MD12G1174900.v1.1
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0013953
Physical Location & Seq
Reverse (-)
25532942 .. 25534970
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1174900.v1.1.491

Sequence Viewer

Length: 996 bp
ATGATGGGGAGCCAGGGAGGCTCTGAGTGCTCAAAGACAAGTCCCTCGGATAAACAAAATGAGGATGGAAGCGAAAGCGGGGAGAATTACGGCAATGGAGGAAGTAGTAAGCCGAAAAACAACGGAGGAAGCTCAAGCAACAGCACAGTTGAAGAAGGTGATCAAAAGAAGGTATCAGTTAGACCTTATGTTAGATCCAAGATGCCTAGGCTCCGATGGACACGGAATCTTCATCTTCGTTTCATCCACGCCATGGAGAGGCTTGGTGGTCAAGATAGAGCTACACCAAAGTTGGTTCTTCAGCTGATGAACATTAAGGGACTAAGTATTGCACATGTCAAGAGCCATTTACAGATGTATAGAAGCAAGAAGATCAACGACGCAGGCCAAGTACTACCGGATCGTCAAGGCCATCTTGGTGAATGTGGAGATAAAAATATTTATAACCTCAGCCAACTCCCCATGCTTCAAGGATATAAGTTATATAACCGACGCCACACTACCAGCTTCAGATATGGATCATACGGCGATGCGAATTCTTGGAATGCGTTTGAAAATCCAAGGTTTTCGAGAAGTAGCACTGGCTTTCAAGGCAACTGGAGCACTAGTAGTACTAGTAATAATGCTTACAATTATCTGACAAGTTGTTCATTTGGTGATCATCCACAATCGTCCTGGATTACTCGTACGCTGAAAGAAGATTGCCAACTCTATAATATCCGTGAGTCCTTGAAACCAGGGGAACTCATCACAAGTTTCAACACCAACCATGGCCCTTTTCAAGATTTCGACACTGTAACCAAGAATCTAGTACAAGATCAGTTGAAGACGTTGAAACGAAAGGCTTCGGATTGCCACGATCTTGATTTGGATCTGTCTCTCAGGCTAACATCAAGGAAGAATGATGAGGACCATACTCATGAAGTTGATAGTAGTCTGTCACTGTGTTTGTACTCACCACCCACGTCCTCAAAGCTCAGAAGTTTGAAGGAATGA

Protein Analysis

332

Amino Acids

37.23

Weight (kDa)

9.16

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 70 - 121 8.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 1 cut(s) 78
AclWI GGATC 4 cut(s) 189, 408, 526, 879
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 2 cut(s) 284, 493
AcyI GRCGYC 1 cut(s) 493
AfaI GTAC 5 cut(s) 393, 613, 688, 813, 953
AfiI CCNNNNNNNGG 2 cut(s) 253, 258
AflIII ACRYGT 1 cut(s) 334
AhlI ACTAGT 2 cut(s) 605, 614
AjiI CACGTC 1 cut(s) 966
AjnI CCWGG 3 cut(s) 12, 674, 736
AluBI AGCT 5 cut(s) 132, 281, 304, 507, 976
AluI AGCT 5 cut(s) 132, 281, 304, 507, 976
Alw21I GWGCWC 2 cut(s) 32, 605
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 4 cut(s) 189, 408, 526, 879
AoxI GGCC 3 cut(s) 385, 409, 772
ApoI RAATTY 1 cut(s) 535
Asp700I GAANNNNTTC 1 cut(s) 844
AspA2I CCTAGG 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 773, 910
AsuHPI GGTGA 4 cut(s) 170, 431, 668, 948
AvaII GGWCC 1 cut(s) 910
AvrII CCTAGG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 833
Bbv12I GWGCWC 2 cut(s) 32, 605
BbvCI CCTCAGC 1 cut(s) 449
BccI CCATC 3 cut(s) 59, 210, 420
BceAI ACGGC 2 cut(s) 106, 541
BciT130I CCWGG 3 cut(s) 14, 676, 738
BclI TGATCA 2 cut(s) 160, 658
BcoDI GTCTC 1 cut(s) 882
BcuI ACTAGT 2 cut(s) 605, 614
BfaI CTAG 4 cut(s) 207, 606, 615, 809
BglI GCCNNNNNGGC 1 cut(s) 18
BlnI CCTAGG 1 cut(s) 206
BmcAI AGTACT 2 cut(s) 393, 613
Bme1390I CCNGG 3 cut(s) 14, 676, 738
Bme18I GGWCC 1 cut(s) 910
BmgBI CACGTC 1 cut(s) 966
BmgT120I GGNCC 2 cut(s) 773, 910
BmiI GGNNCC 2 cut(s) 11, 212
BmrFI CCNGG 3 cut(s) 14, 676, 738
BmsI GCATC 2 cut(s) 192, 520
BpiI GAAGAC 1 cut(s) 833
BpmI CTGGAG 1 cut(s) 619
Bpu10I CCTNAGC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 118
BsaBI GATNNNNATC 2 cut(s) 517, 870
BsaHI GRCGYC 1 cut(s) 493
BsaJI CCNNGG 7 cut(s) 13, 45, 206, 252, 560, 737, 769
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 258
Bse1I ACTGG 2 cut(s) 586, 602
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 2 cut(s) 517, 870
BseBI CCWGG 3 cut(s) 14, 676, 738
BseDI CCNNGG 7 cut(s) 13, 45, 206, 252, 560, 737, 769
BseGI GGATG 3 cut(s) 70, 243, 661
BseJI GATNNNNATC 2 cut(s) 517, 870
BseLI CCNNNNNNNGG 2 cut(s) 253, 258
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 4 cut(s) 15, 463, 895, 991
BseNI ACTGG 2 cut(s) 586, 602
BshFI GGCC 3 cut(s) 387, 411, 774
BsiHKAI GWGCWC 2 cut(s) 32, 605
BsiSI CCGG 1 cut(s) 398
BsiWI CGTACG 1 cut(s) 686
BslFI GGGAC 2 cut(s) 27, 333
BslI CCNNNNNNNGG 2 cut(s) 253, 258
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 2 cut(s) 27, 333
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 3 cut(s) 387, 411, 774
Bsp1286I GDGCHC 2 cut(s) 32, 605
Bsp143I GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
Bsp19I CCATGG 2 cut(s) 252, 769
BspACI CCGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 387, 411, 774
BspCNI CTCAG 4 cut(s) 16, 462, 894, 990
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 2 cut(s) 11, 212
BspPI GGATC 4 cut(s) 189, 408, 526, 879
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 2 cut(s) 586, 602
BssECI CCNNGG 7 cut(s) 13, 45, 206, 252, 560, 737, 769
BssMI GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
BssNI GRCGYC 1 cut(s) 493
BssT1I CCWWGG 4 cut(s) 206, 252, 560, 769
Bst2UI CCWGG 3 cut(s) 14, 676, 738
Bst4CI ACNGT 3 cut(s) 148, 796, 945
BstACI GRCGYC 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 5 cut(s) 24, 323, 449, 881, 977
BstDSI CCRYGG 2 cut(s) 252, 769
BstF5I GGATG 3 cut(s) 70, 243, 661
BstKTI GATC 9 cut(s) 163, 197, 375, 403, 521, 661, 820, 862, 874
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
BstMWI GCNNNNNNNGC 4 cut(s) 18, 27, 591, 600
BstNI CCWGG 3 cut(s) 14, 676, 738
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 12, 674, 736
BstV2I GAAGAC 1 cut(s) 833
BstX2I RGATCY 2 cut(s) 194, 871
BstYI RGATCY 2 cut(s) 194, 871
BsuRI GGCC 3 cut(s) 387, 411, 774
BtgI CCRYGG 2 cut(s) 252, 769
BtgZI GCGATG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 966
BtsCI GGATG 3 cut(s) 70, 243, 661
BtsIMutI CAGTG 3 cut(s) 579, 792, 941
Cac8I GCNNGC 1 cut(s) 385
CciI TCATGA 1 cut(s) 919
Cfr13I GGNCC 2 cut(s) 773, 910
CseI GACGC 2 cut(s) 389, 501
Csp6I GTAC 5 cut(s) 392, 612, 687, 812, 952
CviAII CATG 5 cut(s) 253, 335, 463, 770, 920
CviQI GTAC 5 cut(s) 392, 612, 687, 812, 952
DdeI CTNAG 5 cut(s) 24, 323, 449, 881, 977
DpnI GATC 9 cut(s) 162, 196, 374, 402, 520, 660, 819, 861, 873
DpnII GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
Eco130I CCWWGG 4 cut(s) 206, 252, 560, 769
Eco47I GGWCC 1 cut(s) 910
Eco57I CTGAAG 2 cut(s) 284, 493
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 12, 674, 736
EcoT14I CCWWGG 4 cut(s) 206, 252, 560, 769
ErhI CCWWGG 4 cut(s) 206, 252, 560, 769
FaeI CATG 5 cut(s) 256, 338, 466, 773, 923
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 2 cut(s) 27, 333
FatI CATG 5 cut(s) 252, 334, 462, 769, 919
FauI CCCGC 1 cut(s) 71
FbaI TGATCA 2 cut(s) 160, 658
FokI GGATG 3 cut(s) 77, 230, 648
FspBI CTAG 4 cut(s) 207, 606, 615, 809
GsuI CTGGAG 1 cut(s) 619
HaeIII GGCC 3 cut(s) 387, 411, 774
HapII CCGG 1 cut(s) 398
HgaI GACGC 2 cut(s) 389, 501
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 5 cut(s) 256, 338, 466, 773, 923
HinfI GANTC 3 cut(s) 226, 725, 805
HpaII CCGG 1 cut(s) 398
HphI GGTGA 4 cut(s) 170, 431, 668, 948
Hpy188I TCNGA 7 cut(s) 25, 49, 215, 512, 639, 850, 980
Hpy188III TCNNGA 6 cut(s) 272, 340, 570, 782, 863, 920
Hpy99I CGWCG 2 cut(s) 383, 495
HpyAV CCTTC 3 cut(s) 149, 163, 982
HpyCH4III ACNGT 3 cut(s) 148, 796, 945
HpyCH4IV ACGT 2 cut(s) 830, 965
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 27, 591, 600
HpyF3I CTNAG 5 cut(s) 24, 323, 449, 881, 977
HpySE526I ACGT 2 cut(s) 830, 965
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 5 cut(s) 256, 338, 466, 773, 923
Ksp22I TGATCA 2 cut(s) 160, 658
Kzo9I GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
LmnI GCTCC 3 cut(s) 9, 216, 600
LweI GCATC 2 cut(s) 192, 520
MaeI CTAG 4 cut(s) 207, 606, 615, 809
MaeII ACGT 2 cut(s) 830, 965
MaeIII GTNAC 2 cut(s) 796, 939
MalI GATC 9 cut(s) 162, 196, 374, 402, 520, 660, 819, 861, 873
MboI GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
MboII GAAGA 8 cut(s) 164, 221, 227, 290, 382, 710, 838, 910
MflI RGATCY 2 cut(s) 194, 871
MhlI GDGCHC 2 cut(s) 32, 605
MluCI AATT 3 cut(s) 85, 535, 631
MlyI GAGTC 1 cut(s) 734
MnlI CCTC 9 cut(s) 11, 55, 55, 92, 119, 252, 458, 901, 979
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 417, 918
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 14, 676, 738
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 3 cut(s) 14, 676, 738
MwoI GCNNNNNNNGC 4 cut(s) 18, 27, 591, 600
NcoI CCATGG 2 cut(s) 252, 769
NdeII GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
NlaIII CATG 5 cut(s) 256, 338, 466, 773, 923
NlaIV GGNNCC 2 cut(s) 11, 212
NmuCI GTSAC 1 cut(s) 939
NspI RCATGY 1 cut(s) 338
PagI TCATGA 1 cut(s) 919
PciI ACATGT 1 cut(s) 334
PctI GAATGC 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 2 cut(s) 226, 805
Pfl23II CGTACG 1 cut(s) 686
PflMI CCANNNNNTGG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 674
PleI GAGTC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 733
PscI ACATGT 1 cut(s) 334
PsiI TTATAA 1 cut(s) 444
Psp6I CCWGG 3 cut(s) 12, 674, 736
PspGI CCWGG 3 cut(s) 12, 674, 736
PspLI CGTACG 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 11, 212
PspPI GGNCC 2 cut(s) 773, 910
PsuI RGATCY 2 cut(s) 194, 871
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 5 cut(s) 393, 613, 688, 813, 953
RsaNI GTAC 5 cut(s) 392, 612, 687, 812, 952
RseI CAYNNNNRTG 2 cut(s) 417, 918
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 9 cut(s) 160, 194, 372, 400, 518, 658, 817, 859, 871
Sau96I GGNCC 2 cut(s) 773, 910
ScaI AGTACT 2 cut(s) 393, 613
SchI GAGTC 1 cut(s) 734
ScrFI CCNGG 3 cut(s) 14, 676, 738
SduI GDGCHC 2 cut(s) 32, 605
SfaNI GCATC 2 cut(s) 192, 520
SinI GGWCC 1 cut(s) 910
SmiMI CAYNNNNRTG 2 cut(s) 417, 918
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 2 cut(s) 605, 614
Sse9I AATT 3 cut(s) 85, 535, 631
SsiI CCGC 1 cut(s) 78
SspI AATATT 1 cut(s) 439
SspMI CTAG 4 cut(s) 207, 606, 615, 809
StyD4I CCNGG 3 cut(s) 12, 674, 736
StyI CCWWGG 4 cut(s) 206, 252, 560, 769
TaaI ACNGT 3 cut(s) 148, 796, 945
TaiI ACGT 2 cut(s) 833, 968
TaqI TCGA 2 cut(s) 569, 789
TasI AATT 3 cut(s) 85, 535, 631
TatI WGTACW 4 cut(s) 391, 611, 811, 951
TfiI GAWTC 2 cut(s) 226, 805
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 3 cut(s) 586, 799, 948
TseFI GTSAC 1 cut(s) 939
Tsp45I GTSAC 1 cut(s) 939
TspDTI ATGAA 5 cut(s) 221, 232, 323, 639, 936
TspGWI ACGGA 3 cut(s) 138, 238, 710
TspRI CASTG 3 cut(s) 586, 799, 948
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 910
XapI RAATTY 1 cut(s) 535
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 672
XmaJI CCTAGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 4 cut(s) 207, 606, 615, 809
ZrmI AGTACT 2 cut(s) 393, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.