AT2G38640

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013414
Physical Location & Seq
Reverse (-)
16157521 .. 16158660
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38640.1

Sequence Viewer

Length: 591 bp
ATGACAAAAGTTCACCCAAAATTCCCAAGCACATGCGAAGAGAGCTTGTGTGATAGCAAAGCAGCAGTTGTTTTAACGGTGTGGAAGAAGTCCCTTCTCTTCAACTGCGACGGATTCACGGTTTACAACGCCAATGGAGAGCTTGTCTTTAGAGTTGACAACTACATGAATTGTCCTAGAGACAACATCGTCCTTATGGATGCTTCCGGCTTTCCCCTCCTCTCCATTCGCCGCAAGAAGTTGAGTCTTGGAGATTGCTGGATGGTATACGATGGAGAAACAGAGAGAGATCCAATATTCACGGCGAGAAAGAACGTTAGCATAATATCTAACCGGAAAAGCTTGGCGTGGGTTAGCGCAAAGAAGACGGTGTTGTACGAGATAGAAGGATCTTACGGTCAAAGAAGCTGCAAAATATTGGATGAGAGGAGGAACAAGAAGAAAACGGCGGAGATCAAGAGGAAAGAAACGGTGATCGGAGGAGTTGCCTTTGGCAAAGATGTCTATAAGCTTATCGTTGAATCGGAGATGGAACCTCGTGTGGCCATGGCACTTACCATCATCCTCGACCAAATGTTTCGATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

196

Amino Acids

22.29

Weight (kDa)

9.19

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 23 - 190 1.2e-37 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 267
AciI CCGC 2 cut(s) 232, 449
AclI AACGTT 1 cut(s) 315
AclWI GGATC 2 cut(s) 284, 397
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 1 cut(s) 377
AgsI TTSAA 2 cut(s) 103, 521
AluBI AGCT 5 cut(s) 45, 142, 342, 408, 511
AluI AGCT 5 cut(s) 45, 142, 342, 408, 511
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 284, 397
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 62, 408
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 5, 484
BalI TGGCCA 1 cut(s) 545
BauI CACGAG 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 74, 395
BccI CCATC 4 cut(s) 256, 266, 523, 566
BceAI ACGGC 2 cut(s) 318, 462
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 177
BisI GCNGC 3 cut(s) 63, 232, 409
BlsI GCNGC 3 cut(s) 64, 233, 410
BmiI GGNNCC 1 cut(s) 534
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 4 cut(s) 205, 267, 427, 561
BseRI GAGGAG 3 cut(s) 209, 442, 495
BseXI GCAGC 2 cut(s) 74, 395
BshFI GGCC 1 cut(s) 545
BsiSI CCGG 2 cut(s) 207, 334
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 545
Bsp143I GATC 5 cut(s) 289, 389, 453, 474, 581
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 2 cut(s) 232, 449
BspANI GGCC 1 cut(s) 545
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 2 cut(s) 284, 397
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 5 cut(s) 289, 389, 453, 474, 581
BssNAI GTATAC 1 cut(s) 268
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 537
Bst4CI ACNGT 5 cut(s) 79, 121, 370, 398, 472
Bst6I CTCTTC 2 cut(s) 33, 104
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 4 cut(s) 205, 267, 427, 561
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 5 cut(s) 292, 392, 456, 477, 584
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 5 cut(s) 289, 389, 453, 474, 581
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 74, 395
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 2 cut(s) 289, 389
BstYI RGATCY 2 cut(s) 289, 389
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 4 cut(s) 205, 267, 427, 561
CfoI GCGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 376
CviAII CATG 3 cut(s) 33, 166, 547
CviJI RGCY 7 cut(s) 45, 142, 210, 342, 408, 511, 545
CviKI_1 RGCY 7 cut(s) 45, 142, 210, 342, 408, 511, 545
CviQI GTAC 1 cut(s) 376
DpnI GATC 5 cut(s) 291, 391, 455, 476, 583
DpnII GATC 5 cut(s) 289, 389, 453, 474, 581
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 33, 104
EarI CTCTTC 2 cut(s) 33, 104
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 36, 169, 550
FaiI YATR 7 cut(s) 34, 167, 197, 268, 323, 507, 548
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 32, 165, 546
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 63, 232, 409
FokI GGATG 4 cut(s) 212, 274, 434, 548
Fsp4HI GCNGC 3 cut(s) 63, 232, 409
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 63, 232, 409
HaeIII GGCC 1 cut(s) 545
HapII CCGG 2 cut(s) 207, 334
HhaI GCGC 1 cut(s) 359
Hin1II CATG 3 cut(s) 36, 169, 550
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 2 cut(s) 340, 509
HinfI GANTC 3 cut(s) 114, 244, 521
HpaII CCGG 2 cut(s) 207, 334
HphI GGTGA 2 cut(s) 5, 484
Hpy166II GTNNAC 4 cut(s) 13, 124, 157, 268
Hpy188I TCNGA 2 cut(s) 479, 526
Hpy188III TCNNGA 2 cut(s) 457, 588
Hpy8I GTNNAC 4 cut(s) 13, 124, 157, 268
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 104, 380
HpyCH4III ACNGT 5 cut(s) 79, 121, 370, 398, 472
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 3 cut(s) 36, 169, 550
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 5 cut(s) 289, 389, 453, 474, 581
LpnPI CCDG 3 cut(s) 220, 244, 347
Lsp1109I GCAGC 2 cut(s) 74, 395
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 315
MalI GATC 5 cut(s) 291, 391, 455, 476, 583
MboI GATC 5 cut(s) 289, 389, 453, 474, 581
MboII GAAGA 6 cut(s) 50, 91, 97, 376, 451, 576
MflI RGATCY 2 cut(s) 289, 389
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 2 cut(s) 20, 169
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 253
MnlI CCTC 8 cut(s) 227, 230, 420, 423, 453, 473, 546, 575
Mox20I TGGCCA 1 cut(s) 545
MscI TGGCCA 1 cut(s) 545
MseI TTAA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 2 cut(s) 207, 334
MwoI GCNNNNNNNGC 1 cut(s) 42
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 289, 389, 453, 474, 581
NlaIII CATG 3 cut(s) 36, 169, 550
NlaIV GGNNCC 1 cut(s) 534
NspI RCATGY 1 cut(s) 36
PfeI GAWTC 2 cut(s) 114, 521
PkrI GCNGC 3 cut(s) 64, 233, 410
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 534
PsuI RGATCY 2 cut(s) 289, 389
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 3 cut(s) 63, 232, 409
Sau3AI GATC 5 cut(s) 289, 389, 453, 474, 581
SchI GAGTC 1 cut(s) 253
SetI ASST 7 cut(s) 47, 144, 318, 344, 410, 513, 538
SfaNI GCATC 1 cut(s) 190
Sse9I AATT 2 cut(s) 20, 169
SsiI CCGC 2 cut(s) 232, 449
SspI AATATT 2 cut(s) 297, 417
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 5 cut(s) 79, 121, 370, 398, 472
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 567, 580
TasI AATT 2 cut(s) 20, 169
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 114, 521
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseI GCWGC 2 cut(s) 62, 408
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 126
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.