MD04G1162600.v1.1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013953
Physical Location & Seq
Reverse (-)
25394826 .. 25396909
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1162600.v1.1.491

Sequence Viewer

Length: 987 bp
ATGATGGGGAGCCAGGGAGGCTCTGAGTGCTCAAAGACAAGTCCCTCGGATAAACAGAATGAGGACGGAAGCGAAAGCGGAGAGAATTATAGCAATGGAGAAAATAGTAAGCCGAAAAACAATGGAGGAAGCTCGAGCAACAGCACAGTTGAAGAGAGTGATCAAAAGAAGACATCAGTTAGACCTTATGTTAGATCCAAGATGCCTAGGCTCCGATGGACACCAGATCTTCATCTTCGTTTCATCCACGCCGTGGAGAGGCTTGGTGGTCAAGATAGAGCTACACCAAAGTTGGTTCTTCAACTGATGAACATTAAGGGACTAAATATTGCACATGTCAAGAGCCATTTACAGATGTACAGAAGCAAGAAGATCGACGACGCAGGGCAAGTACTAGCGGATCATCAAGGCCATCTTGTTGAATGCGGAGATAAAAATATTTATAACCTCAGCCAACTCCCCATGCTTCAAGGATATAACCGAAGCCACACTACCAGCTTCAGATATGGATCATACGGCGATACGAATTCCTGGACCGCGCTTGAAAATCCAAGGTTTTCGAGAAGTAGCACTGGATTTCAAGGCAACTGGAGCACTAGTAGTACTGGTAATAATGCTTACAATTATCTTACAAGTTGTTCATTTGGTGATCATCCACAATCATCTTGGATTACTCGTACACTGAAAGAAGAATGCCAGCTCCATAATATCCGTGAGTCCTTGAAACCAAAGGAATTCATCACAAGTTTCAACACCAACCGTGGCCCTTTCCGAGATTCCGACACTATAAGCAAGAATCTAGTACAAGATCAGTCGAAGATGTTGAAAAGAAAGGCTTCGGATTGCGATGATCTTGATTTGGATCTGTCTCTCAGGCTAACATCAAAGAAGAATGATGAGGATCATACTCATGAAGTTGATAGTAATCTGTCTCTGTGTTTGTACTCACCACCCACGTCCTCAAAGCTCAGGAGGTTGAAGGAATGA

Protein Analysis

329

Amino Acids

36.94

Weight (kDa)

8.76

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 70 - 121 5.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 253
AccII CGCG 1 cut(s) 539
AciI CCGC 4 cut(s) 78, 398, 426, 537
AclWI GGATC 5 cut(s) 189, 408, 517, 870, 909
AcsI RAATTY 2 cut(s) 526, 734
AcuI CTGAAG 1 cut(s) 484
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 6 cut(s) 359, 393, 604, 679, 804, 944
AfiI CCNNNNNNNGG 2 cut(s) 253, 258
AflIII ACRYGT 1 cut(s) 334
AhlI ACTAGT 1 cut(s) 596
AjiI CACGTC 1 cut(s) 957
AjnI CCWGG 2 cut(s) 12, 530
AluBI AGCT 5 cut(s) 132, 281, 498, 700, 967
AluI AGCT 5 cut(s) 132, 281, 498, 700, 967
Alw21I GWGCWC 2 cut(s) 32, 596
Alw26I GTCTC 2 cut(s) 873, 936
AlwI GGATC 5 cut(s) 189, 408, 517, 870, 909
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 2 cut(s) 409, 763
ApoI RAATTY 2 cut(s) 526, 734
Asp700I GAANNNNTTC 1 cut(s) 835
AspA2I CCTAGG 1 cut(s) 206
AspLEI GCGC 1 cut(s) 541
AspS9I GGNCC 2 cut(s) 534, 764
AsuHPI GGTGA 2 cut(s) 659, 939
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 534
AvrII CCTAGG 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 475, 507
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 32, 596
BbvCI CCTCAGC 1 cut(s) 449
BccI CCATC 2 cut(s) 210, 420
BceAI ACGGC 2 cut(s) 236, 532
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 2 cut(s) 14, 532
BclI TGATCA 2 cut(s) 160, 649
BcoDI GTCTC 2 cut(s) 873, 936
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 4 cut(s) 207, 395, 597, 800
BglI GCCNNNNNGGC 1 cut(s) 18
BglII AGATCT 1 cut(s) 226
BlnI CCTAGG 1 cut(s) 206
BmcAI AGTACT 2 cut(s) 393, 604
Bme1390I CCNGG 2 cut(s) 14, 532
Bme18I GGWCC 1 cut(s) 534
BmeT110I CYCGRG 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 957
BmgT120I GGNCC 2 cut(s) 534, 764
BmiI GGNNCC 2 cut(s) 11, 212
BmrFI CCNGG 2 cut(s) 14, 532
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 610
Bpu10I CCTNAGC 2 cut(s) 449, 968
BsaBI GATNNNNATC 5 cut(s) 231, 508, 861, 900, 924
BsaJI CCNNGG 6 cut(s) 13, 45, 206, 252, 551, 760
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 258
Bse1I ACTGG 3 cut(s) 577, 593, 610
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 5 cut(s) 231, 508, 861, 900, 924
BseBI CCWGG 2 cut(s) 14, 532
BseDI CCNNGG 6 cut(s) 13, 45, 206, 252, 551, 760
BseGI GGATG 2 cut(s) 243, 652
BseJI GATNNNNATC 5 cut(s) 231, 508, 861, 900, 924
BseLI CCNNNNNNNGG 2 cut(s) 253, 258
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 4 cut(s) 15, 463, 886, 982
BseNI ACTGG 3 cut(s) 577, 593, 610
Bsh1236I CGCG 1 cut(s) 539
BshFI GGCC 2 cut(s) 411, 765
BsiHKAI GWGCWC 2 cut(s) 32, 596
BsiHKCI CYCGRG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 27, 333
BslI CCNNNNNNNGG 2 cut(s) 253, 258
BsmAI GTCTC 2 cut(s) 873, 936
BsmFI GGGAC 2 cut(s) 27, 333
BsmI GAATGC 2 cut(s) 428, 698
BsnI GGCC 2 cut(s) 411, 765
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 32, 596
Bsp1407I TGTACA 1 cut(s) 357
BspACI CCGC 4 cut(s) 78, 398, 426, 537
BspANI GGCC 2 cut(s) 411, 765
BspCNI CTCAG 4 cut(s) 16, 462, 885, 981
BspFNI CGCG 1 cut(s) 539
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 2 cut(s) 11, 212
BspPI GGATC 5 cut(s) 189, 408, 517, 870, 909
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 3 cut(s) 577, 593, 610
BssECI CCNNGG 6 cut(s) 13, 45, 206, 252, 551, 760
BssT1I CCWWGG 2 cut(s) 206, 551
Bst2UI CCWGG 2 cut(s) 14, 532
Bst4CI ACNGT 2 cut(s) 148, 761
Bst6I CTCTTC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 698
BstDEI CTNAG 4 cut(s) 24, 449, 872, 968
BstDSI CCRYGG 2 cut(s) 252, 760
BstF5I GGATG 2 cut(s) 243, 652
BstFNI CGCG 1 cut(s) 539
BstHHI GCGC 1 cut(s) 541
BstMAI GTCTC 2 cut(s) 873, 936
BstMWI GCNNNNNNNGC 3 cut(s) 18, 27, 591
BstNI CCWGG 2 cut(s) 14, 532
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 12, 530
BstUI CGCG 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 3 cut(s) 194, 226, 862
BstYI RGATCY 3 cut(s) 194, 226, 862
BsuRI GGCC 2 cut(s) 411, 765
BtgI CCRYGG 2 cut(s) 252, 760
BtgZI GCGATG 1 cut(s) 861
BtrI CACGTC 1 cut(s) 957
BtsCI GGATG 2 cut(s) 243, 652
BtsIMutI CAGTG 2 cut(s) 570, 680
Cac8I GCNNGC 1 cut(s) 698
CciI TCATGA 1 cut(s) 910
CfoI GCGC 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 534, 764
CseI GACGC 1 cut(s) 389
Csp6I GTAC 6 cut(s) 358, 392, 603, 678, 803, 943
CviAII CATG 3 cut(s) 335, 463, 911
CviQI GTAC 6 cut(s) 358, 392, 603, 678, 803, 943
DdeI CTNAG 4 cut(s) 24, 449, 872, 968
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 206, 551
Eco47I GGWCC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 133
EcoRI GAATTC 2 cut(s) 526, 734
EcoRII CCWGG 2 cut(s) 12, 530
EcoT14I CCWWGG 2 cut(s) 206, 551
ErhI CCWWGG 2 cut(s) 206, 551
FaeI CATG 3 cut(s) 338, 466, 914
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 820, 852
FaqI GGGAC 2 cut(s) 27, 333
FatI CATG 3 cut(s) 334, 462, 910
FbaI TGATCA 2 cut(s) 160, 649
FokI GGATG 2 cut(s) 230, 639
FspBI CTAG 4 cut(s) 207, 395, 597, 800
GlaI GCGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 610
HaeIII GGCC 2 cut(s) 411, 765
HgaI GACGC 1 cut(s) 389
HhaI GCGC 1 cut(s) 541
Hin1II CATG 3 cut(s) 338, 466, 914
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HinfI GANTC 3 cut(s) 716, 776, 796
HphI GGTGA 2 cut(s) 659, 939
Hpy166II GTNNAC 1 cut(s) 680
Hpy188I TCNGA 7 cut(s) 25, 49, 215, 503, 773, 781, 841
Hpy188III TCNNGA 6 cut(s) 272, 340, 561, 854, 911, 970
Hpy8I GTNNAC 1 cut(s) 680
Hpy99I CGWCG 2 cut(s) 380, 383
HpyAV CCTTC 1 cut(s) 973
HpyCH4III ACNGT 2 cut(s) 148, 761
HpyCH4IV ACGT 1 cut(s) 956
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 27, 591
HpyF3I CTNAG 4 cut(s) 24, 449, 872, 968
HpySE526I ACGT 1 cut(s) 956
Hsp92II CATG 3 cut(s) 338, 466, 914
HspAI GCGC 1 cut(s) 539
Ksp22I TGATCA 2 cut(s) 160, 649
LmnI GCTCC 4 cut(s) 9, 216, 591, 705
LweI GCATC 1 cut(s) 192
MaeI CTAG 4 cut(s) 207, 395, 597, 800
MaeII ACGT 1 cut(s) 956
MboII GAAGA 9 cut(s) 164, 181, 221, 227, 290, 382, 701, 829, 901
MflI RGATCY 3 cut(s) 194, 226, 862
MhlI GDGCHC 2 cut(s) 32, 596
MluCI AATT 4 cut(s) 85, 526, 622, 734
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 804
MnlI CCTC 9 cut(s) 11, 55, 55, 119, 252, 458, 892, 966, 970
MroXI GAANNNNTTC 1 cut(s) 835
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 909
MspR9I CCNGG 2 cut(s) 14, 532
Mva1269I GAATGC 2 cut(s) 428, 698
MvaI CCWGG 2 cut(s) 14, 532
MvnI CGCG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 18, 27, 591
NlaIII CATG 3 cut(s) 338, 466, 914
NlaIV GGNNCC 2 cut(s) 11, 212
NspI RCATGY 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 133
PagI TCATGA 1 cut(s) 910
PciI ACATGT 1 cut(s) 334
PctI GAATGC 2 cut(s) 428, 698
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 2 cut(s) 776, 796
PflMI CCANNNNNTGG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 530
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PscI ACATGT 1 cut(s) 334
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 12, 530
PspGI CCWGG 2 cut(s) 12, 530
PspN4I GGNNCC 2 cut(s) 11, 212
PspPI GGNCC 2 cut(s) 534, 764
PspXI VCTCGAGB 1 cut(s) 133
PsuI RGATCY 3 cut(s) 194, 226, 862
RsaI GTAC 6 cut(s) 359, 393, 604, 679, 804, 944
RsaNI GTAC 6 cut(s) 358, 392, 603, 678, 803, 943
RseI CAYNNNNRTG 1 cut(s) 909
SaqAI TTAA 1 cut(s) 315
Sau96I GGNCC 2 cut(s) 534, 764
ScaI AGTACT 2 cut(s) 393, 604
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 14, 532
SduI GDGCHC 2 cut(s) 32, 596
SfaNI GCATC 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 133
SinI GGWCC 1 cut(s) 534
SlaI CTCGAG 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 4 cut(s) 85, 526, 622, 734
SsiI CCGC 4 cut(s) 78, 398, 426, 537
SspI AATATT 2 cut(s) 328, 439
SspMI CTAG 4 cut(s) 207, 395, 597, 800
StyD4I CCNGG 2 cut(s) 12, 530
StyI CCWWGG 2 cut(s) 206, 551
TaaI ACNGT 2 cut(s) 148, 761
TaiI ACGT 1 cut(s) 959
TaqI TCGA 4 cut(s) 134, 375, 560, 815
TasI AATT 4 cut(s) 85, 526, 622, 734
TatI WGTACW 5 cut(s) 357, 391, 602, 802, 942
TfiI GAWTC 2 cut(s) 776, 796
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 577, 687
TspDTI ATGAA 6 cut(s) 221, 232, 323, 630, 727, 927
TspGWI ACGGA 2 cut(s) 81, 701
TspRI CASTG 2 cut(s) 577, 687
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 2 cut(s) 526, 734
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 663
XhoI CTCGAG 1 cut(s) 133
XmaJI CCTAGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 4 cut(s) 207, 395, 597, 800
ZrmI AGTACT 2 cut(s) 393, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.