Rorug03G0055700
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013953
Physical Location & Seq
Forward (+)
4274280 .. 4277677
3398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0055700.1

Sequence Viewer

Length: 1164 bp
ATGGAAGTGAAAGCCAGAGCACCTGGGAAGGTCATACTGTCTGGTGAACATGCTGTGGTTCATGGATCTACGGCCGTCGCTGCCTCCATTGACCTCTGTACCTATGCAACTCTTCGCTTTCCCGCTCATTCTGATAATGATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTTCGTGGCCAGTTGTTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCTTGTCCGGCGGAGGCGATCAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCGGAGGCAAAAATCGGAATTGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGATTTAAGCCTGCGACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTCATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCAAGTCTGGATTTCAGCCACCAAGGGTGGTTGGATTTTGGCGAAAGCGAACTTGACTTACTGAATAAATGGGCATTTGAAGGTGAGAAAATCATCCATGGAAGGCCATCTGGAATTGACAACACAGTCAGCACATATGGGAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCTAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTACAGAGAGGGCATTAAGGCATCCAGATGCTATGGCTTCTGTGTTTAACGCAGTTGATTCTATCAGCGCGGAATTGGCTACCATCATCCAATCAGAGGCCTCTGATGAAATCTCTGTAACCGAAAAGGAGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGGTCAGCCATGCTTCAATTGAAACCATTCTTCGAACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTTGCTATCAGCAATGGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Protein Analysis

387

Amino Acids

40.78

Weight (kDa)

5.46

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 125 - 211 1.1e-09 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 295 - 347 4.7e-07 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 617
AccB7I CCANNNNNTGG 1 cut(s) 928
AccBSI CCGCTC 1 cut(s) 125
AccII CGCG 1 cut(s) 818
AccIII TCCGGA 2 cut(s) 218, 310
AciI CCGC 5 cut(s) 123, 263, 444, 818, 1115
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 3 cut(s) 72, 188, 1116
AdeI CACNNNGTG 1 cut(s) 452
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 844, 928
AgsI TTSAA 5 cut(s) 296, 572, 948, 953, 1139
AjnI CCWGG 1 cut(s) 22
AloI GAACNNNNNNTCC 6 cut(s) 213, 245, 1008, 1040, 1119, 1151
AluBI AGCT 3 cut(s) 160, 895, 1007
AluI AGCT 3 cut(s) 160, 895, 1007
Alw21I GWGCWC 3 cut(s) 22, 162, 472
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 1007
Aor13HI TCCGGA 2 cut(s) 218, 310
AoxI GGCC 6 cut(s) 72, 188, 596, 732, 846, 1116
ApeKI GCWGC 2 cut(s) 80, 332
Asp700I GAANNNNTTC 1 cut(s) 957
AspLEI GCGC 1 cut(s) 818
AsuHPI GGTGA 2 cut(s) 56, 587
AsuII TTCGAA 1 cut(s) 964
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BalI TGGCCA 1 cut(s) 190
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 3 cut(s) 22, 162, 472
BbvI GCAGC 2 cut(s) 67, 319
BccI CCATC 5 cut(s) 134, 247, 607, 839, 892
BceAI ACGGC 2 cut(s) 59, 87
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 1077
BisI GCNGC 4 cut(s) 81, 333, 444, 1116
BlsI GCNGC 4 cut(s) 82, 334, 445, 1117
Bme1390I CCNGG 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 766, 778
BpmI CTGGAG 3 cut(s) 176, 357, 1106
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 5 cut(s) 23, 373, 514, 589, 910
BsaWI WCCGGW 2 cut(s) 218, 310
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 2 cut(s) 844, 928
Bse1I ACTGG 3 cut(s) 159, 191, 1089
Bse3DI GCAATG 2 cut(s) 1062, 1102
BseAI TCCGGA 2 cut(s) 218, 310
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 5 cut(s) 23, 373, 514, 589, 910
BseGI GGATG 4 cut(s) 585, 769, 834, 1157
BseLI CCNNNNNNNGG 2 cut(s) 844, 928
BseMI GCAATG 2 cut(s) 1062, 1102
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 3 cut(s) 159, 191, 1089
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 67, 319
Bsh1236I CGCG 1 cut(s) 818
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 6 cut(s) 74, 190, 598, 734, 848, 1118
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 3 cut(s) 22, 162, 472
BsiSI CCGG 3 cut(s) 219, 260, 311
BslI CCNNNNNNNGG 2 cut(s) 844, 928
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 6 cut(s) 74, 190, 598, 734, 848, 1118
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 3 cut(s) 22, 162, 472
Bsp13I TCCGGA 2 cut(s) 218, 310
Bsp143I GATC 4 cut(s) 65, 270, 639, 650
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 5 cut(s) 123, 263, 444, 818, 1115
BspANI GGCC 6 cut(s) 74, 190, 598, 734, 848, 1118
BspCNI CTCAG 1 cut(s) 497
BspEI TCCGGA 2 cut(s) 218, 310
BspFNI CGCG 1 cut(s) 818
BspMAI CTGCAG 1 cut(s) 1081
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 2 cut(s) 477, 885
BspT104I TTCGAA 1 cut(s) 964
BsrBI CCGCTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 1062, 1102
BsrI ACTGG 3 cut(s) 159, 191, 1089
BssECI CCNNGG 5 cut(s) 23, 373, 514, 589, 910
BssMI GATC 4 cut(s) 65, 270, 639, 650
BssT1I CCWWGG 4 cut(s) 373, 514, 589, 910
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 39, 394, 619
Bst6I CTCTTC 3 cut(s) 117, 477, 885
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 3 cut(s) 149, 484, 736
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 4 cut(s) 585, 769, 834, 1157
BstFNI CGCG 1 cut(s) 818
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 4 cut(s) 68, 273, 642, 653
BstMBI GATC 4 cut(s) 65, 270, 639, 650
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 5 cut(s) 80, 476, 740, 824, 1045
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 2 cut(s) 53, 685
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 1077
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 2 cut(s) 67, 319
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZI CGGCCG 1 cut(s) 72
BsuRI GGCC 6 cut(s) 74, 190, 598, 734, 848, 1118
BtgI CCRYGG 1 cut(s) 589
BtsCI GGATG 4 cut(s) 585, 769, 834, 1157
Cac8I GCNNGC 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 1007
CfoI GCGC 1 cut(s) 818
Csp6I GTAC 1 cut(s) 99
CviAII CATG 6 cut(s) 50, 62, 590, 682, 928, 941
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 3 cut(s) 149, 484, 736
DpnI GATC 4 cut(s) 67, 272, 641, 652
DpnII GATC 4 cut(s) 65, 270, 639, 650
DraIII CACNNNGTG 1 cut(s) 452
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
EaeI YGGCCR 3 cut(s) 72, 188, 1116
EagI CGGCCG 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 117, 477, 885
EarI CTCTTC 3 cut(s) 117, 477, 885
EciI GGCGGA 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 72
Eco130I CCWWGG 4 cut(s) 373, 514, 589, 910
Eco147I AGGCCT 2 cut(s) 734, 848
Eco24I GRGCYC 1 cut(s) 162
Eco52I CGGCCG 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 4 cut(s) 373, 514, 589, 910
EcoT22I ATGCAT 1 cut(s) 929
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 4 cut(s) 373, 514, 589, 910
FaeI CATG 6 cut(s) 53, 65, 593, 685, 931, 944
FatI CATG 6 cut(s) 49, 61, 589, 681, 927, 940
FauI CCCGC 1 cut(s) 130
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 4 cut(s) 81, 333, 444, 1116
FokI GGATG 4 cut(s) 572, 756, 821, 1144
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 81, 333, 444, 1116
GlaI GCGC 1 cut(s) 817
GluI GCNGC 4 cut(s) 81, 333, 444, 1116
GsuI CTGGAG 3 cut(s) 176, 357, 1106
HaeIII GGCC 6 cut(s) 74, 190, 598, 734, 848, 1118
HapII CCGG 3 cut(s) 219, 260, 311
HhaI GCGC 1 cut(s) 818
Hin1II CATG 6 cut(s) 53, 65, 593, 685, 931, 944
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HincII GTYRAC 1 cut(s) 999
HindII GTYRAC 1 cut(s) 999
HinfI GANTC 4 cut(s) 339, 806, 1088, 1098
HpaII CCGG 3 cut(s) 219, 260, 311
HphI GGTGA 2 cut(s) 56, 587
Hpy166II GTNNAC 4 cut(s) 47, 146, 999, 1127
Hpy188I TCNGA 6 cut(s) 133, 326, 409, 487, 844, 853
Hpy188III TCNNGA 6 cut(s) 219, 311, 500, 603, 773, 1161
Hpy8I GTNNAC 4 cut(s) 47, 146, 999, 1127
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 22, 566, 588
HpyCH4III ACNGT 3 cut(s) 39, 394, 619
HpyCH4V TGCA 5 cut(s) 107, 458, 494, 927, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 476, 740, 824, 1045
HpyF3I CTNAG 3 cut(s) 149, 484, 736
Hsp92II CATG 6 cut(s) 53, 65, 593, 685, 931, 944
HspAI GCGC 1 cut(s) 816
Kpn2I TCCGGA 2 cut(s) 218, 310
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 4 cut(s) 65, 270, 639, 650
LguI GCTCTTC 2 cut(s) 477, 885
LmnI GCTCC 3 cut(s) 157, 924, 1004
Lsp1109I GCAGC 2 cut(s) 67, 319
LweI GCATC 2 cut(s) 766, 778
MaeIII GTNAC 3 cut(s) 748, 865, 1072
MalI GATC 4 cut(s) 67, 272, 641, 652
MbiI CCGCTC 1 cut(s) 125
MboI GATC 4 cut(s) 65, 270, 639, 650
MboII GAAGA 5 cut(s) 104, 308, 464, 902, 953
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 3 cut(s) 22, 162, 472
MlsI TGGCCA 1 cut(s) 190
MluCI AATT 4 cut(s) 327, 606, 821, 948
MluNI TGGCCA 1 cut(s) 190
MlyI GAGTC 2 cut(s) 348, 1097
MmeI TCCRAC 1 cut(s) 504
Mox20I TGGCCA 1 cut(s) 190
Mph1103I ATGCAT 1 cut(s) 929
MroI TCCGGA 2 cut(s) 218, 310
MroXI GAANNNNTTC 1 cut(s) 957
MscI TGGCCA 1 cut(s) 190
MseI TTAA 5 cut(s) 204, 381, 764, 795, 1109
MslI CAYNNNNRTG 1 cut(s) 774
Msp20I TGGCCA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 3 cut(s) 219, 260, 311
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 5 cut(s) 80, 476, 740, 824, 1045
NcoI CCATGG 1 cut(s) 589
NdeI CATATG 1 cut(s) 628
NdeII GATC 4 cut(s) 65, 270, 639, 650
NlaIII CATG 6 cut(s) 53, 65, 593, 685, 931, 944
NsiI ATGCAT 1 cut(s) 929
NspI RCATGY 2 cut(s) 53, 685
NspV TTCGAA 1 cut(s) 964
PceI AGGCCT 2 cut(s) 734, 848
PciSI GCTCTTC 2 cut(s) 477, 885
PctI GAATGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 2 cut(s) 806, 1098
PflMI CCANNNNNTGG 1 cut(s) 928
PkrI GCNGC 4 cut(s) 82, 334, 445, 1117
PleI GAGTC 2 cut(s) 347, 1096
PpsI GAGTC 2 cut(s) 347, 1096
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PsrI GAACNNNNNNTAC 2 cut(s) 534, 566
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 1007
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 774
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 2 cut(s) 477, 885
SaqAI TTAA 5 cut(s) 204, 381, 764, 795, 1109
SatI GCNGC 4 cut(s) 81, 333, 444, 1116
Sau3AI GATC 4 cut(s) 65, 270, 639, 650
SchI GAGTC 2 cut(s) 348, 1097
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 3 cut(s) 22, 162, 472
SfaNI GCATC 2 cut(s) 766, 778
SfcI CTRYAG 1 cut(s) 1077
SfuI TTCGAA 1 cut(s) 964
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 4 cut(s) 327, 606, 821, 948
SseBI AGGCCT 2 cut(s) 734, 848
SsiI CCGC 5 cut(s) 123, 263, 444, 818, 1115
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 2 cut(s) 734, 848
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 4 cut(s) 373, 514, 589, 910
TaaI ACNGT 3 cut(s) 39, 394, 619
TaqI TCGA 1 cut(s) 964
TasI AATT 4 cut(s) 327, 606, 821, 948
TauI GCSGC 2 cut(s) 446, 1118
TfiI GAWTC 2 cut(s) 806, 1098
Tru1I TTAA 5 cut(s) 204, 381, 764, 795, 1109
Tru9I TTAA 5 cut(s) 204, 381, 764, 795, 1109
TseI GCWGC 2 cut(s) 80, 332
TspDTI ATGAA 6 cut(s) 50, 354, 426, 870, 920, 1146
Van91I CCANNNNNTGG 1 cut(s) 928
XceI RCATGY 2 cut(s) 53, 685
XmnI GAANNNNTTC 1 cut(s) 957
Zsp2I ATGCAT 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.