pycom04g14550
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013953
Physical Location & Seq
Reverse (-)
17428297 .. 17429855
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14550.3

Sequence Viewer

Length: 876 bp
ATGATGGGGAGCCAGGAAGGCTCTGAGTGCTCAAAGACAAGTCCCTCGGATAAACAGAATGAGGACGGAAGCGAAAGCGGAGAGAATTATAGCAATGGAGAAAATAGTAAGCCGAAAAACAACGGAGGAAGCTCAAGCAACAGCACAGTTGAAGAGAGTGATCAAAAGAAGACATCAGTTAGACCTTATGTTAGATCCAAGATGCCTAGGCTCCGATGGACACCGGATCTTCATCTTCGTTTCATCCACGCCGTGGAGAGGCTTGGTGGTCAAGATATACTAGCGGATCATCAAGGTCATCTTGTTGAATGCGGAGATAAAAATATTTATAACCTCAGCCAACTCCCCATGCTTCAAGGATATAACCGAAGCCACTCTACCAGCTTCAGATATGGATCATACGGCGATACGAATTCCTGGACCGCGCTTGAAAATCCAAGGTTTTCGAGAAGTAGCACTGGATTTCAAGGCAACTGGAGCACTAGTAGTACTGGTAATAATGCTTACAATTATCTGACAAGTTGTTCATTTGGTGATCATCATCCACAATCATCTTGGATTACTCGTACACTGAAAGAAGAATGCCAGCTCCATAATATCCGTGAGTTCTTGAAACCAAAGGAACTCATCACAAGTTTCAACACCAACCGTGGCCCTTATCGAGATTCCGACACTATAAGCAAGAATCTAGTACAAGATCAGTCGAAGATGTTGAAAAGAAAGGCTTCGGATTGCGATGATCTTGATTTGGATCTGTCTCTCAGGCTAACATCAAGGAAGAATGATGAGGATCATACTCATGAAGTTGATAGTAATCTGTCTCTGTGTTTGTACTCACCTCCCACGTCCTCAAAGCTCAGGAGGTTGAAGGAATGA

Protein Analysis

292

Amino Acids

32.92

Weight (kDa)

6.8

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 253
AccII CGCG 1 cut(s) 425
AciI CCGC 4 cut(s) 78, 284, 312, 423
AclWI GGATC 6 cut(s) 189, 234, 294, 403, 759, 798
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 1 cut(s) 370
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 4 cut(s) 490, 568, 693, 833
AfiI CCNNNNNNNGG 2 cut(s) 253, 258
AgsI TTSAA 9 cut(s) 152, 308, 356, 431, 467, 613, 640, 715, 868
AhlI ACTAGT 1 cut(s) 482
AjiI CACGTC 1 cut(s) 846
AjnI CCWGG 2 cut(s) 12, 416
AluBI AGCT 4 cut(s) 132, 384, 589, 856
AluI AGCT 4 cut(s) 132, 384, 589, 856
Alw21I GWGCWC 2 cut(s) 32, 482
Alw26I GTCTC 2 cut(s) 762, 825
AlwI GGATC 6 cut(s) 189, 234, 294, 403, 759, 798
AoxI GGCC 1 cut(s) 652
ApoI RAATTY 1 cut(s) 412
Asp700I GAANNNNTTC 1 cut(s) 724
AspA2I CCTAGG 1 cut(s) 206
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 420, 653
AsuHPI GGTGA 2 cut(s) 545, 828
AvaII GGWCC 1 cut(s) 420
AvrII CCTAGG 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 361, 393
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 32, 482
BbvCI CCTCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 210
BceAI ACGGC 2 cut(s) 236, 418
BciT130I CCWGG 2 cut(s) 14, 418
BclI TGATCA 2 cut(s) 160, 535
BcoDI GTCTC 2 cut(s) 762, 825
BcuI ACTAGT 1 cut(s) 482
BfaI CTAG 4 cut(s) 207, 281, 483, 689
BglI GCCNNNNNGGC 1 cut(s) 18
BlnI CCTAGG 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 2 cut(s) 14, 418
Bme18I GGWCC 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 846
BmgT120I GGNCC 2 cut(s) 420, 653
BmiI GGNNCC 2 cut(s) 11, 212
BmrFI CCNGG 2 cut(s) 14, 418
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 2 cut(s) 335, 857
BpuEI CTTGAG 1 cut(s) 118
BsaBI GATNNNNATC 6 cut(s) 231, 394, 540, 750, 789, 813
BsaJI CCNNGG 5 cut(s) 45, 206, 252, 437, 649
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 258
Bse1I ACTGG 3 cut(s) 463, 479, 496
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 6 cut(s) 231, 394, 540, 750, 789, 813
BseBI CCWGG 2 cut(s) 14, 418
BseDI CCNNGG 5 cut(s) 45, 206, 252, 437, 649
BseGI GGATG 2 cut(s) 243, 541
BseJI GATNNNNATC 6 cut(s) 231, 394, 540, 750, 789, 813
BseLI CCNNNNNNNGG 2 cut(s) 253, 258
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 4 cut(s) 15, 349, 775, 871
BseNI ACTGG 3 cut(s) 463, 479, 496
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 1 cut(s) 654
BsiHKAI GWGCWC 2 cut(s) 32, 482
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 253, 258
BsmAI GTCTC 2 cut(s) 762, 825
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 2 cut(s) 314, 587
BsnI GGCC 1 cut(s) 654
Bsp1286I GDGCHC 2 cut(s) 32, 482
BspACI CCGC 4 cut(s) 78, 284, 312, 423
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 4 cut(s) 16, 348, 774, 870
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 2 cut(s) 11, 212
BspPI GGATC 6 cut(s) 189, 234, 294, 403, 759, 798
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 3 cut(s) 463, 479, 496
BssECI CCNNGG 5 cut(s) 45, 206, 252, 437, 649
BssT1I CCWWGG 2 cut(s) 206, 437
Bst2UI CCWGG 2 cut(s) 14, 418
Bst4CI ACNGT 2 cut(s) 148, 650
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 4 cut(s) 24, 335, 761, 857
BstDSI CCRYGG 2 cut(s) 252, 649
BstF5I GGATG 2 cut(s) 243, 541
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 427
BstMAI GTCTC 2 cut(s) 762, 825
BstMWI GCNNNNNNNGC 3 cut(s) 18, 27, 477
BstNI CCWGG 2 cut(s) 14, 418
BstSCI CCNGG 2 cut(s) 12, 416
BstUI CGCG 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 3 cut(s) 194, 226, 751
BstYI RGATCY 3 cut(s) 194, 226, 751
BsuRI GGCC 1 cut(s) 654
BtgI CCRYGG 2 cut(s) 252, 649
BtgZI GCGATG 1 cut(s) 750
BtrI CACGTC 1 cut(s) 846
BtsCI GGATG 2 cut(s) 243, 541
BtsIMutI CAGTG 2 cut(s) 456, 569
Cac8I GCNNGC 1 cut(s) 587
CciI TCATGA 1 cut(s) 799
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 420, 653
Csp6I GTAC 4 cut(s) 489, 567, 692, 832
CviAII CATG 2 cut(s) 349, 800
CviQI GTAC 4 cut(s) 489, 567, 692, 832
DdeI CTNAG 4 cut(s) 24, 335, 761, 857
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 206, 437
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 12, 416
EcoT14I CCWWGG 2 cut(s) 206, 437
ErhI CCWWGG 2 cut(s) 206, 437
FaeI CATG 2 cut(s) 352, 803
FalI AAGNNNNNCTT 4 cut(s) 285, 317, 709, 741
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 348, 799
FbaI TGATCA 2 cut(s) 160, 535
FokI GGATG 2 cut(s) 230, 528
FspBI CTAG 4 cut(s) 207, 281, 483, 689
GlaI GCGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 1 cut(s) 654
HapII CCGG 1 cut(s) 224
HhaI GCGC 1 cut(s) 427
Hin1II CATG 2 cut(s) 352, 803
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 2 cut(s) 665, 685
HpaII CCGG 1 cut(s) 224
HphI GGTGA 2 cut(s) 545, 828
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 7 cut(s) 25, 49, 215, 389, 516, 670, 730
Hpy188III TCNNGA 7 cut(s) 272, 447, 610, 662, 743, 800, 859
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 2 cut(s) 11, 862
HpyCH4III ACNGT 2 cut(s) 148, 650
HpyCH4IV ACGT 1 cut(s) 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 27, 477
HpyF3I CTNAG 4 cut(s) 24, 335, 761, 857
HpySE526I ACGT 1 cut(s) 845
Hsp92II CATG 2 cut(s) 352, 803
HspAI GCGC 1 cut(s) 425
Ksp22I TGATCA 2 cut(s) 160, 535
LmnI GCTCC 4 cut(s) 9, 216, 477, 594
LweI GCATC 1 cut(s) 192
MaeI CTAG 4 cut(s) 207, 281, 483, 689
MaeII ACGT 1 cut(s) 845
MboII GAAGA 7 cut(s) 164, 181, 221, 227, 590, 718, 790
MflI RGATCY 3 cut(s) 194, 226, 751
MhlI GDGCHC 2 cut(s) 32, 482
MluCI AATT 3 cut(s) 85, 412, 508
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 9 cut(s) 55, 55, 119, 252, 344, 781, 849, 855, 859
MroXI GAANNNNTTC 1 cut(s) 724
MslI CAYNNNNRTG 1 cut(s) 798
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 14, 418
Mva1269I GAATGC 2 cut(s) 314, 587
MvaI CCWGG 2 cut(s) 14, 418
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 3 cut(s) 18, 27, 477
NlaIII CATG 2 cut(s) 352, 803
NlaIV GGNNCC 2 cut(s) 11, 212
PagI TCATGA 1 cut(s) 799
PctI GAATGC 2 cut(s) 314, 587
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 2 cut(s) 665, 685
PflMI CCANNNNNTGG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 416
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 12, 416
PspGI CCWGG 2 cut(s) 12, 416
PspN4I GGNNCC 2 cut(s) 11, 212
PspPI GGNCC 2 cut(s) 420, 653
PsuI RGATCY 3 cut(s) 194, 226, 751
RsaI GTAC 4 cut(s) 490, 568, 693, 833
RsaNI GTAC 4 cut(s) 489, 567, 692, 832
RseI CAYNNNNRTG 1 cut(s) 798
Sau96I GGNCC 2 cut(s) 420, 653
ScaI AGTACT 1 cut(s) 490
ScrFI CCNGG 2 cut(s) 14, 418
SduI GDGCHC 2 cut(s) 32, 482
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 482
Sse9I AATT 3 cut(s) 85, 412, 508
SsiI CCGC 4 cut(s) 78, 284, 312, 423
SspI AATATT 1 cut(s) 325
SspMI CTAG 4 cut(s) 207, 281, 483, 689
StyD4I CCNGG 2 cut(s) 12, 416
StyI CCWWGG 2 cut(s) 206, 437
TaaI ACNGT 2 cut(s) 148, 650
TaiI ACGT 1 cut(s) 848
TaqI TCGA 3 cut(s) 446, 661, 704
TasI AATT 3 cut(s) 85, 412, 508
TatI WGTACW 3 cut(s) 488, 691, 831
TfiI GAWTC 2 cut(s) 665, 685
TscAI CASTG 2 cut(s) 463, 576
TspDTI ATGAA 4 cut(s) 221, 232, 516, 816
TspGWI ACGGA 3 cut(s) 81, 138, 590
TspRI CASTG 2 cut(s) 463, 576
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 552
XmaJI CCTAGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 4 cut(s) 207, 281, 483, 689
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.