Rh3AG114400
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013953
Physical Location & Seq
Forward (+)
9708823 .. 9710982
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG114400.1

Sequence Viewer

Length: 1047 bp
ATGGAGGGGATGAGCGGCGAGTCTGAGTGCTCGAAGACAAGTCCCTCCGATGACCGAAATGAGGAAGGAAGTGAGAGTGGAGAGAACCACGATGGCGAAATCAGTAAGCCCAAAAACAATGGAGGAAGCTCAAGCAACAGCACGGTAGAAGAAAGTGATCAGAAAAAGGGATCGGTGCGACCCTATGTTAGATCCAAGATGCCAAGGCTCAGGTGGACACCGGATCTCCATCTTCGCTTTGTTCACGCGGTGGAGAGGCTCGGAGGACAAGATAGAGCTACACCAAAGATGGTTCTTCAGCTTATGAACATCAAGGGGCTAAGTATTGCACATGTCAAGAGCCATTTACAGATGTATAGAAGCAAGAAGATCGACGATGCAGGCCAAGTGATAGCAGATCAAGGACATCATCTTGCTGAATGTGGAGATAAAAATATATACAACCTCAGCCAACTTCCCATGCTTCAAGGATACAACCGAAGCCACATGAGTACCAGCTTCAGATATGGATACGGTGATGCCAATTCTTGGAGTAATAGTGCTTATGAGAACTTGAGGCATCCAAGAATATTTCAAGGCACAATGACGGAGAAGCTCTTTGGTAGCAGTACTACAACTAGCAACTGGAATAGTACTGCTTACAGCAATTTCCGGACAAGCTCCGAACAAGTACCAACTTGGATAACTCATACACTCAAAGACGAATGCAATCAATTGTATAACATTCGTCGACAGTCCTTGCAAGCACATCAAACTAGGCAGAGTCTCATTGATCATCTTAATCCCACAACCCATGTGCAACCCAAAGAGAAGGATCACTTTACAAGTTTGAGCAGCACACCAACCAATCTACAAGAGTTGAAGACGTTGAAAAGGAAGGCTTCGGATTGCGATCTTGATTTAGATCTGTCTCTCAGGCTAACAACGAAGAAGAATGACGAGAGTCCGAGAAGTACTACTATGAGGGACGATGAAGTTGATTGCACTAGTCTTTCTCTGTCATTGTACTCACCGGCATCGGCAAAAATCAGAAGGGTGGAGGAATAA

Protein Analysis

348

Amino Acids

39.32

Weight (kDa)

7.73

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 69 - 120 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 528
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 730
AccII CGCG 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 651
AciI CCGC 2 cut(s) 15, 248
AclWI GGATC 4 cut(s) 178, 186, 231, 822
AcuI CTGAAG 2 cut(s) 281, 484
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 6 cut(s) 493, 610, 634, 672, 955, 1007
AfiI CCNNNNNNNGG 2 cut(s) 61, 528
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 4 cut(s) 467, 575, 862, 871
AhlI ACTAGT 1 cut(s) 986
AluBI AGCT 6 cut(s) 129, 278, 301, 498, 595, 660
AluI AGCT 6 cut(s) 129, 278, 301, 498, 595, 660
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 770, 915
AlwI GGATC 4 cut(s) 178, 186, 231, 822
Aor13HI TCCGGA 1 cut(s) 651
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 834
AsuHPI GGTGA 2 cut(s) 527, 1002
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BbsI GAAGAC 2 cut(s) 41, 869
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 846
BccI CCATC 3 cut(s) 86, 237, 283
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciVI GTATCC 2 cut(s) 464, 503
BclI TGATCA 2 cut(s) 157, 772
BcoDI GTCTC 2 cut(s) 770, 915
BcuI ACTAGT 1 cut(s) 986
BfaI CTAG 3 cut(s) 618, 756, 987
BfuI GTATCC 2 cut(s) 464, 503
BglII AGATCT 1 cut(s) 904
BisI GCNGC 2 cut(s) 16, 835
BlsI GCNGC 2 cut(s) 17, 836
BmcAI AGTACT 3 cut(s) 610, 634, 955
BmsI GCATC 5 cut(s) 189, 367, 508, 568, 1025
BoxI GACNNNNGTC 1 cut(s) 942
BpiI GAAGAC 2 cut(s) 41, 869
Bpu10I CCTNAGC 2 cut(s) 209, 446
BpuEI CTTGAG 2 cut(s) 115, 574
BsaBI GATNNNNATC 3 cut(s) 228, 891, 903
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 2 cut(s) 220, 651
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 523, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 528
Bse118I RCCGGY 1 cut(s) 1012
Bse1I ACTGG 1 cut(s) 629
Bse8I GATNNNNATC 3 cut(s) 228, 891, 903
BseAI TCCGGA 1 cut(s) 651
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 15, 559
BseJI GATNNNNATC 3 cut(s) 228, 891, 903
BseLI CCNNNNNNNGG 2 cut(s) 61, 528
BseMII CTCAG 4 cut(s) 15, 223, 460, 928
BseNI ACTGG 1 cut(s) 629
BseXI GCAGC 1 cut(s) 846
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 221, 652, 1013
BslFI GGGAC 2 cut(s) 27, 980
BslI CCNNNNNNNGG 2 cut(s) 61, 528
BsmAI GTCTC 2 cut(s) 770, 915
BsmFI GGGAC 2 cut(s) 27, 980
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 651
BspACI CCGC 2 cut(s) 15, 248
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 4 cut(s) 16, 222, 459, 927
BspEI TCCGGA 1 cut(s) 651
BspFNI CGCG 1 cut(s) 248
BspPI GGATC 4 cut(s) 178, 186, 231, 822
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 1012
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 1012
BssECI CCNNGG 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 145, 515, 735
BstC8I GCNNGC 2 cut(s) 382, 744
BstDEI CTNAG 5 cut(s) 24, 209, 320, 446, 914
BstF5I GGATG 2 cut(s) 15, 559
BstFNI CGCG 1 cut(s) 248
BstMAI GTCTC 2 cut(s) 770, 915
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 942
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 846
BstV2I GAAGAC 2 cut(s) 41, 869
BstX2I RGATCY 3 cut(s) 191, 223, 904
BstYI RGATCY 3 cut(s) 191, 223, 904
BsuI GTATCC 2 cut(s) 464, 503
BsuRI GGCC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 15, 559
Cac8I GCNNGC 2 cut(s) 382, 744
Cfr10I RCCGGY 1 cut(s) 1012
Csp6I GTAC 6 cut(s) 492, 609, 633, 671, 954, 1006
CviAII CATG 4 cut(s) 332, 460, 487, 794
CviQI GTAC 6 cut(s) 492, 609, 633, 671, 954, 1006
DdeI CTNAG 5 cut(s) 24, 209, 320, 446, 914
DraIII CACNNNGTG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 281, 484
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 335, 463, 490, 797
FalI AAGNNNNNCTT 4 cut(s) 803, 835, 865, 897
FaqI GGGAC 2 cut(s) 27, 980
FatI CATG 4 cut(s) 331, 459, 486, 793
FbaI TGATCA 2 cut(s) 157, 772
FblI GTMKAC 1 cut(s) 730
Fnu4HI GCNGC 2 cut(s) 16, 835
FokI GGATG 2 cut(s) 22, 546
Fsp4HI GCNGC 2 cut(s) 16, 835
FspBI CTAG 3 cut(s) 618, 756, 987
GluI GCNGC 2 cut(s) 16, 835
HaeIII GGCC 1 cut(s) 384
HapII CCGG 3 cut(s) 221, 652, 1013
Hin1II CATG 4 cut(s) 335, 463, 490, 797
HincII GTYRAC 1 cut(s) 731
HindII GTYRAC 1 cut(s) 731
HinfI GANTC 3 cut(s) 20, 763, 943
HpaII CCGG 3 cut(s) 221, 652, 1013
HphI GGTGA 2 cut(s) 527, 1002
Hpy166II GTNNAC 3 cut(s) 216, 244, 731
Hpy188I TCNGA 9 cut(s) 25, 49, 162, 263, 503, 664, 886, 948, 1031
Hpy188III TCNNGA 3 cut(s) 337, 652, 896
Hpy8I GTNNAC 3 cut(s) 216, 244, 731
Hpy99I CGWCG 2 cut(s) 377, 732
HpyAV CCTTC 4 cut(s) 59, 805, 871, 1026
HpyCH4III ACNGT 3 cut(s) 145, 515, 735
HpyCH4IV ACGT 1 cut(s) 866
HpyCH4V TGCA 6 cut(s) 329, 380, 708, 742, 799, 984
HpyF3I CTNAG 5 cut(s) 24, 209, 320, 446, 914
HpySE526I ACGT 1 cut(s) 866
Hsp92II CATG 4 cut(s) 335, 463, 490, 797
Kpn2I TCCGGA 1 cut(s) 651
Ksp22I TGATCA 2 cut(s) 157, 772
LmnI GCTCC 1 cut(s) 665
LpnPI CCDG 8 cut(s) 196, 234, 366, 508, 610, 665, 901, 1026
Lsp1109I GCAGC 1 cut(s) 846
LweI GCATC 5 cut(s) 189, 367, 508, 568, 1025
MaeI CTAG 3 cut(s) 618, 756, 987
MaeII ACGT 1 cut(s) 866
MbiI CCGCTC 1 cut(s) 15
MboII GAAGA 8 cut(s) 46, 161, 224, 287, 379, 874, 940, 943
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 3 cut(s) 191, 223, 904
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 3 cut(s) 523, 646, 713
MlyI GAGTC 3 cut(s) 29, 772, 952
MnlI CCTC 9 cut(s) 55, 55, 116, 249, 257, 455, 549, 957, 1033
MroI TCCGGA 1 cut(s) 651
MseI TTAA 1 cut(s) 780
MspI CCGG 3 cut(s) 221, 652, 1013
MunI CAATTG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 710
MvnI CGCG 1 cut(s) 248
NlaIII CATG 4 cut(s) 335, 463, 490, 797
NspI RCATGY 1 cut(s) 335
PciI ACATGT 1 cut(s) 331
PctI GAATGC 1 cut(s) 710
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 2 cut(s) 17, 836
PleI GAGTC 3 cut(s) 28, 771, 951
PpsI GAGTC 3 cut(s) 28, 771, 951
PscI ACATGT 1 cut(s) 331
PshAI GACNNNNGTC 1 cut(s) 942
PsuI RGATCY 3 cut(s) 191, 223, 904
RsaI GTAC 6 cut(s) 493, 610, 634, 672, 955, 1007
RsaNI GTAC 6 cut(s) 492, 609, 633, 671, 954, 1006
SalI GTCGAC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 2 cut(s) 16, 835
ScaI AGTACT 3 cut(s) 610, 634, 955
SchI GAGTC 3 cut(s) 29, 772, 952
SduI GDGCHC 1 cut(s) 32
SetI ASST 9 cut(s) 131, 215, 280, 303, 447, 500, 597, 662, 869
SfaNI GCATC 5 cut(s) 189, 367, 508, 568, 1025
SmlI CTYRAG 2 cut(s) 130, 553
SmoI CTYRAG 2 cut(s) 130, 553
SpeI ACTAGT 1 cut(s) 986
Sse9I AATT 3 cut(s) 523, 646, 713
SsiI CCGC 2 cut(s) 15, 248
SspI AATATT 1 cut(s) 570
SspMI CTAG 3 cut(s) 618, 756, 987
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 145, 515, 735
TaiI ACGT 1 cut(s) 869
TaqI TCGA 3 cut(s) 32, 372, 730
TaqII GACCGA 1 cut(s) 69
TasI AATT 3 cut(s) 523, 646, 713
TatI WGTACW 4 cut(s) 608, 632, 953, 1005
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TseI GCWGC 1 cut(s) 834
TspDTI ATGAA 2 cut(s) 320, 987
TspGWI ACGGA 1 cut(s) 602
Van91I CCANNNNNTGG 1 cut(s) 528
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 730
XspI CTAG 3 cut(s) 618, 756, 987
ZrmI AGTACT 3 cut(s) 610, 634, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.