Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8134540.1

Orthogroup ID

OG0015118

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 256

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8134540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggaagaacacataaaagctactgggaaagtgcctccaggaaatgaatcaggcaatgccacctgggtccggccggcacctaagaagaagaagcctgatctgcggctgacaccaggtcgtcacgtgcagttgacggttccattggagcaacttgtggatcggttggtgaaggagaacaaggtcgtggcctttatcaagggttcacgaagtgcaccattgtgtggtttctcgcagagggttgttggcattcttgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

10.1

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38270
fragaria_vesca	FvH4_6g11240
malus_domestica	MD00G1172400.v1.1
prunus_persica	Prupe.6G279600_v2.0.a1
pyrus_communis	pycom12g16270
rosa_chinensis	RchiOBHm_Chr3g0462751
rosa_laevigata	RLG00000024835
rosa_multiflora	Rmu_co8134540.1_g000001 Rmu_sc0000766.1_g000004
rosa_roxburghii	Rroxscaffold_6G00417230
rosa_rugosa	Rorug03G0059000
rosa_samantha	Rh3AG117000 Rh3BG120700 Rh3CG123700 Rh3DG122400
rosa_wichuraiana	Rw3G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	221
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	71
AcvI	CACGTG	1 cut(s)	124
AdeI	CACNNNGTG	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	69, 221
AgsI	TTSAA	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	114
AjnI	CCWGG	3 cut(s)	37, 62, 112
AleI	CACNNNNGTG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	71, 186
ApaLI	GTGCAC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	76
BbrPI	CACGTG	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	214
BciT130I	CCWGG	3 cut(s)	39, 64, 114
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	3 cut(s)	39, 64, 114
Bme18I	GGWCC	1 cut(s)	67
BmeRI	GACNNNNNGTC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	68, 78, 138
BmrFI	CCNGG	3 cut(s)	39, 64, 114
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 221
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	39, 64, 114
BseDI	CCNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	69, 221
BseMI	GCAATG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	73, 188
BshNI	GGYRCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	70, 74
BslI	CCNNNNNNNGG	2 cut(s)	69, 221
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	73, 188
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	97, 157
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	73, 188
BspLI	GGNNCC	3 cut(s)	68, 78, 138
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	97, 157
Bst2UI	CCWGG	3 cut(s)	39, 64, 114
Bst4CI	ACNGT	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	100, 160
BstMBI	GATC	2 cut(s)	97, 157
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	3 cut(s)	39, 64, 114
BstSCI	CCNGG	3 cut(s)	37, 62, 112
BstSLI	GKGCMC	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	73, 188
Cac8I	GCNNGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	67
CsiI	ACCWGGT	1 cut(s)	112
CviJI	RGCY	5 cut(s)	20, 73, 94, 106, 188
CviKI_1	RGCY	5 cut(s)	20, 73, 94, 106, 188
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	99, 159
DpnII	GATC	2 cut(s)	97, 157
DraIII	CACNNNGTG	1 cut(s)	209
DriI	GACNNNNNGTC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
Eam1105I	GACNNNNNGTC	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	124
EcoRII	CCWGG	3 cut(s)	37, 62, 112
FaiI	YATR	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	73, 188
HapII	CCGG	2 cut(s)	70, 74
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	2 cut(s)	70, 74
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	132, 203, 212
Hpy188III	TCNNGA	2 cut(s)	204, 251
Hpy8I	GTNNAC	3 cut(s)	132, 203, 212
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	127, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	123
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	97, 157
LmnI	GCTCC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	112
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	99, 159
MboI	GATC	2 cut(s)	97, 157
MboII	GAAGA	3 cut(s)	17, 97, 100
MhlI	GDGCHC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	45, 228
MroNI	GCCGGC	1 cut(s)	73
MslI	CAYNNNNRTG	1 cut(s)	217
MspI	CCGG	2 cut(s)	70, 74
MspR9I	CCNGG	3 cut(s)	39, 64, 114
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	3 cut(s)	39, 64, 114
MwoI	GCNNNNNNNGC	1 cut(s)	100
NaeI	GCCGGC	1 cut(s)	75
NdeII	GATC	2 cut(s)	97, 157
NgoMIV	GCCGGC	1 cut(s)	73
NlaIV	GGNNCC	3 cut(s)	68, 78, 138
NmuCI	GTSAC	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	217
PctI	GAATGC	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	105
PmaCI	CACGTG	1 cut(s)	124
PmlI	CACGTG	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	37, 62, 112
PspCI	CACGTG	1 cut(s)	124
PspGI	CCWGG	3 cut(s)	37, 62, 112
PspN4I	GGNNCC	3 cut(s)	68, 78, 138
PspPI	GGNCC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	217
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	97, 157
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	3 cut(s)	39, 64, 114
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	6 cut(s)	22, 65, 82, 118, 126, 183
SexAI	ACCWGGT	1 cut(s)	112
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	217
SsiI	CCGC	1 cut(s)	103
StyD4I	CCNGG	3 cut(s)	37, 62, 112
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	126
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.