Prupe.6G282300_v2.0.a1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013953
Physical Location & Seq
Reverse (-)
26321835 .. 26324029
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G282300.1

Sequence Viewer

Length: 1020 bp
ATGGAGGGCGACTCCGATTCCTCGAAAACAAGTCCCTCTGGTGAACAAACTGAGGGTGGAAGCGAGAGCGGGGAGAATTACGATGATATTGAAGAAAGTGGTAAGCCAAAAAACAATGGAGGAAGCTCAAGCAACAGCACAGTTGAAGAGAGTGATCAAAGGAAGGCCTCAGTTCGACCCTATGTTAGATCCAAGATGCCTAGGCTCCGATGGACACCGGATCTTCATCTCCGTTTCATCCACGCCGTGGAGAGGCTTGGTGGTCAAGAGAGAGCTACACCGAAGTTGGTTCTTCAACTGATGAACATTAAGGGACTAAGTATTGCGCATGTCAAGAGCCATTTACAGATGTATAGAAGCAAGAAGATCGACGACGCAGGCCAAGTTCTGGCGGATCATCAAGGCCATCTTGTTGAATGTGGAGATAAAAATATTTATAACCTCAGCCAACTTCCCATGCTTCAAGGATATAACCGAAGCCACAGTACCAGCTTCAGATATGGAGATGCCAAATCTTGGACCGCTTACGAAAACCCAAGGTACCCGAGAAGCAGTGGATTTCAAGGCAACTGGAGTTCAAGTAGTGCTTACAATTATCTGACAAGTTGTTCATTTGGTGAACAATCTTCTTGGATTGCTCGAACACTGAAACAAGAATGCCAATTATATAATATCCGCGAGTCCTTGCAAGCTCAGCACCAACATCAAGCCAGGTTGAGCCAGCAGCTGATTGATCTTAACCCCACAAATACCCATGTCCAAGTGCAACCCAAGCCAAAGGAACTCATCACAAGTTTCAACAACAGCAACAATCTAGAGCTCACGTCAAAGAAGAATGAGGATCATCAGTCGAAATCGTTGAAAAGGACAGCTTCGGATTGCGAAGATCTCGATTTGGATCTGTCTCTCAGGCTAACATCAAGGAACAAGAATGAAGATGATATTCATGAAGTTGATAGTAGTCTGTCTTTGTCTTTGTACTCACCCCCAACCTCAAAGCTCAGCAGGTTGAAGGAATGA

Protein Analysis

340

Amino Acids

38.24

Weight (kDa)

6.87

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
Acc16I TGCGCA 1 cut(s) 327
Acc36I ACCTGC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 540
AccB7I CCANNNNNTGG 3 cut(s) 247, 388, 516
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 678
AciI CCGC 4 cut(s) 69, 392, 522, 676
AclWI GGATC 5 cut(s) 183, 228, 402, 849, 906
AcuI CTGAAG 1 cut(s) 478
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 3 cut(s) 487, 542, 980
AfiI CCNNNNNNNGG 4 cut(s) 247, 252, 388, 516
AjiI CACGTC 1 cut(s) 825
AjnI CCWGG 1 cut(s) 710
AluBI AGCT 8 cut(s) 126, 275, 492, 692, 727, 820, 872, 1000
AluI AGCT 8 cut(s) 126, 275, 492, 692, 727, 820, 872, 1000
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 5 cut(s) 183, 228, 402, 849, 906
AlwNI CAGNNNCTG 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 3 cut(s) 165, 379, 403
ApeKI GCWGC 1 cut(s) 724
Asp718I GGTACC 1 cut(s) 540
AspA2I CCTAGG 1 cut(s) 200
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 53, 629, 975
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 519
AvrII CCTAGG 1 cut(s) 200
BanI GGYRCC 1 cut(s) 540
BanII GRGCYC 1 cut(s) 822
BarI GAAGNNNNNNTAC 2 cut(s) 469, 501
Bbv12I GWGCWC 1 cut(s) 822
BbvCI CCTCAGC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 736
BccI CCATC 2 cut(s) 204, 414
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 1 cut(s) 712
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 2 cut(s) 201, 815
BfuAI ACCTGC 1 cut(s) 996
BglII AGATCT 1 cut(s) 886
BisI GCNGC 1 cut(s) 725
BlnI CCTAGG 1 cut(s) 200
BlpI GCTNAGC 2 cut(s) 693, 1001
BlsI GCNGC 1 cut(s) 726
Bme1390I CCNGG 1 cut(s) 712
Bme18I GGWCC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 2 cut(s) 206, 542
BmrFI CCNGG 1 cut(s) 712
BmsI GCATC 2 cut(s) 186, 496
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 592
Bpu10I CCTNAGC 1 cut(s) 443
Bpu1102I GCTNAGC 2 cut(s) 693, 1001
BpuEI CTTGAG 1 cut(s) 112
BsaBI GATNNNNATC 2 cut(s) 225, 897
BsaJI CCNNGG 3 cut(s) 200, 246, 536
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 252, 388, 516
Bse1I ACTGG 1 cut(s) 575
Bse8I GATNNNNATC 2 cut(s) 225, 897
BseBI CCWGG 1 cut(s) 712
BseDI CCNNGG 3 cut(s) 200, 246, 536
BseGI GGATG 1 cut(s) 237
BseJI GATNNNNATC 2 cut(s) 225, 897
BseLI CCNNNNNNNGG 4 cut(s) 247, 252, 388, 516
BseMII CTCAG 6 cut(s) 42, 183, 457, 707, 922, 1015
BseNI ACTGG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 736
Bsh1236I CGCG 1 cut(s) 678
BshFI GGCC 3 cut(s) 167, 381, 405
BshNI GGYRCC 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 2 cut(s) 18, 327
BslI CCNNNNNNNGG 4 cut(s) 247, 252, 388, 516
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 2 cut(s) 18, 327
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 3 cut(s) 167, 381, 405
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 822
Bsp143I GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
Bsp1720I GCTNAGC 2 cut(s) 693, 1001
BspACI CCGC 4 cut(s) 69, 392, 522, 676
BspANI GGCC 3 cut(s) 167, 381, 405
BspCNI CTCAG 6 cut(s) 43, 182, 456, 706, 921, 1014
BspFNI CGCG 1 cut(s) 678
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 2 cut(s) 206, 542
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 5 cut(s) 183, 228, 402, 849, 906
BspT107I GGYRCC 1 cut(s) 540
BsrBI CCGCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 200, 246, 536
BssMI GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
BssT1I CCWWGG 2 cut(s) 200, 536
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 2 cut(s) 142, 485
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 379, 690, 722
BstDEI CTNAG 7 cut(s) 51, 169, 317, 443, 693, 908, 1001
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 678
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 9 cut(s) 157, 191, 223, 369, 397, 736, 844, 889, 901
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
BstMWI GCNNNNNNNGC 2 cut(s) 694, 772
BstNI CCWGG 1 cut(s) 712
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 710
BstUI CGCG 1 cut(s) 678
BstV1I GCAGC 1 cut(s) 736
BstX2I RGATCY 4 cut(s) 188, 220, 886, 898
BstYI RGATCY 4 cut(s) 188, 220, 886, 898
BsuRI GGCC 3 cut(s) 167, 381, 405
BtgI CCRYGG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 825
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 559, 644
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 3 cut(s) 379, 690, 722
CaiI CAGNNNCTG 1 cut(s) 727
CciI TCATGA 1 cut(s) 946
CfoI GCGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 519
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 486, 541, 979
CviAII CATG 4 cut(s) 329, 457, 755, 947
CviQI GTAC 3 cut(s) 486, 541, 979
DdeI CTNAG 7 cut(s) 51, 169, 317, 443, 693, 908, 1001
DpnI GATC 9 cut(s) 156, 190, 222, 368, 396, 735, 843, 888, 900
DpnII GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
DraIII CACNNNGTG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 2 cut(s) 200, 536
Eco147I AGGCCT 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 822
Eco47I GGWCC 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 200, 536
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 200, 536
FaeI CATG 4 cut(s) 332, 460, 758, 950
FalI AAGNNNNNCTT 6 cut(s) 393, 425, 571, 603, 856, 888
FaqI GGGAC 2 cut(s) 18, 327
FatI CATG 4 cut(s) 328, 456, 754, 946
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 725
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 1 cut(s) 725
FspBI CTAG 2 cut(s) 201, 815
FspI TGCGCA 1 cut(s) 327
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 725
GsuI CTGGAG 1 cut(s) 592
HaeIII GGCC 3 cut(s) 167, 381, 405
HapII CCGG 1 cut(s) 218
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 328
Hin1II CATG 4 cut(s) 332, 460, 758, 950
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 3 cut(s) 11, 17, 680
HpaII CCGG 1 cut(s) 218
HphI GGTGA 3 cut(s) 53, 629, 975
Hpy166II GTNNAC 2 cut(s) 44, 620
Hpy188I TCNGA 5 cut(s) 16, 209, 497, 600, 877
Hpy188III TCNNGA 5 cut(s) 266, 334, 815, 890, 947
Hpy8I GTNNAC 2 cut(s) 44, 620
Hpy99I CGWCG 2 cut(s) 374, 377
HpyAV CCTTC 2 cut(s) 157, 1006
HpyCH4III ACNGT 2 cut(s) 142, 485
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 2 cut(s) 688, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 694, 772
HpyF3I CTNAG 7 cut(s) 51, 169, 317, 443, 693, 908, 1001
HpySE526I ACGT 1 cut(s) 824
Hsp92II CATG 4 cut(s) 332, 460, 758, 950
HspAI GCGC 1 cut(s) 326
KpnI GGTACC 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 2 cut(s) 186, 496
MaeI CTAG 2 cut(s) 201, 815
MaeII ACGT 1 cut(s) 824
MalI GATC 9 cut(s) 156, 190, 222, 368, 396, 735, 843, 888, 900
MbiI CCGCTC 1 cut(s) 69
MboI GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
MboII GAAGA 9 cut(s) 104, 158, 215, 284, 376, 618, 844, 896, 947
MflI RGATCY 4 cut(s) 188, 220, 886, 898
MhlI GDGCHC 1 cut(s) 822
MluCI AATT 3 cut(s) 76, 592, 662
MlyI GAGTC 2 cut(s) 5, 689
MnlI CCTC 9 cut(s) 31, 46, 46, 113, 178, 246, 452, 832, 1003
MseI TTAA 2 cut(s) 309, 738
MspA1I CMGCKG 1 cut(s) 727
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 712
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 1 cut(s) 712
MvnI CGCG 1 cut(s) 678
MwoI GCNNNNNNNGC 2 cut(s) 694, 772
NdeII GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
NlaIII CATG 4 cut(s) 332, 460, 758, 950
NlaIV GGNNCC 2 cut(s) 206, 542
NsbI TGCGCA 1 cut(s) 327
NspI RCATGY 1 cut(s) 332
PagI TCATGA 1 cut(s) 946
PceI AGGCCT 1 cut(s) 167
PctI GAATGC 1 cut(s) 662
PfeI GAWTC 1 cut(s) 17
PflMI CCANNNNNTGG 3 cut(s) 247, 388, 516
PkrI GCNGC 1 cut(s) 726
PleI GAGTC 2 cut(s) 5, 688
PpsI GAGTC 2 cut(s) 5, 688
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 710
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 2 cut(s) 206, 542
PspPI GGNCC 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 727
PsuI RGATCY 4 cut(s) 188, 220, 886, 898
PvuII CAGCTG 1 cut(s) 727
RsaI GTAC 3 cut(s) 487, 542, 980
RsaNI GTAC 3 cut(s) 486, 541, 979
SacI GAGCTC 1 cut(s) 822
SaqAI TTAA 2 cut(s) 309, 738
SatI GCNGC 1 cut(s) 725
Sau3AI GATC 9 cut(s) 154, 188, 220, 366, 394, 733, 841, 886, 898
Sau96I GGNCC 1 cut(s) 519
SchI GAGTC 2 cut(s) 5, 689
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 1 cut(s) 822
SfaNI GCATC 2 cut(s) 186, 496
SinI GGWCC 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 3 cut(s) 76, 592, 662
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 4 cut(s) 69, 392, 522, 676
SspI AATATT 1 cut(s) 433
SspMI CTAG 2 cut(s) 201, 815
SstI GAGCTC 1 cut(s) 822
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 710
StyI CCWWGG 2 cut(s) 200, 536
TaaI ACNGT 2 cut(s) 142, 485
TaiI ACGT 1 cut(s) 827
TaqI TCGA 6 cut(s) 23, 175, 369, 640, 851, 891
TasI AATT 3 cut(s) 76, 592, 662
TatI WGTACW 1 cut(s) 978
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 309, 738
Tru9I TTAA 2 cut(s) 309, 738
TscAI CASTG 2 cut(s) 559, 651
TseI GCWGC 1 cut(s) 724
TspDTI ATGAA 7 cut(s) 215, 226, 317, 600, 935, 948, 963
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 2 cut(s) 559, 651
Van91I CCANNNNNTGG 3 cut(s) 247, 388, 516
VpaK11BI GGWCC 1 cut(s) 519
XbaI TCTAGA 1 cut(s) 814
XceI RCATGY 1 cut(s) 332
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 2 cut(s) 201, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.