Rw3G009660
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013953
Physical Location & Seq
Forward (+)
9235366 .. 9237226
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009660.1

Sequence Viewer

Length: 1041 bp
ATGGAGGGGATGAGCGGCGAGTCTGAGTGCTCGAAGACAAGTCCCTCCGATGACCGAAATGAGGAAGGAAGTGAGAGTGGAGAGAACTACGATGGCGAAATCAGTAAGCCCAAAAACAATGGAGGAAGCTCAAGCAACAGCACGGTAGAAGAAAGTGATCAGAAAAAGGGATCGGTGCGACCCTATGTTAGATCCAAGATGCCAAGGCTCAGGTGGACACCGGATCTCCATCTTCGCTTTGTTCACGCCGTGGAGAGGCTCGGAGGACAAGATAGAGCTACACCAAAGATGGTTCTTCAGCTTATGAACATCAAGGGGCTAAGTATTGCACATGTCAAGAGCCATTTACAGATGTATAGAAGCAAGAAGATCGACGATGCAGGCCAAGCAGATCAAGGACACCATCTTGCTGAATGTGGAGATAAAAATATATACAACCTCAGCCAACTTCCCATGCTTCAAGGATACAACCGAAGCCACATGAGTACCAGCTTCAGATATGGATACGGTGATGCCAATTCTTGGAGTAATAGTGCTTATGAGAACTTGAGGCATCCAAGAATATTTCAAGGCACAATGACGGAGAAGCTCTTTGGTAGCAGTACTACAACTAGCAACTGGAATAGTACTGCTTACAGCAATTTCCGGACAAGCTCCGAACAAGTACCAACTTGGATAACTCATACACTCAAAGACGAATGCAATCAATTGTATAACATTCGTCGACAGTCCTTGCAAGCACATCAAACTAGGCAGAGTCTCATTGATCATCTTAATCCCACAACCCATGTGCAACCCAAAGAAAAGGATCACTTTACAAGTTTGAGCAGCACACCAACCAATCTACAAGAGTTGAAGACGTTGAAAAGGAAGGCTTCGGATTGCGATCTTGATTTAGATCTGTCTCTCAGGCTAACAACGAAGAAGAATGACGAGAGTCCGAGAAGTACTACTATGAGGGACGATGAAGTTGATTGCACTAGTCTTTCTCTGTCATTGTACTCACCGGCATCGGCAAAAATCAGAAGGGTGGAGGAATAA

Protein Analysis

346

Amino Acids

39.13

Weight (kDa)

7.71

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 69 - 120 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 522
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 724
AccIII TCCGGA 1 cut(s) 645
AciI CCGC 1 cut(s) 15
AclWI GGATC 4 cut(s) 178, 186, 231, 816
AcuI CTGAAG 2 cut(s) 281, 478
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 6 cut(s) 487, 604, 628, 666, 949, 1001
AfiI CCNNNNNNNGG 3 cut(s) 61, 255, 522
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 4 cut(s) 461, 569, 856, 865
AhlI ACTAGT 1 cut(s) 980
AluBI AGCT 6 cut(s) 129, 278, 301, 492, 589, 654
AluI AGCT 6 cut(s) 129, 278, 301, 492, 589, 654
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 764, 909
AlwI GGATC 4 cut(s) 178, 186, 231, 816
Aor13HI TCCGGA 1 cut(s) 645
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 828
AsuHPI GGTGA 2 cut(s) 521, 996
BaeI ACNNNNGTAYC 2 cut(s) 469, 502
BbsI GAAGAC 2 cut(s) 41, 863
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 840
BccI CCATC 4 cut(s) 86, 237, 283, 411
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciVI GTATCC 2 cut(s) 458, 497
BclI TGATCA 2 cut(s) 157, 766
BcoDI GTCTC 2 cut(s) 764, 909
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 3 cut(s) 612, 750, 981
BfuI GTATCC 2 cut(s) 458, 497
BglII AGATCT 1 cut(s) 898
BisI GCNGC 2 cut(s) 16, 829
BlsI GCNGC 2 cut(s) 17, 830
BmcAI AGTACT 3 cut(s) 604, 628, 949
BmsI GCATC 5 cut(s) 189, 367, 502, 562, 1019
BoxI GACNNNNGTC 1 cut(s) 936
BpiI GAAGAC 2 cut(s) 41, 863
Bpu10I CCTNAGC 2 cut(s) 209, 440
BpuEI CTTGAG 2 cut(s) 115, 568
BsaBI GATNNNNATC 3 cut(s) 228, 885, 897
BsaJI CCNNGG 2 cut(s) 203, 249
BsaWI WCCGGW 2 cut(s) 220, 645
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 517, 547
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 255, 522
Bse118I RCCGGY 1 cut(s) 1006
Bse1I ACTGG 1 cut(s) 623
Bse8I GATNNNNATC 3 cut(s) 228, 885, 897
BseAI TCCGGA 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 203, 249
BseGI GGATG 2 cut(s) 15, 553
BseJI GATNNNNATC 3 cut(s) 228, 885, 897
BseLI CCNNNNNNNGG 3 cut(s) 61, 255, 522
BseMII CTCAG 4 cut(s) 15, 223, 454, 922
BseNI ACTGG 1 cut(s) 623
BseXI GCAGC 1 cut(s) 840
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 221, 646, 1007
BslFI GGGAC 2 cut(s) 27, 974
BslI CCNNNNNNNGG 3 cut(s) 61, 255, 522
BsmAI GTCTC 2 cut(s) 764, 909
BsmFI GGGAC 2 cut(s) 27, 974
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 645
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 4 cut(s) 16, 222, 453, 921
BspEI TCCGGA 1 cut(s) 645
BspPI GGATC 4 cut(s) 178, 186, 231, 816
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 1006
BsrI ACTGG 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 2 cut(s) 203, 249
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 145, 509, 729
BstC8I GCNNGC 2 cut(s) 382, 738
BstDEI CTNAG 5 cut(s) 24, 209, 320, 440, 908
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 15, 553
BstMAI GTCTC 2 cut(s) 764, 909
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 335
BstPAI GACNNNNGTC 1 cut(s) 936
BstV1I GCAGC 1 cut(s) 840
BstV2I GAAGAC 2 cut(s) 41, 863
BstX2I RGATCY 3 cut(s) 191, 223, 898
BstYI RGATCY 3 cut(s) 191, 223, 898
BsuI GTATCC 2 cut(s) 458, 497
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 15, 553
Cac8I GCNNGC 2 cut(s) 382, 738
Cfr10I RCCGGY 1 cut(s) 1006
Csp6I GTAC 6 cut(s) 486, 603, 627, 665, 948, 1000
CviAII CATG 4 cut(s) 332, 454, 481, 788
CviQI GTAC 6 cut(s) 486, 603, 627, 665, 948, 1000
DdeI CTNAG 5 cut(s) 24, 209, 320, 440, 908
DraIII CACNNNGTG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 281, 478
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 4 cut(s) 335, 457, 484, 791
FalI AAGNNNNNCTT 4 cut(s) 797, 829, 859, 891
FaqI GGGAC 2 cut(s) 27, 974
FatI CATG 4 cut(s) 331, 453, 480, 787
FbaI TGATCA 2 cut(s) 157, 766
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 2 cut(s) 16, 829
FokI GGATG 2 cut(s) 22, 540
Fsp4HI GCNGC 2 cut(s) 16, 829
FspBI CTAG 3 cut(s) 612, 750, 981
GluI GCNGC 2 cut(s) 16, 829
HaeIII GGCC 1 cut(s) 384
HapII CCGG 3 cut(s) 221, 646, 1007
Hin1II CATG 4 cut(s) 335, 457, 484, 791
HincII GTYRAC 1 cut(s) 725
HindII GTYRAC 1 cut(s) 725
HinfI GANTC 3 cut(s) 20, 757, 937
HpaII CCGG 3 cut(s) 221, 646, 1007
HphI GGTGA 2 cut(s) 521, 996
Hpy166II GTNNAC 3 cut(s) 216, 244, 725
Hpy188I TCNGA 9 cut(s) 25, 49, 162, 263, 497, 658, 880, 942, 1025
Hpy188III TCNNGA 3 cut(s) 337, 646, 890
Hpy8I GTNNAC 3 cut(s) 216, 244, 725
Hpy99I CGWCG 2 cut(s) 377, 726
HpyAV CCTTC 3 cut(s) 59, 865, 1020
HpyCH4III ACNGT 3 cut(s) 145, 509, 729
HpyCH4IV ACGT 1 cut(s) 860
HpyCH4V TGCA 6 cut(s) 329, 380, 702, 736, 793, 978
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 5 cut(s) 24, 209, 320, 440, 908
HpySE526I ACGT 1 cut(s) 860
Hsp92II CATG 4 cut(s) 335, 457, 484, 791
Kpn2I TCCGGA 1 cut(s) 645
Ksp22I TGATCA 2 cut(s) 157, 766
LmnI GCTCC 1 cut(s) 659
LpnPI CCDG 8 cut(s) 196, 234, 366, 502, 604, 659, 895, 1020
Lsp1109I GCAGC 1 cut(s) 840
LweI GCATC 5 cut(s) 189, 367, 502, 562, 1019
MaeI CTAG 3 cut(s) 612, 750, 981
MaeII ACGT 1 cut(s) 860
MbiI CCGCTC 1 cut(s) 15
MboII GAAGA 8 cut(s) 46, 161, 224, 287, 379, 868, 934, 937
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 3 cut(s) 191, 223, 898
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 3 cut(s) 517, 640, 707
MlyI GAGTC 3 cut(s) 29, 766, 946
MnlI CCTC 9 cut(s) 55, 55, 116, 249, 257, 449, 543, 951, 1027
MroI TCCGGA 1 cut(s) 645
MseI TTAA 1 cut(s) 774
MspI CCGG 3 cut(s) 221, 646, 1007
MunI CAATTG 1 cut(s) 707
Mva1269I GAATGC 1 cut(s) 704
MwoI GCNNNNNNNGC 1 cut(s) 386
NlaIII CATG 4 cut(s) 335, 457, 484, 791
NspI RCATGY 1 cut(s) 335
PciI ACATGT 1 cut(s) 331
PctI GAATGC 1 cut(s) 704
PflMI CCANNNNNTGG 1 cut(s) 522
PkrI GCNGC 2 cut(s) 17, 830
PleI GAGTC 3 cut(s) 28, 765, 945
PpsI GAGTC 3 cut(s) 28, 765, 945
PscI ACATGT 1 cut(s) 331
PshAI GACNNNNGTC 1 cut(s) 936
PsuI RGATCY 3 cut(s) 191, 223, 898
RsaI GTAC 6 cut(s) 487, 604, 628, 666, 949, 1001
RsaNI GTAC 6 cut(s) 486, 603, 627, 665, 948, 1000
SalI GTCGAC 1 cut(s) 723
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 2 cut(s) 16, 829
ScaI AGTACT 3 cut(s) 604, 628, 949
SchI GAGTC 3 cut(s) 29, 766, 946
SduI GDGCHC 1 cut(s) 32
SetI ASST 9 cut(s) 131, 215, 280, 303, 441, 494, 591, 656, 863
SfaNI GCATC 5 cut(s) 189, 367, 502, 562, 1019
SmlI CTYRAG 2 cut(s) 130, 547
SmoI CTYRAG 2 cut(s) 130, 547
SpeI ACTAGT 1 cut(s) 980
Sse9I AATT 3 cut(s) 517, 640, 707
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 564
SspMI CTAG 3 cut(s) 612, 750, 981
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 145, 509, 729
TaiI ACGT 1 cut(s) 863
TaqI TCGA 3 cut(s) 32, 372, 724
TaqII GACCGA 1 cut(s) 69
TasI AATT 3 cut(s) 517, 640, 707
TatI WGTACW 4 cut(s) 602, 626, 947, 999
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TseI GCWGC 1 cut(s) 828
TspDTI ATGAA 2 cut(s) 320, 981
TspGWI ACGGA 1 cut(s) 596
Van91I CCANNNNNTGG 1 cut(s) 522
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 724
XspI CTAG 3 cut(s) 612, 750, 981
ZrmI AGTACT 3 cut(s) 604, 628, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.