AT2G38270

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015118
Physical Location & Seq
Reverse (-)
16031185 .. 16033169
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38270.1

Sequence Viewer

Length: 882 bp
ATGGCTGCAATCACCATTTCTTCCTCCTTGCACGCCTCAGCCTCTCCGCGTGTTGTTCGTCCACATGTTTCTCGAAATACCCCTGTGATCACCCTCTATTCACGCTTCACACCATCCTTCTCCTTCCCATCTCTCTCCTTCACACTCCGTGACACAGCTCCGTCTCGTCGTCGTTCCTTCTTTATCGCCTCCGCCGTCAAATCTCTAACGGAGACGGAGCTGCTTCCAATCACAGAGGCTGATTCAATCCCGTCCGCTTCCGGTGTATACGCTGTATACGATAAGAGCGACGAGCTTCAGTTCGTCGGAATTTCTCGGAACATCGCTGCGAGTGTCTCTGCTCATCTCAAATCTGTGCCGGAGCTTTGTGGCTCCGTTAAGGTTGGAATAGTAGAAGAACCAGATAAAGCAGTTTTAACACAAGCATGGAAATTATGGATAGAAGAACATATAAAAGTAACTGGAAAAGTTCCGCCGGGGAATAAGTCAGGGAACAACACATTTGTCAAACAAACTCCGAGGAAGAAATCCGATATCCGTCTCACTCCAGGTCGCCATGTTGAGCTCACGGTTCCTTTGGAGGAACTGATTGACCGTTTAGTGAAAGAGAGCAAAGTGGTAGCTTTCATAAAAGGATCAAGGAGTGCTCCTCAATGTGGATTCTCACAGAGAGTTGTTGGGATTCTTGAAAGCCAAGGAGTTGATTATGAAACTGTTGATGTTCTTGACGATGAGTATAATCATGGGCTAAGGGAGACGCTTAAGAACTACAGCAATTGGCCAACGTTTCCACAGATATTTGTGAAAGGAGAACTTGTAGGAGGATGTGATATTTTGACCTCAATGTATGAAAATGGTGAACTTGCCAATATCTTGAACTAG

Protein Analysis

293

Amino Acids

32.21

Weight (kDa)

7.72

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 206 - 273 1.6e-19 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38270
fragaria_vesca FvH4_6g11240
malus_domestica MD00G1172400.v1.1
prunus_persica Prupe.6G279600_v2.0.a1
pyrus_communis pycom12g16270
rosa_chinensis RchiOBHm_Chr3g0462751
rosa_laevigata RLG00000024835
rosa_multiflora Rmu_co8134540.1_g000001 Rmu_sc0000766.1_g000004
rosa_roxburghii Rroxscaffold_6G00417230
rosa_rugosa Rorug03G0059000
rosa_samantha Rh3AG117000 Rh3BG120700 Rh3CG123700 Rh3DG122400
rosa_wichuraiana Rw3G009910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 267, 276
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 47, 192, 255, 473
AclI AACGTT 1 cut(s) 785
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 779
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 281
AdeI CACNNNGTG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 656
AflII CTTAAG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 3 cut(s) 246, 689, 877
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 6 cut(s) 158, 220, 295, 364, 565, 623
AluI AGCT 6 cut(s) 158, 220, 295, 364, 565, 623
Alw21I GWGCWC 2 cut(s) 567, 649
Alw26I GTCTC 5 cut(s) 168, 206, 340, 545, 749
AlwI GGATC 1 cut(s) 643
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 779
ApeKI GCWGC 3 cut(s) 5, 220, 326
ApoI RAATTY 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 4, 82, 869
BalI TGGCCA 1 cut(s) 781
BanII GRGCYC 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 567, 649
BbvCI CCTCAGC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 207, 313
BccI CCATC 2 cut(s) 121, 136
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 5 cut(s) 168, 206, 340, 545, 749
BfaI CTAG 1 cut(s) 880
BfmI CTRYAG 1 cut(s) 769
BfrI CTTAAG 1 cut(s) 761
BisI GCNGC 3 cut(s) 6, 221, 327
BlsI GCNGC 3 cut(s) 7, 222, 328
Bme1390I CCNGG 2 cut(s) 477, 549
BmiI GGNNCC 2 cut(s) 373, 573
BmrFI CCNGG 2 cut(s) 477, 549
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 2 cut(s) 37, 749
BpuMI CCSGG 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 476, 518, 694
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 3 cut(s) 476, 518, 694
BseGI GGATG 2 cut(s) 113, 830
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 639
BseXI GCAGC 2 cut(s) 207, 313
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 781
BsiHKAI GWGCWC 2 cut(s) 567, 649
BsiSI CCGG 3 cut(s) 261, 359, 476
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 5 cut(s) 168, 206, 340, 545, 749
BsmBI CGTCTC 4 cut(s) 168, 206, 545, 749
BsnI GGCC 1 cut(s) 781
Bsp1286I GDGCHC 2 cut(s) 567, 649
Bsp143I GATC 2 cut(s) 87, 635
BspACI CCGC 4 cut(s) 47, 192, 255, 473
BspANI GGCC 1 cut(s) 781
BspCNI CTCAG 1 cut(s) 50
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 373, 573
BspPI GGATC 1 cut(s) 643
BspTI CTTAAG 1 cut(s) 761
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 3 cut(s) 476, 518, 694
BssMI GATC 2 cut(s) 87, 635
BssNAI GTATAC 2 cut(s) 268, 277
BssT1I CCWWGG 1 cut(s) 694
Bst1107I GTATAC 2 cut(s) 268, 277
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 571, 596, 715
BstAFI CTTAAG 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 37, 749
BstF5I GGATG 2 cut(s) 113, 830
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 2 cut(s) 90, 638
BstMAI GTCTC 5 cut(s) 168, 206, 340, 545, 749
BstMBI GATC 2 cut(s) 87, 635
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 475, 547
BstSFI CTRYAG 1 cut(s) 769
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 207, 313
BstZ17I GTATAC 2 cut(s) 268, 277
BsuRI GGCC 1 cut(s) 781
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 113, 830
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 239
CseI GACGC 1 cut(s) 766
CviAII CATG 4 cut(s) 65, 426, 557, 743
DdeI CTNAG 2 cut(s) 37, 749
DpnI GATC 2 cut(s) 89, 637
DpnII GATC 2 cut(s) 87, 635
DraIII CACNNNGTG 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 779
EciI GGCGGA 2 cut(s) 181, 462
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 547
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 694
Esp3I CGTCTC 4 cut(s) 168, 206, 545, 749
FaeI CATG 4 cut(s) 68, 429, 560, 746
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FatI CATG 4 cut(s) 64, 425, 556, 742
FbaI TGATCA 1 cut(s) 87
FblI GTMKAC 2 cut(s) 267, 276
Fnu4HI GCNGC 3 cut(s) 6, 221, 327
FokI GGATG 2 cut(s) 100, 837
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 3 cut(s) 6, 221, 327
FspBI CTAG 1 cut(s) 880
GluI GCNGC 3 cut(s) 6, 221, 327
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 1 cut(s) 781
HapII CCGG 3 cut(s) 261, 359, 476
HgaI GACGC 1 cut(s) 766
Hin1II CATG 4 cut(s) 68, 429, 560, 746
HinfI GANTC 3 cut(s) 242, 660, 682
HpaII CCGG 3 cut(s) 261, 359, 476
HphI GGTGA 3 cut(s) 4, 82, 869
Hpy166II GTNNAC 4 cut(s) 62, 268, 277, 860
Hpy188I TCNGA 4 cut(s) 308, 318, 519, 532
Hpy188III TCNNGA 4 cut(s) 72, 686, 725, 874
Hpy8I GTNNAC 4 cut(s) 62, 268, 277, 860
Hpy99I CGWCG 4 cut(s) 171, 174, 293, 308
HpyAV CCTTC 4 cut(s) 127, 133, 148, 187
HpyCH4III ACNGT 3 cut(s) 571, 596, 715
HpyCH4IV ACGT 1 cut(s) 785
HpyCH4V TGCA 2 cut(s) 8, 31
HpyF3I CTNAG 2 cut(s) 37, 749
HpySE526I ACGT 1 cut(s) 785
Hsp92II CATG 4 cut(s) 68, 429, 560, 746
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 2 cut(s) 87, 635
LmnI GCTCC 5 cut(s) 163, 217, 361, 377, 652
LpnPI CCDG 9 cut(s) 96, 274, 372, 414, 447, 474, 489, 534, 561
Lsp1109I GCAGC 2 cut(s) 207, 313
MaeI CTAG 1 cut(s) 880
MaeII ACGT 1 cut(s) 785
MaeIII GTNAC 2 cut(s) 149, 457
MalI GATC 2 cut(s) 89, 637
MboI GATC 2 cut(s) 87, 635
MboII GAAGA 4 cut(s) 12, 407, 455, 535
MfeI CAATTG 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 567, 649
MlsI TGGCCA 1 cut(s) 781
MluCI AATT 3 cut(s) 309, 431, 775
MluNI TGGCCA 1 cut(s) 781
MmeI TCCRAC 2 cut(s) 286, 364
Mox20I TGGCCA 1 cut(s) 781
MscI TGGCCA 1 cut(s) 781
MseI TTAA 3 cut(s) 378, 416, 762
MslI CAYNNNNRTG 1 cut(s) 424
Msp20I TGGCCA 1 cut(s) 781
MspCI CTTAAG 1 cut(s) 761
MspI CCGG 3 cut(s) 261, 359, 476
MspR9I CCNGG 2 cut(s) 477, 549
MunI CAATTG 1 cut(s) 775
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 49
NciI CCSGG 1 cut(s) 477
NdeII GATC 2 cut(s) 87, 635
NlaIII CATG 4 cut(s) 68, 429, 560, 746
NlaIV GGNNCC 2 cut(s) 373, 573
NmuCI GTSAC 1 cut(s) 149
NspI RCATGY 1 cut(s) 68
PciI ACATGT 1 cut(s) 64
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 276, 285
PfeI GAWTC 3 cut(s) 242, 660, 682
PkrI GCNGC 3 cut(s) 7, 222, 328
PscI ACATGT 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 373, 573
PstNI CAGNNNCTG 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 424
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 3 cut(s) 378, 416, 762
SatI GCNGC 3 cut(s) 6, 221, 327
Sau3AI GATC 2 cut(s) 87, 635
ScrFI CCNGG 2 cut(s) 477, 549
SduI GDGCHC 2 cut(s) 567, 649
SfcI CTRYAG 1 cut(s) 769
SmiMI CAYNNNNRTG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 3 cut(s) 309, 431, 775
SsiI CCGC 4 cut(s) 47, 192, 255, 473
SspMI CTAG 1 cut(s) 880
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 2 cut(s) 475, 547
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 3 cut(s) 571, 596, 715
TaiI ACGT 1 cut(s) 788
TaqI TCGA 1 cut(s) 73
TasI AATT 3 cut(s) 309, 431, 775
TfiI GAWTC 3 cut(s) 242, 660, 682
Tru1I TTAA 3 cut(s) 378, 416, 762
Tru9I TTAA 3 cut(s) 378, 416, 762
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 3 cut(s) 5, 220, 326
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 616, 723, 864
TspGWI ACGGA 6 cut(s) 137, 150, 224, 230, 364, 527
Vha464I CTTAAG 1 cut(s) 761
XapI RAATTY 1 cut(s) 309
XceI RCATGY 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 267, 276
XspI CTAG 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.