AT2G38300
MYB Family

Two-component response regulator ARR18-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013953
Physical Location & Seq
Reverse (-)
16043948 .. 16046015
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38300.1

Sequence Viewer

Length: 1023 bp
ATGATTCCAAGTATGGAGGGAGGCGGGAAGACTAACAGAGAAGAAGAGGAGGAGGAAGAGGAAGAAGAAGAAGAAGGTGAAGAGAGTAAGGTTTCAAGCAATAGTACAGTGGAAGAGAGCGACAAGAAGACTAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGACTCCGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCCGTTGAGAGGCTTGGAGGTCAAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTGCTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAGCTATAGCTGGTCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAAGTCAGCTACCGATGTTCCGAGGCTATAATCATAACCATGATTCTCCATTCAGATATGGAAGTAAAATTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCAAGGAACAGAAAGGAGTTTGATAGACCAAATTAGGCCCGGTTTAATCCGCAACGCGTCGGTTAGCAATAACATCCGTGGTAGTGATTATTGGACTAACAACAAGTCTTTCCAAAACATCTACTCTTCTTCAATTTCTAATCACTTTCCGAAACTACGACACGATCATCACGAACGGACCAATTCAGTCACATTCAACAGCATTCAAGGACACTCAAGAACTTTTCAAAAGTTCCATAACGGTGTTGAGGAGAACACTAATCATTCTTATTGTAGCAAGACAAATGGCAAAAGAGACGCAAGTAGGAGCATTGATCTTGATCTATCTCTTAAGCTAAGACAACCGGAGAAGACAATTTTGGAAGAGACAGAAACAGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTGGAAAAAGAGCCGACTGATGAAAGATGAAGAGGATCGGACGGTTAAGATTGGTCAGGAGAGTACTCTGGATCTGACTCTATGA

Protein Analysis

340

Amino Acids

38.92

Weight (kDa)

8.85

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 56 - 107 4.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AccII CGCG 2 cut(s) 207, 563
AciI CCGC 3 cut(s) 24, 205, 556
AclI AACGTT 1 cut(s) 905
AclWI GGATC 3 cut(s) 906, 981, 1017
AcsI RAATTY 1 cut(s) 474
AfaI GTAC 3 cut(s) 106, 317, 1003
AfiI CCNNNNNNNGG 1 cut(s) 216
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 6 cut(s) 96, 480, 639, 703, 713, 734
AjnI CCWGG 1 cut(s) 925
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 5 cut(s) 350, 356, 415, 504, 841
AluI AGCT 5 cut(s) 350, 356, 415, 504, 841
Alw26I GTCTC 3 cut(s) 371, 795, 866
AlwI GGATC 3 cut(s) 906, 981, 1017
AoxI GGCC 2 cut(s) 140, 542
ApeKI GCWGC 1 cut(s) 884
ApoI RAATTY 1 cut(s) 474
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 543, 684
AsuC2I CCSGG 1 cut(s) 546
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 684
BbsI GAAGAC 4 cut(s) 35, 134, 863, 927
BbvI GCAGC 1 cut(s) 896
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 927
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 546
BcoDI GTCTC 3 cut(s) 371, 795, 866
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 2 cut(s) 308, 351
BfrI CTTAAG 1 cut(s) 836
BglII AGATCT 1 cut(s) 152
BisI GCNGC 1 cut(s) 885
BlsI GCNGC 1 cut(s) 886
BmcAI AGTACT 1 cut(s) 1003
Bme1390I CCNGG 2 cut(s) 546, 927
Bme18I GGWCC 1 cut(s) 684
BmgT120I GGNCC 2 cut(s) 543, 684
BmrFI CCNGG 2 cut(s) 546, 927
BpiI GAAGAC 4 cut(s) 35, 134, 863, 927
BpuEI CTTGAG 2 cut(s) 492, 706
BpuMI CCSGG 1 cut(s) 546
BsaBI GATNNNNATC 3 cut(s) 189, 269, 825
BsaJI CCNNGG 3 cut(s) 427, 583, 926
BsaWI WCCGGW 2 cut(s) 171, 850
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse8I GATNNNNATC 3 cut(s) 189, 269, 825
BseBI CCWGG 1 cut(s) 927
BseDI CCNNGG 3 cut(s) 427, 583, 926
BseGI GGATG 1 cut(s) 579
BseJI GATNNNNATC 3 cut(s) 189, 269, 825
BseLI CCNNNNNNNGG 1 cut(s) 216
BseRI GAGGAG 3 cut(s) 62, 65, 770
BseXI GCAGC 1 cut(s) 896
Bsh1236I CGCG 2 cut(s) 207, 563
BshFI GGCC 2 cut(s) 142, 544
BsiSI CCGG 3 cut(s) 172, 546, 851
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 3 cut(s) 371, 795, 866
BsmBI CGTCTC 1 cut(s) 795
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 2 cut(s) 142, 544
Bsp1407I TGTACA 1 cut(s) 315
BspACI CCGC 3 cut(s) 24, 205, 556
BspANI GGCC 2 cut(s) 142, 544
BspFNI CGCG 2 cut(s) 207, 563
BspPI GGATC 3 cut(s) 906, 981, 1017
BspTI CTTAAG 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 427, 583, 926
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 3 cut(s) 109, 749, 982
Bst6I CTCTTC 8 cut(s) 39, 51, 75, 108, 377, 637, 864, 963
BstAFI CTTAAG 1 cut(s) 836
BstAUI TGTACA 1 cut(s) 315
BstDEI CTNAG 4 cut(s) 132, 281, 407, 842
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 1 cut(s) 579
BstFNI CGCG 2 cut(s) 207, 563
BstHHI GCGC 1 cut(s) 209
BstMAI GTCTC 3 cut(s) 371, 795, 866
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 927
BstSCI CCNGG 2 cut(s) 544, 925
BstSFI CTRYAG 2 cut(s) 308, 351
BstUI CGCG 2 cut(s) 207, 563
BstV1I GCAGC 1 cut(s) 896
BstV2I GAAGAC 4 cut(s) 35, 134, 863, 927
BstX2I RGATCY 2 cut(s) 152, 1009
BstYI RGATCY 2 cut(s) 152, 1009
BsuRI GGCC 2 cut(s) 142, 544
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 114
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 543, 684
CseI GACGC 2 cut(s) 552, 812
Csp6I GTAC 3 cut(s) 105, 316, 1002
CviAII CATG 2 cut(s) 293, 446
CviQI GTAC 3 cut(s) 105, 316, 1002
DdeI CTNAG 4 cut(s) 132, 281, 407, 842
Eam1104I CTCTTC 8 cut(s) 39, 51, 75, 108, 377, 637, 864, 963
EarI CTCTTC 8 cut(s) 39, 51, 75, 108, 377, 637, 864, 963
Eco147I AGGCCT 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 795
FaeI CATG 2 cut(s) 296, 449
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 292, 445
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 885
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 1 cut(s) 885
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 885
HaeIII GGCC 2 cut(s) 142, 544
HapII CCGG 3 cut(s) 172, 546, 851
HgaI GACGC 2 cut(s) 552, 812
HhaI GCGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 296, 449
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 5 cut(s) 4, 168, 178, 449, 1015
HpaII CCGG 3 cut(s) 172, 546, 851
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 6 cut(s) 261, 428, 461, 657, 978, 1014
Hpy188III TCNNGA 9 cut(s) 182, 230, 298, 376, 677, 723, 824, 995, 1007
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 3 cut(s) 109, 749, 982
HpyCH4IV ACGT 1 cut(s) 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 4 cut(s) 132, 281, 407, 842
HpySE526I ACGT 1 cut(s) 905
Hsp92II CATG 2 cut(s) 296, 449
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 337
LmnI GCTCC 1 cut(s) 813
LpnPI CCDG 9 cut(s) 185, 195, 342, 559, 864, 912, 939, 980, 992
Lsp1109I GCAGC 1 cut(s) 896
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 905
MaeIII GTNAC 2 cut(s) 359, 694
MflI RGATCY 2 cut(s) 152, 1009
MluCI AATT 5 cut(s) 474, 537, 639, 688, 861
MluI ACGCGT 1 cut(s) 561
MlyI GAGTC 3 cut(s) 162, 172, 1009
MseI TTAA 3 cut(s) 551, 837, 984
MslI CAYNNNNRTG 2 cut(s) 444, 747
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 3 cut(s) 172, 546, 851
MspR9I CCNGG 2 cut(s) 546, 927
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 927
MvnI CGCG 2 cut(s) 207, 563
MwoI GCNNNNNNNGC 1 cut(s) 204
NciI CCSGG 1 cut(s) 546
NlaIII CATG 2 cut(s) 296, 449
NmuCI GTSAC 2 cut(s) 359, 694
PceI AGGCCT 1 cut(s) 142
PcsI WCGNNNNNNNCGW 2 cut(s) 675, 902
PctI GAATGC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 4, 449
PkrI GCNGC 1 cut(s) 886
PleI GAGTC 3 cut(s) 162, 172, 1009
PpsI GAGTC 3 cut(s) 162, 172, 1009
PsiI TTATAA 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 905
Psp6I CCWGG 1 cut(s) 925
PspGI CCWGG 1 cut(s) 925
PspPI GGNCC 2 cut(s) 543, 684
PsuI RGATCY 2 cut(s) 152, 1009
RsaI GTAC 3 cut(s) 106, 317, 1003
RsaNI GTAC 3 cut(s) 105, 316, 1002
RseI CAYNNNNRTG 2 cut(s) 444, 747
SaqAI TTAA 3 cut(s) 551, 837, 984
SatI GCNGC 1 cut(s) 885
Sau96I GGNCC 2 cut(s) 543, 684
ScaI AGTACT 1 cut(s) 1003
SchI GAGTC 3 cut(s) 162, 172, 1009
ScrFI CCNGG 2 cut(s) 546, 927
SfcI CTRYAG 2 cut(s) 308, 351
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 444, 747
SmlI CTYRAG 3 cut(s) 507, 721, 836
SmoI CTYRAG 3 cut(s) 507, 721, 836
Sse9I AATT 5 cut(s) 474, 537, 639, 688, 861
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 3 cut(s) 24, 205, 556
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 501
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 544, 925
TaaI ACNGT 3 cut(s) 109, 749, 982
TaiI ACGT 1 cut(s) 908
TaqI TCGA 3 cut(s) 166, 375, 391
TasI AATT 5 cut(s) 474, 537, 639, 688, 861
TatI WGTACW 3 cut(s) 104, 315, 1001
TfiI GAWTC 2 cut(s) 4, 449
Tru1I TTAA 3 cut(s) 551, 837, 984
Tru9I TTAA 3 cut(s) 551, 837, 984
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 2 cut(s) 359, 694
TseI GCWGC 1 cut(s) 884
Tsp45I GTSAC 2 cut(s) 359, 694
TspDTI ATGAA 4 cut(s) 179, 281, 974, 981
TspGWI ACGGA 3 cut(s) 572, 697, 911
TspRI CASTG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 684
XapI RAATTY 1 cut(s) 474
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.