RLG00000024868
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013953
Physical Location & Seq
Reverse (-)
39898499 .. 39900023
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024868

Sequence Viewer

Length: 1059 bp
ATGGAGGGGATGAGCGGCGAGTCTGAGTGCTCGAAGACAAGTCCCTCAGATGACCGAAATGAGGAAGGAAGTGAGAGTGGAGAGAACTACGATGGCGAAATCAGTAAGCCCAAAAACAATGGAGGAAGCTCAAGCAACAGCACGGTAGAAGAAAGTGATCAGAAAAAGGGATCGGTGCGACCCTATGTTAGATCCAAGATGCCAAGGCTCAGGTGGACACCGGATCTCCATCTTCGCTTTGTTCACGCCGTGGAGAGGCTCGGAGGACAAGATAGAGCTACACCAAAGATGGTTCTTCAGCTTATGAACATCAAGGGGCTAAGTATTGCACATGTCAAGAGCCATTTACAGATGTATAGAAGCAAGAAGATCGACGATGCAGGCCAAGTGATAGCAGATCAAGGACATCATCTTGCTGAATGTGGAGATAAAAATATATACAACCTCAGCCAACTTCCCATGCTTCAAGGATACAACCGAAGCCACATGAGTACCAGCTTCAGATATGGATACGGTGATGCCAATTCTTGGAGTAATAGTGCTTATGAGAACTTGAGGCATCCAAGAAGTACTGGTGGAATATTTCAAGGCACAATGGCGGAGAAGCTCTTTGGTAGCAGTACTACAACTAGCAACTGGAATAGTACTGCTTACAGCAATTTCCGGACAAGCTCCGAACAAGTACCAACTTGGATAACTCATACACTCAAAGACGAATGCAGCCAATTGTATAACATTCGTCGACATTCCTTGCAAGCACATCAAACTAGGCAGAGTCTCATTGATCATCTTAATCCCACAACCCATGTGCAACCCAAAGCAAAGGATCACTTTACAAGTTTGAGCAGCACACCAACCAATCTACAAGAGTTGAAGACGTTGAAAAGGAAGGCTTCGGATTGCGATCTTGATTTAGATCTGTCTCTCAGGCTAACAACGAAGAAGAATGACGAGAGTCCAAGAAGTACTACTATCAGGGACGATGAAGTTGATTGCACTAGTCTCTCTCTGTCCTTGTACTCACCGGCATCAGCAAAAATCAGAAGGGTGGAGGAATAA

Protein Analysis

353

Amino Acids

39.52

Weight (kDa)

8.18

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 69 - 120 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 528
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 742
AccIII TCCGGA 1 cut(s) 663
AciI CCGC 2 cut(s) 15, 599
AclWI GGATC 4 cut(s) 178, 186, 231, 834
AcuI CTGAAG 2 cut(s) 281, 484
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 7 cut(s) 493, 571, 622, 646, 684, 967, 1019
AfiI CCNNNNNNNGG 3 cut(s) 61, 255, 528
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 4 cut(s) 467, 587, 874, 883
AhlI ACTAGT 1 cut(s) 998
AluBI AGCT 6 cut(s) 129, 278, 301, 498, 607, 672
AluI AGCT 6 cut(s) 129, 278, 301, 498, 607, 672
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 3 cut(s) 782, 927, 1007
AlwI GGATC 4 cut(s) 178, 186, 231, 834
Aor13HI TCCGGA 1 cut(s) 663
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 2 cut(s) 720, 846
AsuHPI GGTGA 2 cut(s) 527, 1014
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BbsI GAAGAC 2 cut(s) 41, 881
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 732, 858
BccI CCATC 3 cut(s) 86, 237, 283
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciVI GTATCC 2 cut(s) 464, 503
BclI TGATCA 2 cut(s) 157, 784
BcoDI GTCTC 3 cut(s) 782, 927, 1007
BcuI ACTAGT 1 cut(s) 998
BfaI CTAG 3 cut(s) 630, 768, 999
BfuI GTATCC 2 cut(s) 464, 503
BglII AGATCT 1 cut(s) 916
BisI GCNGC 3 cut(s) 16, 721, 847
BlsI GCNGC 3 cut(s) 17, 722, 848
BmcAI AGTACT 4 cut(s) 571, 622, 646, 967
BmsI GCATC 5 cut(s) 189, 367, 508, 568, 1037
BoxI GACNNNNGTC 1 cut(s) 954
BpiI GAAGAC 2 cut(s) 41, 881
Bpu10I CCTNAGC 2 cut(s) 209, 446
BpuEI CTTGAG 2 cut(s) 115, 574
BsaBI GATNNNNATC 3 cut(s) 228, 903, 915
BsaJI CCNNGG 2 cut(s) 203, 249
BsaWI WCCGGW 2 cut(s) 220, 663
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 523, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 255, 528
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 2 cut(s) 577, 641
Bse8I GATNNNNATC 3 cut(s) 228, 903, 915
BseAI TCCGGA 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 203, 249
BseGI GGATG 2 cut(s) 15, 559
BseJI GATNNNNATC 3 cut(s) 228, 903, 915
BseLI CCNNNNNNNGG 3 cut(s) 61, 255, 528
BseMII CTCAG 5 cut(s) 15, 60, 223, 460, 940
BseNI ACTGG 2 cut(s) 577, 641
BseXI GCAGC 2 cut(s) 732, 858
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 221, 664, 1025
BslFI GGGAC 2 cut(s) 27, 992
BslI CCNNNNNNNGG 3 cut(s) 61, 255, 528
BsmAI GTCTC 3 cut(s) 782, 927, 1007
BsmFI GGGAC 2 cut(s) 27, 992
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 663
BspACI CCGC 2 cut(s) 15, 599
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 5 cut(s) 16, 59, 222, 459, 939
BspEI TCCGGA 1 cut(s) 663
BspPI GGATC 4 cut(s) 178, 186, 231, 834
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 2 cut(s) 577, 641
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 2 cut(s) 203, 249
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 145, 515
BstC8I GCNNGC 2 cut(s) 382, 756
BstDEI CTNAG 6 cut(s) 24, 46, 209, 320, 446, 926
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 15, 559
BstMAI GTCTC 3 cut(s) 782, 927, 1007
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 954
BstV1I GCAGC 2 cut(s) 732, 858
BstV2I GAAGAC 2 cut(s) 41, 881
BstX2I RGATCY 3 cut(s) 191, 223, 916
BstYI RGATCY 3 cut(s) 191, 223, 916
BsuI GTATCC 2 cut(s) 464, 503
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 15, 559
Cac8I GCNNGC 2 cut(s) 382, 756
Cfr10I RCCGGY 1 cut(s) 1024
Csp6I GTAC 7 cut(s) 492, 570, 621, 645, 683, 966, 1018
CviAII CATG 4 cut(s) 332, 460, 487, 806
CviQI GTAC 7 cut(s) 492, 570, 621, 645, 683, 966, 1018
DdeI CTNAG 6 cut(s) 24, 46, 209, 320, 446, 926
DraIII CACNNNGTG 1 cut(s) 250
EciI GGCGGA 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 281, 484
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 335, 463, 490, 809
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 877, 909
FaqI GGGAC 2 cut(s) 27, 992
FatI CATG 4 cut(s) 331, 459, 486, 805
FbaI TGATCA 2 cut(s) 157, 784
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 3 cut(s) 16, 721, 847
FokI GGATG 2 cut(s) 22, 546
Fsp4HI GCNGC 3 cut(s) 16, 721, 847
FspBI CTAG 3 cut(s) 630, 768, 999
GluI GCNGC 3 cut(s) 16, 721, 847
HaeIII GGCC 1 cut(s) 384
HapII CCGG 3 cut(s) 221, 664, 1025
Hin1II CATG 4 cut(s) 335, 463, 490, 809
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 3 cut(s) 20, 775, 955
HpaII CCGG 3 cut(s) 221, 664, 1025
HphI GGTGA 2 cut(s) 527, 1014
Hpy166II GTNNAC 3 cut(s) 216, 244, 743
Hpy188I TCNGA 8 cut(s) 25, 49, 162, 263, 503, 676, 898, 1043
Hpy188III TCNNGA 3 cut(s) 337, 664, 908
Hpy8I GTNNAC 3 cut(s) 216, 244, 743
Hpy99I CGWCG 2 cut(s) 377, 744
HpyAV CCTTC 3 cut(s) 59, 883, 1038
HpyCH4III ACNGT 2 cut(s) 145, 515
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 6 cut(s) 329, 380, 720, 754, 811, 996
HpyF3I CTNAG 6 cut(s) 24, 46, 209, 320, 446, 926
HpySE526I ACGT 1 cut(s) 878
Hsp92II CATG 4 cut(s) 335, 463, 490, 809
Kpn2I TCCGGA 1 cut(s) 663
Ksp22I TGATCA 2 cut(s) 157, 784
LmnI GCTCC 1 cut(s) 677
Lsp1109I GCAGC 2 cut(s) 732, 858
LweI GCATC 5 cut(s) 189, 367, 508, 568, 1037
MaeI CTAG 3 cut(s) 630, 768, 999
MaeII ACGT 1 cut(s) 878
MbiI CCGCTC 1 cut(s) 15
MboII GAAGA 8 cut(s) 46, 161, 224, 287, 379, 886, 952, 955
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 3 cut(s) 191, 223, 916
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 3 cut(s) 523, 658, 725
MlyI GAGTC 3 cut(s) 29, 784, 964
MnlI CCTC 8 cut(s) 55, 55, 116, 249, 257, 455, 549, 1045
MroI TCCGGA 1 cut(s) 663
MseI TTAA 1 cut(s) 792
MspI CCGG 3 cut(s) 221, 664, 1025
MunI CAATTG 1 cut(s) 725
Mva1269I GAATGC 1 cut(s) 722
NlaIII CATG 4 cut(s) 335, 463, 490, 809
NspI RCATGY 1 cut(s) 335
PciI ACATGT 1 cut(s) 331
PctI GAATGC 1 cut(s) 722
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 3 cut(s) 17, 722, 848
PleI GAGTC 3 cut(s) 28, 783, 963
PpsI GAGTC 3 cut(s) 28, 783, 963
PscI ACATGT 1 cut(s) 331
PshAI GACNNNNGTC 1 cut(s) 954
PsuI RGATCY 3 cut(s) 191, 223, 916
RsaI GTAC 7 cut(s) 493, 571, 622, 646, 684, 967, 1019
RsaNI GTAC 7 cut(s) 492, 570, 621, 645, 683, 966, 1018
SalI GTCGAC 1 cut(s) 741
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 3 cut(s) 16, 721, 847
ScaI AGTACT 4 cut(s) 571, 622, 646, 967
SchI GAGTC 3 cut(s) 29, 784, 964
SduI GDGCHC 1 cut(s) 32
SetI ASST 9 cut(s) 131, 215, 280, 303, 447, 500, 609, 674, 881
SfaNI GCATC 5 cut(s) 189, 367, 508, 568, 1037
SmlI CTYRAG 2 cut(s) 130, 553
SmoI CTYRAG 2 cut(s) 130, 553
SpeI ACTAGT 1 cut(s) 998
Sse9I AATT 3 cut(s) 523, 658, 725
SsiI CCGC 2 cut(s) 15, 599
SspI AATATT 1 cut(s) 582
SspMI CTAG 3 cut(s) 630, 768, 999
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 145, 515
TaiI ACGT 1 cut(s) 881
TaqI TCGA 3 cut(s) 32, 372, 742
TaqII GACCGA 1 cut(s) 69
TasI AATT 3 cut(s) 523, 658, 725
TatI WGTACW 5 cut(s) 569, 620, 644, 965, 1017
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TseI GCWGC 2 cut(s) 720, 846
TspDTI ATGAA 2 cut(s) 320, 999
Van91I CCANNNNNTGG 1 cut(s) 528
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 742
XspI CTAG 3 cut(s) 630, 768, 999
ZrmI AGTACT 4 cut(s) 571, 622, 646, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.