FvH4_6g09160

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013414
Physical Location & Seq
Forward (+)
5448522 .. 5450092
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09160.t1

Sequence Viewer

Length: 624 bp
ATGACAAAGGTATACCCCAACGGCGCTGCTGCAGCGGCCACGGCCAATGTCGCCGCCTACGAGGCTGAGCAGAAGAGGAGGGTATCGGGGTCCGAAGAGGCCACGGTGCTGACGGTGTGGAAGAAGTCATTGCTGTTGAACTGCAACGGGTTTACGGTGTTTGACACCAAGGGAAACCTTGTCTTTAGGGTCGACAACTACTTGTCTGGCCGGAAAGGGGAGATCGTCCTCATGGACGCCCATGGCAAGTGCCTCCTCACCATCCGCCGCAAGAGACTGAGCTTGGGGGATAACTGGGTGGTATACGACGGAGAGACGGCGGAGAATCCGCGGTTCTGCGTGAGGAAGAACGTGAACATGCTAAACAACAAGTACTTGGCGCAAGTGAACAACAAGAACTCGGTGTTGTACCAGGTAGAAGGGTCGTACGCGCAGAGGTGCTGCGCCGTATACGACGGCAAGAGGAGGAAGGTGGCGGAGATCAAGAGGAAGGAGGCGGCCGTGGGCGGAGTGGCTATGGGAGTCGACGTCTTCCGACTAGTCGTACAGCCCGATCTTGACACGTCGGTGGCGATGGCGTTTGTCATCCTCCTTGACCAGATGTACGGCTCCTCTAAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

208

Amino Acids

22.99

Weight (kDa)

9.51

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 35 - 199 7.6e-38 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 531
AccI GTMKAC 5 cut(s) 12, 192, 303, 450, 525
AccII CGCG 2 cut(s) 331, 431
AcoI YGGCCR 4 cut(s) 36, 42, 208, 498
AcyI GRCGYC 2 cut(s) 237, 528
AfaI GTAC 5 cut(s) 374, 410, 428, 546, 605
AfiI CCNNNNNNNGG 1 cut(s) 217
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 538
AjiI CACGTC 1 cut(s) 564
AjnI CCWGG 1 cut(s) 411
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 268, 308
AoxI GGCC 5 cut(s) 36, 42, 99, 208, 498
ApeKI GCWGC 4 cut(s) 26, 29, 32, 441
AspLEI GCGC 4 cut(s) 26, 382, 433, 446
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 523
BbvI GCAGC 4 cut(s) 13, 16, 44, 428
BccI CCATC 2 cut(s) 269, 568
BceAI ACGGC 7 cut(s) 37, 57, 333, 431, 472, 485, 622
BciT130I CCWGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 268, 308
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 8 cut(s) 27, 30, 33, 36, 54, 268, 442, 498
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 8 cut(s) 28, 31, 34, 37, 55, 269, 443, 499
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 91, 610
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 66
BsaHI GRCGYC 2 cut(s) 237, 528
BsaJI CCNNGG 6 cut(s) 39, 102, 168, 241, 329, 501
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 6 cut(s) 39, 102, 168, 241, 329, 501
BseGI GGATG 2 cut(s) 261, 585
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 57, 269
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 4 cut(s) 91, 245, 478, 601
BseX3I CGGCCG 1 cut(s) 498
BseXI GCAGC 4 cut(s) 13, 16, 44, 428
Bsh1236I CGCG 2 cut(s) 331, 431
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 5 cut(s) 38, 44, 101, 210, 500
BsiEI CGRYCG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 211
BsiWI CGTACG 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 268, 308
BsmBI CGTCTC 1 cut(s) 308
BsnI GGCC 5 cut(s) 38, 44, 101, 210, 500
Bsp143I GATC 3 cut(s) 222, 480, 553
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 5 cut(s) 38, 44, 101, 210, 500
BspCNI CTCAG 2 cut(s) 58, 270
BspFNI CGCG 2 cut(s) 331, 431
BspLI GGNNCC 2 cut(s) 91, 610
BspMAI CTGCAG 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 6 cut(s) 39, 102, 168, 241, 329, 501
BssMI GATC 3 cut(s) 222, 480, 553
BssNAI GTATAC 3 cut(s) 13, 304, 451
BssNI GRCGYC 2 cut(s) 237, 528
BssT1I CCWWGG 2 cut(s) 168, 241
Bst1107I GTATAC 3 cut(s) 13, 304, 451
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 106, 115, 157
Bst6I CTCTTC 2 cut(s) 68, 90
BstACI GRCGYC 2 cut(s) 237, 528
BstDEI CTNAG 3 cut(s) 66, 278, 615
BstDSI CCRYGG 5 cut(s) 39, 102, 241, 329, 501
BstF5I GGATG 2 cut(s) 261, 585
BstFNI CGCG 2 cut(s) 331, 431
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 4 cut(s) 26, 382, 433, 446
BstKTI GATC 3 cut(s) 225, 483, 556
BstMAI GTCTC 2 cut(s) 268, 308
BstMBI GATC 3 cut(s) 222, 480, 553
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 5 cut(s) 32, 35, 41, 50, 62
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 2 cut(s) 331, 431
BstV1I GCAGC 4 cut(s) 13, 16, 44, 428
BstV2I GAAGAC 1 cut(s) 523
BstZ17I GTATAC 3 cut(s) 13, 304, 451
BstZI CGGCCG 1 cut(s) 498
BsuRI GGCC 5 cut(s) 38, 44, 101, 210, 500
BtgI CCRYGG 5 cut(s) 39, 102, 241, 329, 501
BtgZI GCGATG 1 cut(s) 587
BtrI CACGTC 1 cut(s) 564
BtsCI GGATG 2 cut(s) 261, 585
CfoI GCGC 4 cut(s) 26, 382, 433, 446
Cfr13I GGNCC 1 cut(s) 90
Cfr42I CCGCGG 1 cut(s) 332
CseI GACGC 1 cut(s) 245
CsiI ACCWGGT 1 cut(s) 411
Csp6I GTAC 5 cut(s) 373, 409, 427, 545, 604
CviAII CATG 3 cut(s) 232, 242, 358
CviQI GTAC 5 cut(s) 373, 409, 427, 545, 604
DdeI CTNAG 3 cut(s) 66, 278, 615
DpnI GATC 3 cut(s) 224, 482, 555
DpnII GATC 3 cut(s) 222, 480, 553
EaeI YGGCCR 4 cut(s) 36, 42, 208, 498
EagI CGGCCG 1 cut(s) 498
Eam1104I CTCTTC 2 cut(s) 68, 90
EarI CTCTTC 2 cut(s) 68, 90
EciI GGCGGA 4 cut(s) 254, 335, 491, 522
EclXI CGGCCG 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 168, 241
Eco47I GGWCC 1 cut(s) 90
Eco52I CGGCCG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 168, 241
ErhI CCWWGG 2 cut(s) 168, 241
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 3 cut(s) 235, 245, 361
FaiI YATR 7 cut(s) 13, 233, 243, 304, 359, 451, 518
FatI CATG 3 cut(s) 231, 241, 357
FblI GTMKAC 5 cut(s) 12, 192, 303, 450, 525
Fnu4HI GCNGC 8 cut(s) 27, 30, 33, 36, 54, 268, 442, 498
FokI GGATG 2 cut(s) 248, 572
Fsp4HI GCNGC 8 cut(s) 27, 30, 33, 36, 54, 268, 442, 498
FspBI CTAG 1 cut(s) 539
GlaI GCGC 4 cut(s) 25, 381, 432, 445
GluI GCNGC 8 cut(s) 27, 30, 33, 36, 54, 268, 442, 498
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 5 cut(s) 38, 44, 101, 210, 500
HapII CCGG 1 cut(s) 211
HgaI GACGC 1 cut(s) 245
HhaI GCGC 4 cut(s) 26, 382, 433, 446
Hin1I GRCGYC 2 cut(s) 237, 528
Hin1II CATG 3 cut(s) 235, 245, 361
Hin6I GCGC 4 cut(s) 24, 380, 431, 444
HinP1I GCGC 4 cut(s) 24, 380, 431, 444
HincII GTYRAC 2 cut(s) 193, 526
HindII GTYRAC 2 cut(s) 193, 526
HinfI GANTC 2 cut(s) 325, 522
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 8 cut(s) 13, 153, 193, 304, 355, 388, 451, 526
Hpy188I TCNGA 2 cut(s) 94, 536
Hpy188III TCNNGA 2 cut(s) 484, 557
Hpy8I GTNNAC 8 cut(s) 13, 153, 193, 304, 355, 388, 451, 526
Hpy99I CGWCG 4 cut(s) 311, 458, 530, 568
HpyAV CCTTC 3 cut(s) 413, 463, 484
HpyCH4III ACNGT 3 cut(s) 106, 115, 157
HpyCH4IV ACGT 3 cut(s) 351, 528, 563
HpyCH4V TGCA 2 cut(s) 32, 144
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 35, 41, 50, 62
HpyF3I CTNAG 3 cut(s) 66, 278, 615
HpySE526I ACGT 3 cut(s) 351, 528, 563
Hsp92I GRCGYC 2 cut(s) 237, 528
Hsp92II CATG 3 cut(s) 235, 245, 361
HspAI GCGC 4 cut(s) 24, 380, 431, 444
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 3 cut(s) 222, 480, 553
LmnI GCTCC 1 cut(s) 614
LpnPI CCDG 6 cut(s) 192, 224, 280, 398, 425, 611
Lsp1109I GCAGC 4 cut(s) 13, 16, 44, 428
MabI ACCWGGT 1 cut(s) 411
MaeI CTAG 1 cut(s) 539
MaeII ACGT 3 cut(s) 351, 528, 563
MalI GATC 3 cut(s) 224, 482, 555
MboI GATC 3 cut(s) 222, 480, 553
MboII GAAGA 5 cut(s) 85, 107, 133, 358, 523
MlyI GAGTC 1 cut(s) 531
MmeI TCCRAC 1 cut(s) 559
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 2 cut(s) 35, 331
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 2 cut(s) 331, 431
MwoI GCNNNNNNNGC 5 cut(s) 32, 35, 41, 50, 62
NcoI CCATGG 1 cut(s) 241
NdeII GATC 3 cut(s) 222, 480, 553
NlaIII CATG 3 cut(s) 235, 245, 361
NlaIV GGNNCC 2 cut(s) 91, 610
NspI RCATGY 1 cut(s) 361
OliI CACNNNNGTG 1 cut(s) 566
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 549, 569
PfeI GAWTC 1 cut(s) 325
Pfl23II CGTACG 1 cut(s) 426
PkrI GCNGC 8 cut(s) 28, 31, 34, 37, 55, 269, 443, 499
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspLI CGTACG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 91, 610
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 34
RsaI GTAC 5 cut(s) 374, 410, 428, 546, 605
RsaNI GTAC 5 cut(s) 373, 409, 427, 545, 604
RseI CAYNNNNRTG 1 cut(s) 566
SacII CCGCGG 1 cut(s) 332
SalI GTCGAC 2 cut(s) 191, 524
SatI GCNGC 8 cut(s) 27, 30, 33, 36, 54, 268, 442, 498
Sau3AI GATC 3 cut(s) 222, 480, 553
Sau96I GGNCC 1 cut(s) 90
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 1 cut(s) 413
SetI ASST 9 cut(s) 12, 180, 284, 354, 417, 440, 474, 531, 566
SexAI ACCWGGT 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 332
SgrBI CCGCGG 1 cut(s) 332
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 566
SpeI ACTAGT 1 cut(s) 538
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 2 cut(s) 168, 241
TaaI ACNGT 3 cut(s) 106, 115, 157
TaiI ACGT 3 cut(s) 354, 531, 566
TaqI TCGA 2 cut(s) 192, 525
TatI WGTACW 1 cut(s) 372
TauI GCSGC 4 cut(s) 38, 56, 270, 500
TfiI GAWTC 1 cut(s) 325
TseI GCWGC 4 cut(s) 26, 29, 32, 441
TspGWI ACGGA 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 90
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 5 cut(s) 12, 192, 303, 450, 525
XspI CTAG 1 cut(s) 539
ZraI GACGTC 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.