FvH4_6g11000
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013953
Physical Location & Seq
Forward (+)
6595414 .. 6597737
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11000.t1

Sequence Viewer

Length: 1059 bp
ATGGATGGGATGAGCGGCGAGTCTGAGTGCTCGAAGACAAGTCCCTCTGATGATCGAAATGAGGAAGGAAGTAGTGAGAGTGGAGAGAACTACGATGGTGAAATCAATAAGCCCAAAAACAATGGAGGAAGCTCAAGCAACAGCACGGTGGAAGAAAGTGGTGATCAGAAAAAGGGATCGGTGCGACCCTATGTTAGATCCAAGATGCCAAGGCTTAGATGGACACCGGATCTCCATCTTCGCTTTGTTCATGCCGTGGAGAGGCTCGGAGGACAAGATAGAGCTACACCAAAGATGGTTCTTCAGCTGATGAACATCAAGGGGCTAAGTATTGCGCATGTCAAGAGTCATTTACAGATGTATAGAAGCAAGAAGATCGACGACGCAGGCCAAGTGATAGGAGATCAAGGCCATCATCTTGTTGAATGTGGAGATAAAAATATATACAACCTCAGCCAACTTCCTATGCTTCAAGGATACAACCGAAGCCACATGAGTACCAGCTTCAGATATGGATACGGTGATTCCAATTCTTGGAGTACTAGTGCTTATGAAAACTTGAGGCATCCAAGAAGTACTAGTGGAATATTTCAAGGGACAATAGCTGAGAAGCTCTTTGGTAGCAGTACTAGCAACTGGAATAGTACTGCTTACAGCAATTTCCGGACAAGCTCCGAGCAAGGACCGTCTTGGATTACTCATACACTCAAAGACGAATGCAGCCAATTGTATAACATTCGCCGACAGTCCTTGCAAGCACATCAAGCTAGGTTGAGTATCATTGATCATCTTAATCCCACGATGCATGTTCAACCCAAAGCAAAGGATCACTTCACAAGTTTAAGCAGCACAGCAACCAATCTACAGGATTTGAAGACGTTGAAAAGGAAGGCTTCGGATTGCGATCTTGATTTAGATCTGTCTCTCAGGCTAACAACGAAGAATAATGACGAGAGCCCAAGAAGTACTACTCTGAAGGACAATGAAGTTGATTGCACTAGCCTTTCTCTGTCATTGTACTCACCGGCATCGGCAAAACTCAGCAGGGTGAAGGAGTAA

Protein Analysis

353

Amino Acids

39.27

Weight (kDa)

8.46

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 71 - 122 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38300
fragaria_vesca FvH4_6g11000
malus_domestica MD04G1162600.v1.1 MD12G1174900.v1.1
prunus_persica Prupe.6G282300_v2.0.a1 Prupe.6G282300_v2.0.a1
pyrus_communis pycom04g14550
rosa_chinensis RchiOBHm_Chr3g0462311
rosa_laevigata RLG00000024868
rosa_multiflora Rmu_sc0009800.1_g000002
rosa_roxburghii Rroxscaffold_6G00417600
rosa_rugosa Rorug03G0055700
rosa_samantha Rh3AG114400 Rh3BG117500 Rh3CG120300 Rh3DG119300
rosa_wichuraiana Rw3G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AccB7I CCANNNNNTGG 1 cut(s) 534
AccBSI CCGCTC 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 663
AciI CCGC 1 cut(s) 15
AclWI GGATC 4 cut(s) 184, 192, 237, 834
AcuI CTGAAG 3 cut(s) 287, 490, 995
AfaI GTAC 7 cut(s) 499, 541, 577, 628, 646, 967, 1019
AfiI CCNNNNNNNGG 2 cut(s) 261, 534
AgsI TTSAA 6 cut(s) 425, 473, 593, 812, 874, 883
AhlI ACTAGT 2 cut(s) 542, 578
AluBI AGCT 8 cut(s) 132, 284, 307, 504, 605, 613, 672, 767
AluI AGCT 8 cut(s) 132, 284, 307, 504, 605, 613, 672, 767
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 927
AlwI GGATC 4 cut(s) 184, 192, 237, 834
Aor13HI TCCGGA 1 cut(s) 663
AoxI GGCC 2 cut(s) 388, 409
ApeKI GCWGC 2 cut(s) 720, 846
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 4 cut(s) 110, 173, 533, 1014
AvaII GGWCC 1 cut(s) 683
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 2 cut(s) 41, 881
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 732, 858
BccI CCATC 5 cut(s) 89, 213, 243, 289, 420
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciVI GTATCC 2 cut(s) 470, 509
BclI TGATCA 2 cut(s) 163, 784
BcoDI GTCTC 1 cut(s) 927
BcuI ACTAGT 2 cut(s) 542, 578
BfaI CTAG 5 cut(s) 543, 579, 630, 768, 999
BfmI CTRYAG 1 cut(s) 863
BfuI GTATCC 2 cut(s) 470, 509
BglII AGATCT 1 cut(s) 916
BisI GCNGC 3 cut(s) 16, 721, 847
BlsI GCNGC 3 cut(s) 17, 722, 848
BmcAI AGTACT 5 cut(s) 541, 577, 628, 646, 967
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 683
BmsI GCATC 4 cut(s) 195, 574, 792, 1037
BpiI GAAGAC 2 cut(s) 41, 881
Bpu10I CCTNAGC 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 118, 580
BsaBI GATNNNNATC 4 cut(s) 234, 314, 903, 915
BsaJI CCNNGG 2 cut(s) 209, 255
BsaWI WCCGGW 2 cut(s) 226, 663
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 529, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 534
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 1 cut(s) 641
Bse8I GATNNNNATC 4 cut(s) 234, 314, 903, 915
BseAI TCCGGA 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 209, 255
BseGI GGATG 3 cut(s) 10, 15, 565
BseJI GATNNNNATC 4 cut(s) 234, 314, 903, 915
BseLI CCNNNNNNNGG 2 cut(s) 261, 534
BseMII CTCAG 5 cut(s) 15, 466, 597, 940, 1054
BseNI ACTGG 1 cut(s) 641
BseXI GCAGC 2 cut(s) 732, 858
BshFI GGCC 2 cut(s) 390, 411
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 227, 664, 1025
BslFI GGGAC 2 cut(s) 27, 610
BslI CCNNNNNNNGG 2 cut(s) 261, 534
BsmAI GTCTC 1 cut(s) 927
BsmFI GGGAC 2 cut(s) 27, 610
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 390, 411
Bsp1286I GDGCHC 2 cut(s) 32, 959
Bsp13I TCCGGA 1 cut(s) 663
BspACI CCGC 1 cut(s) 15
BspANI GGCC 2 cut(s) 390, 411
BspCNI CTCAG 5 cut(s) 16, 465, 598, 939, 1053
BspEI TCCGGA 1 cut(s) 663
BspPI GGATC 4 cut(s) 184, 192, 237, 834
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 2 cut(s) 209, 255
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 148, 521, 687, 747
BstC8I GCNNGC 2 cut(s) 388, 756
BstDEI CTNAG 7 cut(s) 24, 215, 326, 452, 606, 926, 1040
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 10, 15, 565
BstHHI GCGC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 927
BstMWI GCNNNNNNNGC 2 cut(s) 630, 764
BstNSI RCATGY 2 cut(s) 341, 809
BstSFI CTRYAG 1 cut(s) 863
BstV1I GCAGC 2 cut(s) 732, 858
BstV2I GAAGAC 2 cut(s) 41, 881
BstX2I RGATCY 3 cut(s) 197, 229, 916
BstYI RGATCY 3 cut(s) 197, 229, 916
BsuI GTATCC 2 cut(s) 470, 509
BsuRI GGCC 2 cut(s) 390, 411
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 3 cut(s) 10, 15, 565
Cac8I GCNNGC 2 cut(s) 388, 756
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 1 cut(s) 683
CseI GACGC 1 cut(s) 392
Csp6I GTAC 7 cut(s) 498, 540, 576, 627, 645, 966, 1018
CviAII CATG 4 cut(s) 251, 338, 493, 806
CviQI GTAC 7 cut(s) 498, 540, 576, 627, 645, 966, 1018
DdeI CTNAG 7 cut(s) 24, 215, 326, 452, 606, 926, 1040
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 959
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 3 cut(s) 287, 490, 995
EcoT14I CCWWGG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 959
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 4 cut(s) 254, 341, 496, 809
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 877, 909
FaqI GGGAC 2 cut(s) 27, 610
FatI CATG 4 cut(s) 250, 337, 492, 805
FbaI TGATCA 2 cut(s) 163, 784
Fnu4HI GCNGC 3 cut(s) 16, 721, 847
FokI GGATG 3 cut(s) 17, 22, 552
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 3 cut(s) 16, 721, 847
FspBI CTAG 5 cut(s) 543, 579, 630, 768, 999
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 1 cut(s) 336
GluI GCNGC 3 cut(s) 16, 721, 847
HaeIII GGCC 2 cut(s) 390, 411
HapII CCGG 3 cut(s) 227, 664, 1025
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 337
Hin1II CATG 4 cut(s) 254, 341, 496, 809
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HinfI GANTC 3 cut(s) 20, 346, 524
HpaII CCGG 3 cut(s) 227, 664, 1025
HphI GGTGA 4 cut(s) 110, 173, 533, 1014
Hpy188I TCNGA 8 cut(s) 25, 49, 168, 269, 509, 676, 898, 975
Hpy188III TCNNGA 3 cut(s) 343, 664, 908
Hpy99I CGWCG 2 cut(s) 383, 386
HpyAV CCTTC 4 cut(s) 59, 883, 970, 1045
HpyCH4III ACNGT 4 cut(s) 148, 521, 687, 747
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 4 cut(s) 720, 754, 805, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 630, 764
HpyF3I CTNAG 7 cut(s) 24, 215, 326, 452, 606, 926, 1040
HpySE526I ACGT 1 cut(s) 878
Hsp92II CATG 4 cut(s) 254, 341, 496, 809
HspAI GCGC 1 cut(s) 335
Kpn2I TCCGGA 1 cut(s) 663
Ksp22I TGATCA 2 cut(s) 163, 784
LmnI GCTCC 1 cut(s) 677
LpnPI CCDG 9 cut(s) 240, 372, 514, 622, 677, 851, 913, 1030, 1038
Lsp1109I GCAGC 2 cut(s) 732, 858
LweI GCATC 4 cut(s) 195, 574, 792, 1037
MaeI CTAG 5 cut(s) 543, 579, 630, 768, 999
MaeII ACGT 1 cut(s) 878
MbiI CCGCTC 1 cut(s) 15
MboII GAAGA 7 cut(s) 46, 164, 230, 293, 385, 886, 952
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 3 cut(s) 197, 229, 916
MhlI GDGCHC 2 cut(s) 32, 959
MluCI AATT 3 cut(s) 529, 658, 725
MlyI GAGTC 2 cut(s) 29, 355
MnlI CCTC 7 cut(s) 55, 55, 119, 255, 263, 461, 555
Mph1103I ATGCAT 1 cut(s) 807
MroI TCCGGA 1 cut(s) 663
MseI TTAA 2 cut(s) 792, 842
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 227, 664, 1025
MunI CAATTG 1 cut(s) 725
Mva1269I GAATGC 1 cut(s) 722
MwoI GCNNNNNNNGC 2 cut(s) 630, 764
NlaIII CATG 4 cut(s) 254, 341, 496, 809
NsbI TGCGCA 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 2 cut(s) 341, 809
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 3 cut(s) 17, 722, 848
PleI GAGTC 2 cut(s) 28, 354
PpsI GAGTC 2 cut(s) 28, 354
PspPI GGNCC 1 cut(s) 683
PsuI RGATCY 3 cut(s) 197, 229, 916
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 7 cut(s) 499, 541, 577, 628, 646, 967, 1019
RsaNI GTAC 7 cut(s) 498, 540, 576, 627, 645, 966, 1018
SaqAI TTAA 2 cut(s) 792, 842
SatI GCNGC 3 cut(s) 16, 721, 847
Sau96I GGNCC 1 cut(s) 683
ScaI AGTACT 5 cut(s) 541, 577, 628, 646, 967
SchI GAGTC 2 cut(s) 29, 355
SduI GDGCHC 2 cut(s) 32, 959
SfaNI GCATC 4 cut(s) 195, 574, 792, 1037
SfcI CTRYAG 1 cut(s) 863
SinI GGWCC 1 cut(s) 683
SmlI CTYRAG 2 cut(s) 133, 559
SmoI CTYRAG 2 cut(s) 133, 559
SpeI ACTAGT 2 cut(s) 542, 578
Sse9I AATT 3 cut(s) 529, 658, 725
SsiI CCGC 1 cut(s) 15
SspI AATATT 1 cut(s) 588
SspMI CTAG 5 cut(s) 543, 579, 630, 768, 999
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 4 cut(s) 148, 521, 687, 747
TaiI ACGT 1 cut(s) 881
TaqI TCGA 3 cut(s) 32, 55, 378
TasI AATT 3 cut(s) 529, 658, 725
TatI WGTACW 6 cut(s) 539, 575, 626, 644, 965, 1017
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 2 cut(s) 792, 842
Tru9I TTAA 2 cut(s) 792, 842
TseI GCWGC 2 cut(s) 720, 846
TspDTI ATGAA 4 cut(s) 239, 326, 567, 999
Van91I CCANNNNNTGG 1 cut(s) 534
VpaK11BI GGWCC 1 cut(s) 683
XceI RCATGY 2 cut(s) 341, 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XspI CTAG 5 cut(s) 543, 579, 630, 768, 999
ZrmI AGTACT 5 cut(s) 541, 577, 628, 646, 967
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.