Rh3AG093900

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013414
Physical Location & Seq
Forward (+)
7673259 .. 7674457
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG093900.1

Sequence Viewer

Length: 630 bp
ATGACAAAAGTATACCCAAATGGTGCTGCAGCAGCCACGGCCAATGTCGCCGCCTACGAGGCTGAGCAGAAGCTGAGGGTTTCAGGATCCGAAGAGGCCACAGTGCTGACGGTGTGGAAGAAGTCGTTGCTGTTGAATTGCAACGGGTTTACGGTGTTTGACACCAAGGGAAATCTCGTCTTTAGGGTCGACAACTACTTGTCCGGCCGTAAAGGCGAGATCGTCCTCATGGACGCCTACGGCAAGCCTCTCCTCACCATCCGCCGCAAGAGGCTGAGCTTTGGGGATAACTGGATGGTTTACGACGGAGAGACGGAGGAGAATCCGCGGTTCTGCGTGAGGAAGAACGTGAACATGCTAAACAACAAGTACTTGGCGCAAGTGAACAACAAGAAGTCGGTGCTGTACCAGGTAGAAGGGTCGTACGCGCAGAGGTGCTGCGCCGTGTACGACGGAAAGAGGAGGAAGGTGGCGGAGATCAAGAGGAAGGAGGCGGCGGTGGGCGGAGTGGCGTTGGGAGTCGACGTCTTCCGCCTCGTCGTACAGCCCGATCTCGACACGTCGGTGGCCATGGCGTTTGTCATCCTCCTTGACCAGATGTACAGCTCGTCGTCGTCTTCTAGACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

209

Amino Acids

23.33

Weight (kDa)

9.47

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 34 - 198 6.8e-39 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
AccI GTMKAC 3 cut(s) 12, 189, 522
AccII CGCG 2 cut(s) 328, 428
AclWI GGATC 2 cut(s) 81, 94
AcoI YGGCCR 3 cut(s) 39, 205, 567
AcyI GRCGYC 2 cut(s) 234, 525
AfaI GTAC 6 cut(s) 371, 407, 425, 449, 543, 602
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 561
AjnI CCWGG 1 cut(s) 408
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 3 cut(s) 73, 279, 606
AluI AGCT 3 cut(s) 73, 279, 606
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 2 cut(s) 81, 94
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 4 cut(s) 39, 96, 205, 567
ApeKI GCWGC 4 cut(s) 26, 29, 32, 438
AspLEI GCGC 3 cut(s) 379, 430, 443
AsuHPI GGTGA 1 cut(s) 247
BalI TGGCCA 1 cut(s) 569
BamHI GGATCC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 520, 609
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 13, 41, 44, 425
BccI CCATC 2 cut(s) 266, 289
BceAI ACGGC 4 cut(s) 54, 192, 256, 428
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 27
BglI GCCNNNNNGGC 2 cut(s) 59, 213
BisI GCNGC 7 cut(s) 27, 30, 33, 51, 265, 439, 495
BlpI GCTNAGC 2 cut(s) 63, 275
BlsI GCNGC 7 cut(s) 28, 31, 34, 52, 266, 440, 496
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 561
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 410
BpiI GAAGAC 2 cut(s) 520, 609
Bpu10I CCTNAGC 1 cut(s) 74
Bpu1102I GCTNAGC 2 cut(s) 63, 275
BsaHI GRCGYC 2 cut(s) 234, 525
BsaJI CCNNGG 4 cut(s) 36, 165, 326, 570
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 4 cut(s) 36, 165, 326, 570
BseGI GGATG 3 cut(s) 258, 300, 582
BseMII CTCAG 3 cut(s) 54, 65, 266
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 242, 332, 475
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 4 cut(s) 13, 41, 44, 425
Bsh1236I CGCG 2 cut(s) 328, 428
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 4 cut(s) 41, 98, 207, 569
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 204
BsiWI CGTACG 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 305
BsmBI CGTCTC 1 cut(s) 305
BsnI GGCC 4 cut(s) 41, 98, 207, 569
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 4 cut(s) 86, 219, 477, 550
Bsp1720I GCTNAGC 2 cut(s) 63, 275
Bsp19I CCATGG 1 cut(s) 570
BspANI GGCC 4 cut(s) 41, 98, 207, 569
BspCNI CTCAG 3 cut(s) 55, 66, 267
BspFNI CGCG 2 cut(s) 328, 428
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 2 cut(s) 81, 94
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 36, 165, 326, 570
BssMI GATC 4 cut(s) 86, 219, 477, 550
BssNAI GTATAC 1 cut(s) 13
BssNI GRCGYC 2 cut(s) 234, 525
BssT1I CCWWGG 2 cut(s) 165, 570
Bst1107I GTATAC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 3 cut(s) 103, 112, 154
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 2 cut(s) 234, 525
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 63, 74, 275
BstDSI CCRYGG 3 cut(s) 36, 326, 570
BstF5I GGATG 3 cut(s) 258, 300, 582
BstFNI CGCG 2 cut(s) 328, 428
BstHHI GCGC 3 cut(s) 379, 430, 443
BstKTI GATC 4 cut(s) 89, 222, 480, 553
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 4 cut(s) 86, 219, 477, 550
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 5 cut(s) 32, 38, 47, 59, 213
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 2 cut(s) 328, 428
BstV1I GCAGC 4 cut(s) 13, 41, 44, 425
BstV2I GAAGAC 2 cut(s) 520, 609
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BstZ17I GTATAC 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 4 cut(s) 41, 98, 207, 569
BtgI CCRYGG 3 cut(s) 36, 326, 570
BtrI CACGTC 1 cut(s) 561
BtsCI GGATG 3 cut(s) 258, 300, 582
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 73
CfoI GCGC 3 cut(s) 379, 430, 443
Cfr42I CCGCGG 1 cut(s) 329
CseI GACGC 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 408
Csp6I GTAC 6 cut(s) 370, 406, 424, 448, 542, 601
CviAII CATG 3 cut(s) 229, 355, 571
CviQI GTAC 6 cut(s) 370, 406, 424, 448, 542, 601
DdeI CTNAG 3 cut(s) 63, 74, 275
DpnI GATC 4 cut(s) 88, 221, 479, 552
DpnII GATC 4 cut(s) 86, 219, 477, 550
EaeI YGGCCR 3 cut(s) 39, 205, 567
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 4 cut(s) 251, 488, 519, 521
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 165, 570
Eco52I CGGCCG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 2 cut(s) 165, 570
ErhI CCWWGG 2 cut(s) 165, 570
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 3 cut(s) 232, 358, 574
FaiI YATR 4 cut(s) 13, 230, 356, 572
FatI CATG 3 cut(s) 228, 354, 570
FblI GTMKAC 3 cut(s) 12, 189, 522
Fnu4HI GCNGC 7 cut(s) 27, 30, 33, 51, 265, 439, 495
FokI GGATG 3 cut(s) 245, 307, 569
Fsp4HI GCNGC 7 cut(s) 27, 30, 33, 51, 265, 439, 495
FspBI CTAG 1 cut(s) 621
GlaI GCGC 3 cut(s) 378, 429, 442
GluI GCNGC 7 cut(s) 27, 30, 33, 51, 265, 439, 495
HaeIII GGCC 4 cut(s) 41, 98, 207, 569
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 242
HhaI GCGC 3 cut(s) 379, 430, 443
Hin1I GRCGYC 2 cut(s) 234, 525
Hin1II CATG 3 cut(s) 232, 358, 574
Hin6I GCGC 3 cut(s) 377, 428, 441
HinP1I GCGC 3 cut(s) 377, 428, 441
HincII GTYRAC 2 cut(s) 190, 523
HindII GTYRAC 2 cut(s) 190, 523
HinfI GANTC 2 cut(s) 322, 519
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 8 cut(s) 13, 150, 190, 301, 352, 385, 448, 523
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 4 cut(s) 84, 481, 554, 621
Hpy8I GTNNAC 8 cut(s) 13, 150, 190, 301, 352, 385, 448, 523
Hpy99I CGWCG 7 cut(s) 308, 455, 527, 542, 565, 613, 616
HpyAV CCTTC 3 cut(s) 410, 460, 481
HpyCH4III ACNGT 3 cut(s) 103, 112, 154
HpyCH4IV ACGT 4 cut(s) 348, 525, 560, 625
HpyCH4V TGCA 2 cut(s) 29, 141
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 38, 47, 59, 213
HpyF3I CTNAG 3 cut(s) 63, 74, 275
HpySE526I ACGT 4 cut(s) 348, 525, 560, 625
Hsp92I GRCGYC 2 cut(s) 234, 525
Hsp92II CATG 3 cut(s) 232, 358, 574
HspAI GCGC 3 cut(s) 377, 428, 441
KspI CCGCGG 1 cut(s) 329
Kzo9I GATC 4 cut(s) 86, 219, 477, 550
LpnPI CCDG 6 cut(s) 69, 217, 277, 395, 422, 608
Lsp1109I GCAGC 4 cut(s) 13, 41, 44, 425
MabI ACCWGGT 1 cut(s) 408
MaeI CTAG 1 cut(s) 621
MaeII ACGT 4 cut(s) 348, 525, 560, 625
MalI GATC 4 cut(s) 88, 221, 479, 552
MboI GATC 4 cut(s) 86, 219, 477, 550
MboII GAAGA 5 cut(s) 104, 130, 355, 520, 609
MflI RGATCY 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 1 cut(s) 528
Mox20I TGGCCA 1 cut(s) 569
MscI TGGCCA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 328, 428
MwoI GCNNNNNNNGC 5 cut(s) 32, 38, 47, 59, 213
NcoI CCATGG 1 cut(s) 570
NdeII GATC 4 cut(s) 86, 219, 477, 550
NlaIII CATG 3 cut(s) 232, 358, 574
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 1 cut(s) 358
OliI CACNNNNGTG 1 cut(s) 563
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 546
PfeI GAWTC 1 cut(s) 322
Pfl23II CGTACG 1 cut(s) 423
PkrI GCNGC 7 cut(s) 28, 31, 34, 52, 266, 440, 496
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 6 cut(s) 371, 407, 425, 449, 543, 602
RsaNI GTAC 6 cut(s) 370, 406, 424, 448, 542, 601
RseI CAYNNNNRTG 1 cut(s) 563
SacII CCGCGG 1 cut(s) 329
SalI GTCGAC 2 cut(s) 188, 521
SatI GCNGC 7 cut(s) 27, 30, 33, 51, 265, 439, 495
Sau3AI GATC 4 cut(s) 86, 219, 477, 550
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 1 cut(s) 410
SexAI ACCWGGT 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 27
Sfr303I CCGCGG 1 cut(s) 329
SgrBI CCGCGG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 563
Sse9I AATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 165, 570
TaaI ACNGT 3 cut(s) 103, 112, 154
TaiI ACGT 4 cut(s) 351, 528, 563, 628
TaqI TCGA 3 cut(s) 189, 522, 555
TasI AATT 1 cut(s) 136
TatI WGTACW 2 cut(s) 369, 600
TauI GCSGC 3 cut(s) 53, 267, 497
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 1 cut(s) 108
TseI GCWGC 4 cut(s) 26, 29, 32, 438
TspGWI ACGGA 3 cut(s) 321, 329, 468
TspRI CASTG 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 3 cut(s) 12, 189, 522
XspI CTAG 1 cut(s) 621
ZraI GACGTC 1 cut(s) 526
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.