Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0015118

Physical Location & Seq

Genomic Coordinates Reverse (-)

4417471 .. 4420662

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3117 bp

ATGGCATACAATCTGAACTATTGTATAACAGAAATGGTACTATGTTTTTTCTTCATTTTTCTTGTTCTGCCATCTAAGTCTGCATTTCCTTGTGAGGATTCCAGTGATTGCAACACTCTGCTCAAATTCAAGGAGGAGCTGACAAGTGATCCCGAAGGTCATCTTCAAACTTGGAACAAAGCCAATCCCTTCTGCAACTGGACTGGAATTACATGCCACCAAAGTCTCCAAAACCGGGTTATAGGCCTTGAACTGATAGATATGGGCTTGCAAGGAAGGATATCACCATTCATATCCAACCTCTCTCTTCTTACCAACCTGTCTTTACAGAGCAATGGGTTCCATGGACAAATTCCATCTTCCTTGGGATTACTTAAAGAGTTGGCATTTCGGAATGTAAGCTCAAACAAGCTTGAAGGTAGCATTCCAGGCTCATTACATGGTTGCCAAAGCTTGAAAGTCATAGACTTGAATGACAACAATCTATCTGGTGTTCTCCCTAAAGAACTCGGCTGGATGAAGAATCTAACATACTTGGCTCTCTCCGTAAACAATCTCAGCGGACTGCTTCCAGCCTCACTTTCAAACTTGACGGAATTGACAAAACTACAACTGGCCGTCAACTATTTTACTGGAAAAATCCCACCAGAGCTTGGAGCATTAAGAAAGCTAGAGATTTTGCATCTCCATACAAACTATCTCGAAGGCTCAATACCTGCAGTAATTGGTAACTGCACTGCTTTACGCGAAATCTCGCTGCTTGAGAATATGTTAAATGGAGAAATCCCTTCAGATATGTTTTCTAAACTCAAGAATATGCAGAAAATGTACATGTCAAACAACAAGCTTTCTGGGAGAATTCCAGTGACCCTCTCCAATCTTTCACAGCTGATACTGTTTGATGTTAGTCTGAATAATTTAGAGGGGGAAGTTCCTGCAGGATTGGGCAAGCTAGAGAACCTTGAGAATTTCTACTTACACACCAACAACTTGGGTGGCGGGTCTGGTAATTCTTCTATCAGTTTCTTGATTGCTCTAACTAACTGTTCATATCTGCAAAAACTACACTTGGGTTCGTGTTTGTTCACTGGAAATCTACCATCTTCAATAGGTGACCTTTCAAAAGACCTCTATTACTTGAATCTTTTTCATAACCACATTACAGGAAGTATACCAGATAGTATCGGAAACTTAAGCGGCCTGGTAACCTTGTACTTGTCATACAACAGTTTGGAAGGAAAAATTCCATCTTCTCTTGGCAAGCTTTCGAATTTGCAGAGGTTATACTTGAGGAACAACAGAATTATTGGGCCAATGCCAAAAGACTTGGGGATGATGCCTAACCTTGGTTTACTAGAACTTGGCAACAATTCGATTGGTGGGCCAATTCCGCCTTCACTTGATAATCTCTCACAGCTGAGATATCTTTACCTGTCTAGAAATCGCCTATCAGGAAAGTTTCCGATTGAGCTTACTCAATGTTCTCTTATCATGCTGCTTGATCTATCTTTCAACAACTTAAAAGGCTCTGTTCCTGTACAGATTGACCGTTTTTCCAATTTAGCTCTCTCTCTTAATCTTTCGAACAATAACTTCGAAGGACAGTTGCCTGCAAGCATTGGAAAGCTGGTAGATGTACAGGCAATTGACTTGTCTGACAACCAGTTTTCTGGGTCCATACCTACATTGATGGGAAGCTGCATATCTTTGGCGTATCTAAACATGTCCAACAACATATTTGAGGGGACTATTCCAGAGTCGTTGAAGCTGATCACTCAACTTGAAGTTTTGGACTTGTCACTTAATCGATTAAATGGCAGTATTCCAATATGGATTGCTAAAGCACAGATGATCAAGAATCTCAATTTATCTTATAACAGGTTATCAGGAGAAATTCCAGACACTGGGAGGATAAAATCTTTCAATAGAAGCTCATTCTTGGGGAATGTGGGGTTGTGTGGTGGTTCTGCACTACTTGGTCGTCCGCCATGCGTAGTTCAAAAGAGAAAATATACGATAAGAAAATCGATACTTTACTCTTTGGTTGCAGCAGTTGCAGTAGTCTGTGCTCTGGTTGCTGTCTTTGTTTATTGGTTCTTCTTCTTCAGAAAACGGGATTCAAAACCAGAACACCGTGAACACAGAATGCTAAGAGTAATGGGATCACCAAGCCATCATGGAAGTCGAATTTTCACCCAAAGGGAACTTGAAATTGCAACAGGTGAGTTCAATGAGGCTCATCTCCTAGGTAGAGGAACCAGCGGAGCAGTCTATAAAGCAGTAATTGACAATGGGGAAAATATCGTGGCAGTGAAGGTACTGCATGGTGATGGTAATCAGAGTTACAGAAGCTTCAAGAGGGAATGTCAAATCATGTCCGAAATTAAGCACCGGAATCTTGTAAGAATGGTAGGATATACCTGGAACAAACAGTTCAAGGCTCTTATTCTCGAGTATATTGACAATGGTAACTTAGCACAGCATCTTTATCCTGGTGAACTGGAGGAAGGAGCATGTGAATTATCGTTGAGGGATAGAATGTCAATAGCTATAGATGTTGCCAGTGGCTTGGAGTATCTTCAGGAAGGTTGTCCAGTCCAAATTATGCACTGTGATCTAAAACCAGAAAATGTGCTTATTGACAACAATATGGTGGCTCATGTAGCAGATTTCGGGATTGGGAAGCTCAACGCAGCTGAGAAATCCAACGAATCACATGTTAGCACAACACATTTTCTACGTGGATCAATTGGTTACATTCCCCCAGAATATGGACAAGGAATTGAGGTATCAGCAAAAGGAGACATCTATAGCTTCGGTGTCATGGTGCTTGAGATGATAACAAGAAGAAGACCGACAAGCAATATGTTTCCGGATGGGCTTGATCTAAGGAAGTGGGTGGTTTCTTCGTTCCCAGACCATGTTTGGGATGTTGTTGACAGTACATTAAAGGAGATACAAAGCACACATGGCGCTTTGGATGAGCTTGAGAAATGCTGCATTCAAATGCTTGATGTGGGGTTGATGTGCACAGAAGAGAATCCACAAGAAAGACCTGCTATGTCTTTTGTTGTGCAGAAGTTGAAACAGGTTATGAAAAGCTCCAATATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

1038

Amino Acids

114.87

Weight (kDa)

6.79

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	34 - 72	9.3e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	144 - 275	3.9e-10	Leucine-rich repeat region
LRR_8	PF13855	151 - 208	5.6e-06	Leucine rich repeat
LRR_8	PF13855	222 - 283	7.3e-06	Leucine rich repeat
LRR_14	PF23598	338 - 481	3.8e-12	Leucine-rich repeat region
LRR_8	PF13855	377 - 435	2.6e-09	Leucine rich repeat
Pkinase	PF00069	744 - 1024	7.3e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	747 - 1028	5.4e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38270
fragaria_vesca	FvH4_6g11240
malus_domestica	MD00G1172400.v1.1
prunus_persica	Prupe.6G279600_v2.0.a1
pyrus_communis	pycom12g16270
rosa_chinensis	RchiOBHm_Chr3g0462751
rosa_laevigata	RLG00000024835
rosa_multiflora	Rmu_co8134540.1_g000001 Rmu_sc0000766.1_g000004
rosa_roxburghii	Rroxscaffold_6G00417230
rosa_rugosa	Rorug03G0059000
rosa_samantha	Rh3AG117000 Rh3BG120700 Rh3CG123700 Rh3DG122400
rosa_wichuraiana	Rw3G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1875
Acc36I	ACCTGC	2 cut(s)	724, 3064
AccB7I	CCANNNNNTGG	3 cut(s)	653, 1904, 2771
AccI	GTMKAC	1 cut(s)	1171
AccII	CGCG	1 cut(s)	747
AccIII	TCCGGA	1 cut(s)	2872
AciI	CCGC	6 cut(s)	561, 999, 1197, 1391, 1985, 2262
AclWI	GGATC	3 cut(s)	143, 2170, 2752
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	8 cut(s)	125, 351, 858, 967, 1242, 1270, 1893, 2187
AcuI	CTGAAG	3 cut(s)	774, 2089, 2564
AfaI	GTAC	7 cut(s)	39, 830, 1214, 1539, 1638, 2319, 2944
AfiI	CCNNNNNNNGG	6 cut(s)	235, 653, 1346, 1904, 2771, 2926
AflII	CTTAAG	1 cut(s)	1192
AflIII	ACRYGT	3 cut(s)	831, 1722, 2716
AjnI	CCWGG	4 cut(s)	427, 1200, 2420, 2491
AjuI	GAANNNNNNNTTGG	2 cut(s)	1378, 1410
Alw21I	GWGCWC	2 cut(s)	2071, 3032
Alw26I	GTCTC	2 cut(s)	230, 2796
Alw44I	GTGCAC	1 cut(s)	3028
AlwI	GGATC	3 cut(s)	143, 2170, 2752
AlwNI	CAGNNNCTG	1 cut(s)	1904
Ama87I	CYCGRG	1 cut(s)	2450
Aor13HI	TCCGGA	1 cut(s)	2872
AoxI	GGCC	5 cut(s)	244, 615, 1198, 1310, 1382
ApaLI	GTGCAC	1 cut(s)	3028
ApeKI	GCWGC	6 cut(s)	757, 1495, 1698, 2048, 2693, 2997
ApoI	RAATTY	8 cut(s)	125, 351, 858, 967, 1242, 1270, 1893, 2187
AspA2I	CCTAGG	1 cut(s)	2245
AspLEI	GCGC	1 cut(s)	2975
AspS9I	GGNCC	3 cut(s)	1310, 1382, 1674
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	7 cut(s)	276, 1124, 2157, 2185, 2234, 2339, 2507
AsuII	TTCGAA	3 cut(s)	1268, 1583, 1596
AvaI	CYCGRG	1 cut(s)	2450
AvaII	GGWCC	1 cut(s)	1674
AvrII	CCTAGG	1 cut(s)	2245
BaeGI	GKGCMC	1 cut(s)	3032
BarI	GAAGNNNNNNTAC	2 cut(s)	696, 728
BbsI	GAAGAC	1 cut(s)	2857
Bbv12I	GWGCWC	2 cut(s)	2071, 3032
BbvI	GCAGC	6 cut(s)	744, 1482, 1685, 2060, 2705, 2984
BccI	CCATC	8 cut(s)	79, 364, 1108, 1255, 1684, 2181, 2324, 2870
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	4 cut(s)	429, 1202, 2422, 2493
BclI	TGATCA	2 cut(s)	1770, 1851
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	230, 2796
BfaI	CTAG	5 cut(s)	671, 953, 1355, 1437, 2246
BfmI	CTRYAG	4 cut(s)	717, 936, 2550, 2809
BfoI	RGCGCY	1 cut(s)	2976
BfrI	CTTAAG	1 cut(s)	1192
BfuAI	ACCTGC	2 cut(s)	724, 3064
BisI	GCNGC	7 cut(s)	758, 1198, 1496, 1699, 2049, 2694, 2998
BlnI	CCTAGG	1 cut(s)	2245
BlsI	GCNGC	7 cut(s)	759, 1199, 1497, 1700, 2050, 2695, 2999
Bme1390I	CCNGG	5 cut(s)	236, 429, 1202, 2422, 2493
Bme18I	GGWCC	1 cut(s)	1674
BmeT110I	CYCGRG	1 cut(s)	2450
BmgT120I	GGNCC	3 cut(s)	1310, 1382, 1674
BmiI	GGNNCC	3 cut(s)	341, 1675, 2257
BmrFI	CCNGG	5 cut(s)	236, 429, 1202, 2422, 2493
BmrI	ACTGGG	1 cut(s)	1914
BmsI	GCATC	3 cut(s)	691, 1326, 2491
BmuI	ACTGGG	1 cut(s)	1914
BpiI	GAAGAC	1 cut(s)	2857
BpmI	CTGGAG	1 cut(s)	2522
Bpu14I	TTCGAA	3 cut(s)	1268, 1583, 1596
BpuEI	CTTGAG	6 cut(s)	782, 794, 983, 1309, 2852, 3008
BpuMI	CCSGG	1 cut(s)	236
Bsa29I	ATCGAT	2 cut(s)	1807, 2027
BsaAI	YACGTR	1 cut(s)	2741
BsaBI	GATNNNNATC	1 cut(s)	2334
BsaJI	CCNNGG	4 cut(s)	343, 363, 1345, 2245
BsaWI	WCCGGW	2 cut(s)	2391, 2872
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 653, 1346, 1904, 2771, 2926
Bse3DI	GCAATG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	2334
BseAI	TCCGGA	1 cut(s)	2872
BseBI	CCWGG	4 cut(s)	429, 1202, 2422, 2493
BseCI	ATCGAT	2 cut(s)	1807, 2027
BseDI	CCNNGG	4 cut(s)	343, 363, 1345, 2245
BseGI	GGATG	5 cut(s)	522, 1338, 2881, 2935, 2986
BseJI	GATNNNNATC	1 cut(s)	2334
BseLI	CCNNNNNNNGG	6 cut(s)	235, 653, 1346, 1904, 2771, 2926
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	3 cut(s)	571, 1409, 2688
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	3032
BseXI	GCAGC	6 cut(s)	744, 1482, 1685, 2060, 2705, 2984
BsgI	GTGCAG	3 cut(s)	718, 1953, 3095
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	5 cut(s)	246, 617, 1200, 1312, 1384
BshVI	ATCGAT	2 cut(s)	1807, 2027
BsiHKAI	GWGCWC	2 cut(s)	2071, 3032
BsiHKCI	CYCGRG	1 cut(s)	2450
BsiSI	CCGG	3 cut(s)	235, 2392, 2873
BslFI	GGGAC	1 cut(s)	1759
BslI	CCNNNNNNNGG	6 cut(s)	235, 653, 1346, 1904, 2771, 2926
BsmAI	GTCTC	2 cut(s)	230, 2796
BsmFI	GGGAC	1 cut(s)	1759
BsmI	GAATGC	3 cut(s)	423, 2151, 3000
BsnI	GGCC	5 cut(s)	246, 617, 1200, 1312, 1384
BsoBI	CYCGRG	1 cut(s)	2450
Bsp119I	TTCGAA	3 cut(s)	1268, 1583, 1596
Bsp1286I	GDGCHC	2 cut(s)	2071, 3032
Bsp13I	TCCGGA	1 cut(s)	2872
Bsp1407I	TGTACA	3 cut(s)	828, 1537, 1636
Bsp143I	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	6 cut(s)	561, 999, 1197, 1391, 1985, 2262
BspANI	GGCC	5 cut(s)	246, 617, 1200, 1312, 1384
BspCNI	CTCAG	3 cut(s)	570, 1410, 2689
BspDI	ATCGAT	2 cut(s)	1807, 2027
BspEI	TCCGGA	1 cut(s)	2872
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	3 cut(s)	341, 1675, 2257
BspMAI	CTGCAG	2 cut(s)	721, 940
BspMI	ACCTGC	2 cut(s)	724, 3064
BspPI	GGATC	3 cut(s)	143, 2170, 2752
BspT104I	TTCGAA	3 cut(s)	1268, 1583, 1596
BspTI	CTTAAG	1 cut(s)	1192
BsrDI	GCAATG	1 cut(s)	340
BsrGI	TGTACA	3 cut(s)	828, 1537, 1636
BssECI	CCNNGG	4 cut(s)	343, 363, 1345, 2245
BssMI	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
BssNAI	GTATAC	1 cut(s)	1172
BssT1I	CCWWGG	4 cut(s)	343, 363, 1345, 2245
Bst1107I	GTATAC	1 cut(s)	1172
Bst2UI	CCWGG	4 cut(s)	429, 1202, 2422, 2493
Bst4CI	ACNGT	9 cut(s)	897, 1046, 1229, 1550, 1605, 2135, 2433, 2612, 2942
Bst6I	CTCTTC	2 cut(s)	312, 3030
BstAFI	CTTAAG	1 cut(s)	1192
BstAPI	GCANNNNNTGC	1 cut(s)	2054
BstAUI	TGTACA	3 cut(s)	828, 1537, 1636
BstBAI	YACGTR	1 cut(s)	2741
BstBI	TTCGAA	3 cut(s)	1268, 1583, 1596
BstC8I	GCNNGC	5 cut(s)	269, 950, 1262, 1611, 1615
BstDEI	CTNAG	7 cut(s)	75, 557, 1418, 2150, 2473, 2697, 2888
BstDSI	CCRYGG	1 cut(s)	343
BstEII	GGTNACC	2 cut(s)	1112, 1204
BstF5I	GGATG	5 cut(s)	522, 1338, 2881, 2935, 2986
BstFNI	CGCG	1 cut(s)	747
BstH2I	RGCGCY	1 cut(s)	2976
BstHHI	GCGC	1 cut(s)	2975
BstKTI	GATC	8 cut(s)	151, 1504, 1773, 1854, 2165, 2617, 2747, 2887
BstMAI	GTCTC	2 cut(s)	230, 2796
BstMBI	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
BstMWI	GCNNNNNNNGC	6 cut(s)	429, 1390, 2054, 2075, 2663, 2970
BstNI	CCWGG	4 cut(s)	429, 1202, 2422, 2493
BstNSI	RCATGY	5 cut(s)	216, 835, 1726, 2517, 2720
BstPI	GGTNACC	2 cut(s)	1112, 1204
BstSCI	CCNGG	5 cut(s)	234, 427, 1200, 2420, 2491
BstSFI	CTRYAG	4 cut(s)	717, 936, 2550, 2809
BstSLI	GKGCMC	1 cut(s)	3032
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	6 cut(s)	744, 1482, 1685, 2060, 2705, 2984
BstV2I	GAAGAC	1 cut(s)	2857
BstXI	CCANNNNNNTGG	3 cut(s)	991, 1670, 2569
BstZ17I	GTATAC	1 cut(s)	1172
Bsu15I	ATCGAT	2 cut(s)	1807, 2027
BsuRI	GGCC	5 cut(s)	246, 617, 1200, 1312, 1384
BsuTUI	ATCGAT	2 cut(s)	1807, 2027
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	5 cut(s)	522, 1338, 2881, 2935, 2986
BtsI	GCAGTG	2 cut(s)	735, 2316
BtsIMutI	CAGTG	8 cut(s)	109, 735, 870, 1086, 1902, 2316, 2569, 2608
BveI	ACCTGC	2 cut(s)	724, 3064
Cac8I	GCNNGC	5 cut(s)	269, 950, 1262, 1611, 1615
CaiI	CAGNNNCTG	1 cut(s)	1904
CfoI	GCGC	1 cut(s)	2975
Cfr13I	GGNCC	3 cut(s)	1310, 1382, 1674
ClaI	ATCGAT	2 cut(s)	1807, 2027
Csp6I	GTAC	7 cut(s)	38, 829, 1213, 1538, 1637, 2318, 2943
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviQI	GTAC	7 cut(s)	38, 829, 1213, 1538, 1637, 2318, 2943
DdeI	CTNAG	7 cut(s)	75, 557, 1418, 2150, 2473, 2697, 2888
DpnI	GATC	8 cut(s)	150, 1503, 1772, 1853, 2164, 2616, 2746, 2886
DpnII	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	312, 3030
EarI	CTCTTC	2 cut(s)	312, 3030
EciI	GGCGGA	2 cut(s)	1380, 1974
Eco130I	CCWWGG	4 cut(s)	343, 363, 1345, 2245
Eco147I	AGGCCT	1 cut(s)	246
Eco32I	GATATC	2 cut(s)	282, 1424
Eco47I	GGWCC	1 cut(s)	1674
Eco57I	CTGAAG	3 cut(s)	774, 2089, 2564
Eco88I	CYCGRG	1 cut(s)	2450
Eco91I	GGTNACC	2 cut(s)	1112, 1204
EcoO65I	GGTNACC	2 cut(s)	1112, 1204
EcoRI	GAATTC	1 cut(s)	858
EcoRII	CCWGG	4 cut(s)	427, 1200, 2420, 2491
EcoRV	GATATC	2 cut(s)	282, 1424
EcoT14I	CCWWGG	4 cut(s)	343, 363, 1345, 2245
ErhI	CCWWGG	4 cut(s)	343, 363, 1345, 2245
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	1759
FauI	CCCGC	1 cut(s)	992
FbaI	TGATCA	2 cut(s)	1770, 1851
FblI	GTMKAC	1 cut(s)	1171
Fnu4HI	GCNGC	7 cut(s)	758, 1198, 1496, 1699, 2049, 2694, 2998
FokI	GGATG	5 cut(s)	529, 1345, 2888, 2942, 2993
Fsp4HI	GCNGC	7 cut(s)	758, 1198, 1496, 1699, 2049, 2694, 2998
FspBI	CTAG	5 cut(s)	671, 953, 1355, 1437, 2246
GlaI	GCGC	1 cut(s)	2974
GluI	GCNGC	7 cut(s)	758, 1198, 1496, 1699, 2049, 2694, 2998
GsuI	CTGGAG	1 cut(s)	2522
HaeII	RGCGCY	1 cut(s)	2976
HaeIII	GGCC	5 cut(s)	246, 617, 1200, 1312, 1384
HapII	CCGG	3 cut(s)	235, 2392, 2873
HhaI	GCGC	1 cut(s)	2975
Hin6I	GCGC	1 cut(s)	2973
HinP1I	GCGC	1 cut(s)	2973
HincII	GTYRAC	2 cut(s)	622, 2938
HindII	GTYRAC	2 cut(s)	622, 2938
HindIII	AAGCTT	5 cut(s)	410, 451, 845, 1262, 2350
HinfI	GANTC	9 cut(s)	98, 523, 1141, 1757, 1858, 2117, 2395, 2711, 3040
HpaII	CCGG	3 cut(s)	235, 2392, 2873
HphI	GGTGA	7 cut(s)	276, 1124, 2157, 2185, 2234, 2339, 2507
Hpy166II	GTNNAC	9 cut(s)	550, 622, 1086, 1172, 1352, 2138, 2498, 2938, 3030
Hpy8I	GTNNAC	9 cut(s)	550, 622, 1086, 1172, 1352, 2138, 2498, 2938, 3030
HpyCH4III	ACNGT	9 cut(s)	897, 1046, 1229, 1550, 1605, 2135, 2433, 2612, 2942
HpyCH4IV	ACGT	1 cut(s)	2740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	429, 1390, 2054, 2075, 2663, 2970
HpyF3I	CTNAG	7 cut(s)	75, 557, 1418, 2150, 2473, 2697, 2888
HpySE526I	ACGT	1 cut(s)	2740
HspAI	GCGC	1 cut(s)	2973
Kpn2I	TCCGGA	1 cut(s)	2872
Ksp22I	TGATCA	2 cut(s)	1770, 1851
Kzo9I	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
LmnI	GCTCC	5 cut(s)	136, 656, 2264, 2510, 3107
Lsp1109I	GCAGC	6 cut(s)	744, 1482, 1685, 2060, 2705, 2984
LweI	GCATC	3 cut(s)	691, 1326, 2491
MaeI	CTAG	5 cut(s)	671, 953, 1355, 1437, 2246
MaeII	ACGT	1 cut(s)	2740
MaeIII	GTNAC	8 cut(s)	728, 865, 1112, 1204, 1797, 2342, 2468, 2753
MalI	GATC	8 cut(s)	150, 1503, 1772, 1853, 2164, 2616, 2746, 2886
MboI	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
MfeI	CAATTG	2 cut(s)	1644, 2748
MhlI	GDGCHC	2 cut(s)	2071, 3032
MlyI	GAGTC	1 cut(s)	1766
MmeI	TCCRAC	3 cut(s)	321, 1752, 2730
MroI	TCCGGA	1 cut(s)	2872
MslI	CAYNNNNRTG	2 cut(s)	2328, 3005
MspA1I	CMGCKG	5 cut(s)	561, 889, 1417, 2262, 2696
MspCI	CTTAAG	1 cut(s)	1192
MspI	CCGG	3 cut(s)	235, 2392, 2873
MspR9I	CCNGG	5 cut(s)	236, 429, 1202, 2422, 2493
MunI	CAATTG	2 cut(s)	1644, 2748
Mva1269I	GAATGC	3 cut(s)	423, 2151, 3000
MvaI	CCWGG	4 cut(s)	429, 1202, 2422, 2493
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	6 cut(s)	429, 1390, 2054, 2075, 2663, 2970
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
NlaIV	GGNNCC	3 cut(s)	341, 1675, 2257
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	3 cut(s)	865, 1112, 1797
NspI	RCATGY	5 cut(s)	216, 835, 1726, 2517, 2720
NspV	TTCGAA	3 cut(s)	1268, 1583, 1596
PaeR7I	CTCGAG	1 cut(s)	2450
PceI	AGGCCT	1 cut(s)	246
PciI	ACATGT	3 cut(s)	831, 1722, 2716
PctI	GAATGC	3 cut(s)	423, 2151, 3000
PfeI	GAWTC	8 cut(s)	98, 523, 1141, 1858, 2117, 2395, 2711, 3040
PflMI	CCANNNNNTGG	3 cut(s)	653, 1904, 2771
PkrI	GCNGC	7 cut(s)	759, 1199, 1497, 1700, 2050, 2695, 2999
PleI	GAGTC	1 cut(s)	1765
PpsI	GAGTC	1 cut(s)	1765
Ppu21I	YACGTR	1 cut(s)	2741
PscI	ACATGT	3 cut(s)	831, 1722, 2716
PsiI	TTATAA	1 cut(s)	1875
Psp6I	CCWGG	4 cut(s)	427, 1200, 2420, 2491
PspEI	GGTNACC	2 cut(s)	1112, 1204
PspGI	CCWGG	4 cut(s)	427, 1200, 2420, 2491
PspN4I	GGNNCC	3 cut(s)	341, 1675, 2257
PspPI	GGNCC	3 cut(s)	1310, 1382, 1674
PstI	CTGCAG	2 cut(s)	721, 940
PstNI	CAGNNNCTG	1 cut(s)	1904
PvuII	CAGCTG	3 cut(s)	889, 1417, 2696
RsaI	GTAC	7 cut(s)	39, 830, 1214, 1539, 1638, 2319, 2944
RsaNI	GTAC	7 cut(s)	38, 829, 1213, 1538, 1637, 2318, 2943
RseI	CAYNNNNRTG	2 cut(s)	2328, 3005
SatI	GCNGC	7 cut(s)	758, 1198, 1496, 1699, 2049, 2694, 2998
Sau3AI	GATC	8 cut(s)	148, 1501, 1770, 1851, 2162, 2614, 2744, 2884
Sau96I	GGNCC	3 cut(s)	1310, 1382, 1674
SbfI	CCTGCAGG	1 cut(s)	940
SchI	GAGTC	1 cut(s)	1766
ScrFI	CCNGG	5 cut(s)	236, 429, 1202, 2422, 2493
SdaI	CCTGCAGG	1 cut(s)	940
SduI	GDGCHC	2 cut(s)	2071, 3032
SfaNI	GCATC	3 cut(s)	691, 1326, 2491
SfcI	CTRYAG	4 cut(s)	717, 936, 2550, 2809
Sfr274I	CTCGAG	1 cut(s)	2450
SfuI	TTCGAA	3 cut(s)	1268, 1583, 1596
SinI	GGWCC	1 cut(s)	1674
SlaI	CTCGAG	1 cut(s)	2450
SmiMI	CAYNNNNRTG	2 cut(s)	2328, 3005
SmlI	CTYRAG	8 cut(s)	761, 809, 962, 1192, 1288, 2450, 2831, 2987
SmoI	CTYRAG	8 cut(s)	761, 809, 962, 1192, 1288, 2450, 2831, 2987
Sse8387I	CCTGCAGG	1 cut(s)	940
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	6 cut(s)	561, 999, 1197, 1391, 1985, 2262
SspMI	CTAG	5 cut(s)	671, 953, 1355, 1437, 2246
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	5 cut(s)	234, 427, 1200, 2420, 2491
StyI	CCWWGG	4 cut(s)	343, 363, 1345, 2245
TaaI	ACNGT	9 cut(s)	897, 1046, 1229, 1550, 1605, 2135, 2433, 2612, 2942
TaiI	ACGT	1 cut(s)	2743
TaqI	TCGA	9 cut(s)	702, 1268, 1373, 1583, 1596, 1807, 2027, 2185, 2451
TaqII	GACCGA	1 cut(s)	2869
TatI	WGTACW	5 cut(s)	828, 1212, 1537, 1636, 2942
TauI	GCSGC	1 cut(s)	1200
TfiI	GAWTC	8 cut(s)	98, 523, 1141, 1858, 2117, 2395, 2711, 3040
TscAI	CASTG	8 cut(s)	109, 742, 870, 1093, 1909, 2316, 2569, 2615
TseFI	GTSAC	3 cut(s)	865, 1112, 1797
TseI	GCWGC	6 cut(s)	757, 1495, 1698, 2048, 2693, 2997
Tsp45I	GTSAC	3 cut(s)	865, 1112, 1797
TspDTI	ATGAA	6 cut(s)	43, 280, 533, 1038, 1139, 3110
TspGWI	ACGGA	2 cut(s)	535, 608
TspRI	CASTG	8 cut(s)	109, 742, 870, 1093, 1909, 2316, 2569, 2615
Van91I	CCANNNNNTGG	3 cut(s)	653, 1904, 2771
Vha464I	CTTAAG	1 cut(s)	1192
VneI	GTGCAC	1 cut(s)	3028
VpaK11BI	GGWCC	1 cut(s)	1674
XapI	RAATTY	8 cut(s)	125, 351, 858, 967, 1242, 1270, 1893, 2187
XbaI	TCTAGA	1 cut(s)	1436
XceI	RCATGY	5 cut(s)	216, 835, 1726, 2517, 2720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2922
XhoI	CTCGAG	1 cut(s)	2450
XmaJI	CCTAGG	1 cut(s)	2245
XmiI	GTMKAC	1 cut(s)	1171
XspI	CTAG	5 cut(s)	671, 953, 1355, 1437, 2246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.