MD04G1147800.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012757
Physical Location & Seq
Forward (+)
23595114 .. 23597829
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1147800.v1.1.491

Sequence Viewer

Length: 924 bp
ATGTTCAGAGGAATGGAAATTCCATCTCCAACCTCCTATCTGCAGAACTCCAATTGGTTGTTTGAAGAAAGCACGGGAGCCGAATGGACTGTGGAAGAGAACAAGCTATTTGAAAATGCTCTCGCTTTATACGATAAGGATACACCCGATCGATGGCTCAGGGTGGCGGCTATGATCCCTGGAAAGACTGTTGGAGATGTGATCAAACAGTACAAGGAATTAGAAGAAGATGTTAGTGATATCGAAGCTGGGCTTATCCCAATTCCTGGTTACACCAGTAACAATTTCACAATGGAGTGGGTTAACAATCAGGGCTTTGATGGATTGGAGCAGTTTTACAGTGTTGGTGGAAAGCGAAGCTCCTCGACTAGGCCCGCAGATCAGGAGAGGAAGAAAGGGGTGCCATGGACAGAAGAAGAGCACAGGCAATTTCTGATGGGCCTTAAAAAGTATGGAAAAGGTGACTGGAGAAATATCTCTCGAAATTTTGTGATCACAAGGACGCCTACTCAGGTTGCTAGTCATGCACAAAAATACTTTATCAGGCAACTCACAGGAGGGAAGGACAAGAGAAGATCTAGCATCCATGACATCACAACCGTCAATCTTCCTGATGTGAAACCCGCCTCACCAGACAGTACTTCTAAAAGCCCACCATCATCGGATCTCTCCTCAACCCTGGTGCAGCAGCCACACCAGCACCAGAAGTTGGCCAGCATGAGCATTGACTGGAAATCGCCCGATGAGGGACAGCAAATGGTTTTCGGTTCTGCAAATGGGAACAACTTCATGGGACCGTTTTGTGGGATGTCTTCACATGTACCTAAGCTTGAGGAGCAAAATTTTCTGAGTGGCAATCTTCATGGATCGCAGTTGGGACATTACAACGCCTGTTTTGAGATGCAATCAATGCGATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

308

Amino Acids

34.71

Weight (kDa)

6.09

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 72 6e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 76 1.1e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 134 - 180 9.1e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012757)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38090
fragaria_vesca FvH4_6g11950
malus_domestica MD04G1147800.v1.1 MD12G1161100.v1.1
prunus_persica Prupe.6G271600_v2.0.a1
pyrus_communis pycom04g13340 pycom12g15290
rosa_chinensis RchiOBHm_Chr3g0463761
rosa_laevigata RLG00000024759
rosa_multiflora Rmu_sc0000142.1_g000001 Rmu_sc0003267.1_g000043
rosa_roxburghii Rroxscaffold_6G00416330
rosa_rugosa Rorug03G0067300
rosa_samantha Rh3AG124500 Rh3BG129100 Rh3CG131400 Rh3DG129700
rosa_wichuraiana Rw3G010520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccB7I CCANNNNNTGG 2 cut(s) 266, 709
AciI CCGC 3 cut(s) 167, 375, 624
AclWI GGATC 3 cut(s) 169, 672, 874
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 3 cut(s) 18, 484, 841
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 3 cut(s) 212, 640, 822
AfiI CCNNNNNNNGG 6 cut(s) 153, 266, 369, 709, 746, 803
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 2 cut(s) 65, 113
AjnI CCWGG 3 cut(s) 178, 265, 678
AluBI AGCT 4 cut(s) 106, 248, 360, 829
AluI AGCT 4 cut(s) 106, 248, 360, 829
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 3 cut(s) 169, 672, 874
AoxI GGCC 3 cut(s) 371, 439, 711
ApeKI GCWGC 2 cut(s) 685, 688
ApoI RAATTY 3 cut(s) 18, 484, 841
Asp700I GAANNNNTTC 1 cut(s) 785
AspS9I GGNCC 3 cut(s) 372, 439, 794
AsuHPI GGTGA 2 cut(s) 473, 621
AvaII GGWCC 1 cut(s) 794
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 697, 700
BccI CCATC 5 cut(s) 31, 147, 314, 430, 664
BciT130I CCWGG 3 cut(s) 180, 267, 680
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 2 cut(s) 201, 492
BfaI CTAG 3 cut(s) 369, 519, 579
BfmI CTRYAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 133
BglII AGATCT 1 cut(s) 575
BisI GCNGC 3 cut(s) 168, 686, 689
BlsI GCNGC 3 cut(s) 169, 687, 690
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 180, 267, 680
Bme18I GGWCC 1 cut(s) 794
BmgT120I GGNCC 3 cut(s) 372, 439, 794
BmiI GGNNCC 3 cut(s) 79, 402, 795
BmrFI CCNGG 3 cut(s) 180, 267, 680
BmsI GCATC 2 cut(s) 591, 891
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 1 cut(s) 487
Bpu10I CCTNAGC 2 cut(s) 158, 825
BpuEI CTTGAG 1 cut(s) 851
Bsa29I ATCGAT 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 178, 404, 678
Bsc4I CCNNNNNNNGG 6 cut(s) 153, 266, 369, 709, 746, 803
Bse1I ACTGG 3 cut(s) 276, 470, 734
BseBI CCWGG 3 cut(s) 180, 267, 680
BseCI ATCGAT 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 178, 404, 678
BseGI GGATG 2 cut(s) 582, 813
BseLI CCNNNNNNNGG 6 cut(s) 153, 266, 369, 709, 746, 803
BseMII CTCAG 3 cut(s) 172, 524, 839
BseNI ACTGG 3 cut(s) 276, 470, 734
BseRI GAGGAG 3 cut(s) 352, 661, 848
BseXI GCAGC 2 cut(s) 697, 700
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 704
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 373, 441, 713
BshNI GGYRCC 1 cut(s) 400
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 423
BslFI GGGAC 3 cut(s) 762, 807, 891
BslI CCNNNNNNNGG 6 cut(s) 153, 266, 369, 709, 746, 803
BsmFI GGGAC 3 cut(s) 762, 807, 891
BsnI GGCC 3 cut(s) 373, 441, 713
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 3 cut(s) 167, 375, 624
BspANI GGCC 3 cut(s) 373, 441, 713
BspCNI CTCAG 3 cut(s) 171, 523, 840
BspDI ATCGAT 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 79, 402, 795
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 3 cut(s) 169, 672, 874
BspQI GCTCTTC 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 400
BsrI ACTGG 3 cut(s) 276, 470, 734
BssECI CCNNGG 3 cut(s) 178, 404, 678
BssMI GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 3 cut(s) 180, 267, 680
Bst4CI ACNGT 7 cut(s) 91, 190, 210, 341, 601, 638, 798
Bst6I CTCTTC 2 cut(s) 90, 411
BstACI GRCGYC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 910
BstC8I GCNNGC 2 cut(s) 375, 715
BstDEI CTNAG 4 cut(s) 158, 510, 825, 848
BstDSI CCRYGG 1 cut(s) 404
BstENI CCTNNNNNAGG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 582, 813
BstKTI GATC 8 cut(s) 151, 177, 204, 382, 495, 578, 667, 869
BstMBI GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 524, 697, 835, 910
BstNI CCWGG 3 cut(s) 180, 267, 680
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 178, 265, 678
BstSFI CTRYAG 1 cut(s) 41
BstV1I GCAGC 2 cut(s) 697, 700
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 575, 664
BstYI RGATCY 2 cut(s) 575, 664
Bsu15I ATCGAT 1 cut(s) 151
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 373, 441, 713
BsuTUI ATCGAT 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 582, 813
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 375, 715
Cfr13I GGNCC 3 cut(s) 372, 439, 794
ClaI ATCGAT 1 cut(s) 151
CseI GACGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 211, 639, 821
CviAII CATG 7 cut(s) 405, 524, 587, 718, 790, 818, 863
CviQI GTAC 3 cut(s) 211, 639, 821
DdeI CTNAG 4 cut(s) 158, 510, 825, 848
DpnI GATC 8 cut(s) 150, 176, 203, 381, 494, 577, 666, 868
DpnII GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 90, 411
EarI CTCTTC 2 cut(s) 90, 411
Eco130I CCWWGG 1 cut(s) 404
Eco32I GATATC 2 cut(s) 241, 917
Eco47I GGWCC 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 178, 265, 678
EcoRV GATATC 2 cut(s) 241, 917
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 7 cut(s) 408, 527, 590, 721, 793, 821, 866
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 3 cut(s) 762, 807, 891
FatI CATG 7 cut(s) 404, 523, 586, 717, 789, 817, 862
FauI CCCGC 2 cut(s) 382, 631
FbaI TGATCA 2 cut(s) 201, 492
Fnu4HI GCNGC 3 cut(s) 168, 686, 689
FokI GGATG 2 cut(s) 569, 820
Fsp4HI GCNGC 3 cut(s) 168, 686, 689
FspBI CTAG 3 cut(s) 369, 519, 579
GluI GCNGC 3 cut(s) 168, 686, 689
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 3 cut(s) 373, 441, 713
HgaI GACGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 7 cut(s) 408, 527, 590, 721, 793, 821, 866
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 827
HpaI GTTAAC 1 cut(s) 304
HphI GGTGA 2 cut(s) 473, 621
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 8, 435, 664, 849
Hpy188III TCNNGA 3 cut(s) 383, 480, 611
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 556
HpyCH4III ACNGT 7 cut(s) 91, 190, 210, 341, 601, 638, 798
HpyCH4V TGCA 5 cut(s) 43, 527, 685, 773, 904
HpyF10VI GCNNNNNNNGC 4 cut(s) 524, 697, 835, 910
HpyF3I CTNAG 4 cut(s) 158, 510, 825, 848
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 7 cut(s) 408, 527, 590, 721, 793, 821, 866
Ksp22I TGATCA 2 cut(s) 201, 492
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 4 cut(s) 77, 328, 365, 835
Lsp1109I GCAGC 2 cut(s) 697, 700
LweI GCATC 2 cut(s) 591, 891
MaeI CTAG 3 cut(s) 369, 519, 579
MaeIII GTNAC 3 cut(s) 269, 278, 461
MalI GATC 8 cut(s) 150, 176, 203, 381, 494, 577, 666, 868
MboI GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 2 cut(s) 575, 664
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 8 cut(s) 18, 52, 218, 261, 283, 428, 484, 841
MluNI TGGCCA 1 cut(s) 713
MmeI TCCRAC 2 cut(s) 53, 172
MnlI CCTC 8 cut(s) 43, 373, 381, 551, 637, 682, 739, 826
Mox20I TGGCCA 1 cut(s) 713
MroXI GAANNNNTTC 1 cut(s) 785
MscI TGGCCA 1 cut(s) 713
MseI TTAA 2 cut(s) 303, 444
Msp20I TGGCCA 1 cut(s) 713
MspR9I CCNGG 3 cut(s) 180, 267, 680
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 3 cut(s) 180, 267, 680
MwoI GCNNNNNNNGC 4 cut(s) 524, 697, 835, 910
NcoI CCATGG 1 cut(s) 404
NdeII GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
NlaIII CATG 7 cut(s) 408, 527, 590, 721, 793, 821, 866
NlaIV GGNNCC 3 cut(s) 79, 402, 795
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 1 cut(s) 821
PciI ACATGT 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 785
PflMI CCANNNNNTGG 2 cut(s) 266, 709
PkrI GCNGC 3 cut(s) 169, 687, 690
Ple19I CGATCG 1 cut(s) 151
PscI ACATGT 1 cut(s) 817
Psp6I CCWGG 3 cut(s) 178, 265, 678
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 3 cut(s) 178, 265, 678
PspN4I GGNNCC 3 cut(s) 79, 402, 795
PspPI GGNCC 3 cut(s) 372, 439, 794
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 2 cut(s) 575, 664
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 3 cut(s) 212, 640, 822
RsaNI GTAC 3 cut(s) 211, 639, 821
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 303, 444
SatI GCNGC 3 cut(s) 168, 686, 689
Sau3AI GATC 8 cut(s) 148, 174, 201, 379, 492, 575, 664, 866
Sau96I GGNCC 3 cut(s) 372, 439, 794
ScaI AGTACT 1 cut(s) 640
ScrFI CCNGG 3 cut(s) 180, 267, 680
SduI GDGCHC 1 cut(s) 423
SetI ASST 8 cut(s) 35, 108, 250, 362, 463, 516, 826, 831
SfaNI GCATC 2 cut(s) 591, 891
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 8 cut(s) 18, 52, 218, 261, 283, 428, 484, 841
SsiI CCGC 3 cut(s) 167, 375, 624
SspMI CTAG 3 cut(s) 369, 519, 579
StyD4I CCNGG 3 cut(s) 178, 265, 678
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 7 cut(s) 91, 190, 210, 341, 601, 638, 798
TaqI TCGA 4 cut(s) 151, 243, 365, 481
TasI AATT 8 cut(s) 18, 52, 218, 261, 283, 428, 484, 841
TatI WGTACW 2 cut(s) 210, 638
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 303, 444
Tru9I TTAA 2 cut(s) 303, 444
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 685, 688
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 778, 851
TspRI CASTG 1 cut(s) 346
Van91I CCANNNNNTGG 2 cut(s) 266, 709
VpaK11BI GGWCC 1 cut(s) 794
XagI CCTNNNNNAGG 1 cut(s) 367
XapI RAATTY 3 cut(s) 18, 484, 841
XceI RCATGY 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 3 cut(s) 369, 519, 579
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.