 1 cut(s) 490
XbaI TCTAGA 1 cut(s) 485
XceI RCATGY 2 cut(s) 719, 839
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 3 cut(s) 276, 486, 585
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.