RchiOBHm_Chr3g0459371

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013414
Physical Location & Seq
Forward (+)
7829995 .. 7831387
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42596

Sequence Viewer

Length: 714 bp
ATGTGTGTAACTTATTCCATCAACACCTTCAAAAACTCATCACTAGATACCACTCTTAACATTTCCAAACTTTCAAGCTTTGTGATGACAAAAGTATACCCAAATGGTGCTGCAGCAGCCACGGCCAATGTCTCCGCCTACGAGGCTGAGCAGAAGCTGAGGGTTTCAGGATCCGAAGAGGCCACAGTGCTGACGGTGTGGAAGAAGTCGTTGCTGTTGAATTGCAACGGGTTTACGGTGTTTGACACCAAGGGAAATCTCGTCTTCAGGGTCGACAACTACTTGTCCGGCCGTAAAGGCGAGATCGTCCTCATGGACGCCTACGGCAAGCCTCTCCTCACCATCCGCCGCAAGAGGCTGAGCTTTGGGGATAACTGGATGGTTTACGACGGAGAGACGGAGGAGAATCCGCGGTTCTGCGTGAGGAAGAACGTGAACATGCTAAACAACAAGTACTTGGCGCAAGTGAACAACAAGAAGTCGGTGCTGTACCAGGTAGAAGGGTCGTACGCGCAGAGGTGCTGCGCCGTGTACGACGGAAAGAGAAGGAAGGTGGCGGAGATCAAGAGGAAGGAAGCGGCGGTGGGCGGAGTGGCGTTGGGAGTCGACGTCTTCCGCCTCGTCGTACAGCCCGATCTCGACACGTCAGTGGCCATGGCGTTTGTCATCCTCCTTGACCAGATGTACAGCTCGTCGTCGTCTTCTAGACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

237

Amino Acids

26.44

Weight (kDa)

9.44

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 62 - 226 1e-38 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccI GTMKAC 3 cut(s) 96, 273, 606
AccII CGCG 2 cut(s) 412, 512
AclWI GGATC 2 cut(s) 165, 178
AcoI YGGCCR 3 cut(s) 123, 289, 651
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 318, 609
AfaI GTAC 6 cut(s) 455, 491, 509, 533, 627, 686
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 3 cut(s) 31, 75, 220
AjiI CACGTC 1 cut(s) 645
AjnI CCWGG 1 cut(s) 492
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 4 cut(s) 78, 157, 363, 690
AluI AGCT 4 cut(s) 78, 157, 363, 690
Alw26I GTCTC 2 cut(s) 136, 389
AlwI GGATC 2 cut(s) 165, 178
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 4 cut(s) 123, 180, 289, 651
ApeKI GCWGC 4 cut(s) 110, 113, 116, 522
AspLEI GCGC 3 cut(s) 463, 514, 527
AsuHPI GGTGA 1 cut(s) 331
BalI TGGCCA 1 cut(s) 653
BamHI GGATCC 1 cut(s) 170
BbsI GAAGAC 3 cut(s) 256, 604, 693
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 4 cut(s) 97, 125, 128, 509
BccI CCATC 3 cut(s) 26, 350, 373
BceAI ACGGC 4 cut(s) 138, 276, 340, 512
BciT130I CCWGG 1 cut(s) 494
BcoDI GTCTC 2 cut(s) 136, 389
BfaI CTAG 2 cut(s) 44, 705
BfmI CTRYAG 1 cut(s) 111
BglI GCCNNNNNGGC 2 cut(s) 143, 297
BisI GCNGC 6 cut(s) 111, 114, 117, 349, 523, 579
BlpI GCTNAGC 2 cut(s) 147, 359
BlsI GCNGC 6 cut(s) 112, 115, 118, 350, 524, 580
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 494
BmgBI CACGTC 1 cut(s) 645
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 494
BpiI GAAGAC 3 cut(s) 256, 604, 693
Bpu10I CCTNAGC 1 cut(s) 158
Bpu1102I GCTNAGC 2 cut(s) 147, 359
BsaHI GRCGYC 2 cut(s) 318, 609
BsaJI CCNNGG 4 cut(s) 120, 249, 410, 654
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bse1I ACTGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 4 cut(s) 120, 249, 410, 654
BseGI GGATG 3 cut(s) 342, 384, 666
BseMII CTCAG 3 cut(s) 138, 149, 350
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 326, 416
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 4 cut(s) 97, 125, 128, 509
Bsh1236I CGCG 2 cut(s) 412, 512
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 4 cut(s) 125, 182, 291, 653
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 288
BsiWI CGTACG 1 cut(s) 507
BsmAI GTCTC 2 cut(s) 136, 389
BsmBI CGTCTC 1 cut(s) 389
BsnI GGCC 4 cut(s) 125, 182, 291, 653
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 4 cut(s) 170, 303, 561, 634
Bsp1720I GCTNAGC 2 cut(s) 147, 359
Bsp19I CCATGG 1 cut(s) 654
BspANI GGCC 4 cut(s) 125, 182, 291, 653
BspCNI CTCAG 3 cut(s) 139, 150, 351
BspFNI CGCG 2 cut(s) 412, 512
BspLI GGNNCC 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 2 cut(s) 165, 178
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 4 cut(s) 120, 249, 410, 654
BssMI GATC 4 cut(s) 170, 303, 561, 634
BssNAI GTATAC 1 cut(s) 97
BssNI GRCGYC 2 cut(s) 318, 609
BssT1I CCWWGG 2 cut(s) 249, 654
Bst1107I GTATAC 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 187, 196, 238
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 2 cut(s) 318, 609
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 3 cut(s) 147, 158, 359
BstDSI CCRYGG 3 cut(s) 120, 410, 654
BstF5I GGATG 3 cut(s) 342, 384, 666
BstFNI CGCG 2 cut(s) 412, 512
BstHHI GCGC 3 cut(s) 463, 514, 527
BstKTI GATC 4 cut(s) 173, 306, 564, 637
BstMAI GTCTC 2 cut(s) 136, 389
BstMBI GATC 4 cut(s) 170, 303, 561, 634
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 116, 122, 143, 297
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 2 cut(s) 412, 512
BstV1I GCAGC 4 cut(s) 97, 125, 128, 509
BstV2I GAAGAC 3 cut(s) 256, 604, 693
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BstZ17I GTATAC 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 4 cut(s) 125, 182, 291, 653
BtgI CCRYGG 3 cut(s) 120, 410, 654
BtrI CACGTC 1 cut(s) 645
BtsCI GGATG 3 cut(s) 342, 384, 666
BtsIMutI CAGTG 2 cut(s) 192, 654
Cac8I GCNNGC 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 3 cut(s) 463, 514, 527
Cfr42I CCGCGG 1 cut(s) 413
CseI GACGC 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 6 cut(s) 454, 490, 508, 532, 626, 685
CviAII CATG 3 cut(s) 313, 439, 655
CviQI GTAC 6 cut(s) 454, 490, 508, 532, 626, 685
DdeI CTNAG 3 cut(s) 147, 158, 359
DpnI GATC 4 cut(s) 172, 305, 563, 636
DpnII GATC 4 cut(s) 170, 303, 561, 634
EaeI YGGCCR 3 cut(s) 123, 289, 651
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 5 cut(s) 124, 335, 572, 603, 605
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 249, 654
Eco52I CGGCCG 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 2 cut(s) 249, 654
ErhI CCWWGG 2 cut(s) 249, 654
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 3 cut(s) 316, 442, 658
FaiI YATR 4 cut(s) 97, 314, 440, 656
FatI CATG 3 cut(s) 312, 438, 654
FblI GTMKAC 3 cut(s) 96, 273, 606
Fnu4HI GCNGC 6 cut(s) 111, 114, 117, 349, 523, 579
FokI GGATG 3 cut(s) 329, 391, 653
Fsp4HI GCNGC 6 cut(s) 111, 114, 117, 349, 523, 579
FspBI CTAG 2 cut(s) 44, 705
GlaI GCGC 3 cut(s) 462, 513, 526
GluI GCNGC 6 cut(s) 111, 114, 117, 349, 523, 579
HaeIII GGCC 4 cut(s) 125, 182, 291, 653
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 326
HhaI GCGC 3 cut(s) 463, 514, 527
Hin1I GRCGYC 2 cut(s) 318, 609
Hin1II CATG 3 cut(s) 316, 442, 658
Hin6I GCGC 3 cut(s) 461, 512, 525
HinP1I GCGC 3 cut(s) 461, 512, 525
HincII GTYRAC 2 cut(s) 274, 607
HindII GTYRAC 2 cut(s) 274, 607
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 2 cut(s) 406, 603
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 8 cut(s) 97, 234, 274, 385, 436, 469, 532, 607
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 4 cut(s) 168, 565, 638, 705
Hpy8I GTNNAC 8 cut(s) 97, 234, 274, 385, 436, 469, 532, 607
Hpy99I CGWCG 6 cut(s) 392, 539, 611, 626, 697, 700
HpyAV CCTTC 5 cut(s) 37, 494, 540, 544, 565
HpyCH4III ACNGT 3 cut(s) 187, 196, 238
HpyCH4IV ACGT 4 cut(s) 432, 609, 644, 709
HpyCH4V TGCA 2 cut(s) 113, 225
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 122, 143, 297
HpyF3I CTNAG 3 cut(s) 147, 158, 359
HpySE526I ACGT 4 cut(s) 432, 609, 644, 709
Hsp92I GRCGYC 2 cut(s) 318, 609
Hsp92II CATG 3 cut(s) 316, 442, 658
HspAI GCGC 3 cut(s) 461, 512, 525
KspI CCGCGG 1 cut(s) 413
Kzo9I GATC 4 cut(s) 170, 303, 561, 634
LpnPI CCDG 7 cut(s) 153, 253, 301, 361, 479, 506, 692
Lsp1109I GCAGC 4 cut(s) 97, 125, 128, 509
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 2 cut(s) 44, 705
MaeII ACGT 4 cut(s) 432, 609, 644, 709
MaeIII GTNAC 1 cut(s) 7
MalI GATC 4 cut(s) 172, 305, 563, 636
MboI GATC 4 cut(s) 170, 303, 561, 634
MboII GAAGA 6 cut(s) 188, 214, 256, 439, 604, 693
MflI RGATCY 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 1 cut(s) 220
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 1 cut(s) 612
Mox20I TGGCCA 1 cut(s) 653
MscI TGGCCA 1 cut(s) 653
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 2 cut(s) 412, 512
MwoI GCNNNNNNNGC 4 cut(s) 116, 122, 143, 297
NcoI CCATGG 1 cut(s) 654
NdeII GATC 4 cut(s) 170, 303, 561, 634
NlaIII CATG 3 cut(s) 316, 442, 658
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 1 cut(s) 442
OliI CACNNNNGTG 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PfeI GAWTC 1 cut(s) 406
Pfl23II CGTACG 1 cut(s) 507
PkrI GCNGC 6 cut(s) 112, 115, 118, 350, 524, 580
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspLI CGTACG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 6 cut(s) 455, 491, 509, 533, 627, 686
RsaNI GTAC 6 cut(s) 454, 490, 508, 532, 626, 685
RseI CAYNNNNRTG 1 cut(s) 647
SacII CCGCGG 1 cut(s) 413
SalI GTCGAC 2 cut(s) 272, 605
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 6 cut(s) 111, 114, 117, 349, 523, 579
Sau3AI GATC 4 cut(s) 170, 303, 561, 634
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 612
ScrFI CCNGG 1 cut(s) 494
SexAI ACCWGGT 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 111
Sfr303I CCGCGG 1 cut(s) 413
SgrBI CCGCGG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 647
Sse9I AATT 1 cut(s) 220
SspMI CTAG 2 cut(s) 44, 705
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 2 cut(s) 249, 654
TaaI ACNGT 3 cut(s) 187, 196, 238
TaiI ACGT 4 cut(s) 435, 612, 647, 712
TaqI TCGA 3 cut(s) 273, 606, 639
TasI AATT 1 cut(s) 220
TatI WGTACW 2 cut(s) 453, 684
TauI GCSGC 2 cut(s) 351, 581
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 192, 654
TseI GCWGC 4 cut(s) 110, 113, 116, 522
TspGWI ACGGA 3 cut(s) 405, 413, 552
TspRI CASTG 2 cut(s) 192, 654
XbaI TCTAGA 1 cut(s) 704
XceI RCATGY 1 cut(s) 442
XmiI GTMKAC 3 cut(s) 96, 273, 606
XspI CTAG 2 cut(s) 44, 705
ZraI GACGTC 1 cut(s) 610
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.