Rmu_sc0000240.1_g000002

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
OG0013414
Physical Location & Seq
Forward (+)
17839 .. 19132
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000002.1.cds

Sequence Viewer

Length: 957 bp
atgacaaaagtatacccaaatggtgctgcagcagccacggccaatgtctccgcctacgaggctgagcagaagctgagggtttcaggatccgaagaggccacagtgctgacggtgtggaagaagtcgttgctgttgaattgcaacgggtttacggtgtttgacaccaagggaaatctcgtcttcagggtcgacaactacttgtccggccgtaaaggcgagatcgtcctcatggacgcctacggcaagcctctcctcaccatccgccgcaagaggctgagctttggggataactggatggtttacgacggagagacggaggagaatccgcggttctgcgtgaggaagagcctacatgtgtcagccacggccaatgtctccgcctacgaggctgagcagaagctgagggtttcaggatccgaagaggccacagtgctgacggtgtggaagaagtcgttgctgttgaattgcaacgggtttacggtgtttgacaccaagggaaatctcgtcttcagggtcgacaactacttgtccggccgtaaaggcgagatcgtcctcatggacgcctacggcaagcctctcctcaccatccgccgcaagaggctgagctttggggataactggatggtttacgacggagagacggaggagaatccgcggttctgcgtgaggaagaacgtgaacatgctaaacaacaagtacttggcgcaagtgaacaacaagaagtcggtgctgtaccaggtagaagggtcgtacgcgcagaggtgctgcgccgtgtacgacggaaagagaaggaaggtggcggagatcaagaggaaggaagcggcggtgggcggagtggcgttgggagtcgacgtcttccgcctcgtcgtacagcccgatctcgacacgtcagtggccatggcgtttgtcatcctccttgaccagatgtacagctcgtcgtcgtcttctagacgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

318

Amino Acids

35.68

Weight (kDa)

9.4

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 855
AccI GTMKAC 4 cut(s) 12, 189, 516, 849
AccII CGCG 3 cut(s) 328, 655, 755
AclWI GGATC 4 cut(s) 81, 94, 408, 421
AcoI YGGCCR 5 cut(s) 39, 205, 366, 532, 894
AcuI CTGAAG 2 cut(s) 166, 493
AcyI GRCGYC 3 cut(s) 234, 561, 852
AfaI GTAC 6 cut(s) 698, 734, 752, 776, 870, 929
AflIII ACRYGT 2 cut(s) 352, 885
AgsI TTSAA 2 cut(s) 136, 463
AjiI CACGTC 1 cut(s) 888
AjnI CCWGG 1 cut(s) 735
AleI CACNNNNGTG 1 cut(s) 890
AluBI AGCT 5 cut(s) 73, 279, 400, 606, 933
AluI AGCT 5 cut(s) 73, 279, 400, 606, 933
Alw26I GTCTC 4 cut(s) 52, 305, 379, 632
AlwI GGATC 4 cut(s) 81, 94, 408, 421
AlwNI CAGNNNCTG 2 cut(s) 73, 400
AoxI GGCC 7 cut(s) 39, 96, 205, 366, 423, 532, 894
ApeKI GCWGC 4 cut(s) 26, 29, 32, 765
AspLEI GCGC 3 cut(s) 706, 757, 770
AsuHPI GGTGA 2 cut(s) 247, 574
BalI TGGCCA 1 cut(s) 896
BamHI GGATCC 2 cut(s) 86, 413
BbsI GAAGAC 4 cut(s) 172, 499, 847, 936
BbvCI CCTCAGC 2 cut(s) 74, 401
BbvI GCAGC 4 cut(s) 13, 41, 44, 752
BccI CCATC 4 cut(s) 266, 289, 593, 616
BceAI ACGGC 7 cut(s) 54, 192, 256, 381, 519, 583, 755
BciT130I CCWGG 1 cut(s) 737
BcoDI GTCTC 4 cut(s) 52, 305, 379, 632
BfaI CTAG 1 cut(s) 948
BfmI CTRYAG 1 cut(s) 27
BglI GCCNNNNNGGC 4 cut(s) 59, 213, 386, 540
BisI GCNGC 7 cut(s) 27, 30, 33, 265, 592, 766, 822
BlpI GCTNAGC 4 cut(s) 63, 275, 390, 602
BlsI GCNGC 7 cut(s) 28, 31, 34, 266, 593, 767, 823
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 1 cut(s) 737
BmgBI CACGTC 1 cut(s) 888
BmiI GGNNCC 2 cut(s) 88, 415
BmrFI CCNGG 1 cut(s) 737
BpiI GAAGAC 4 cut(s) 172, 499, 847, 936
Bpu10I CCTNAGC 2 cut(s) 74, 401
Bpu1102I GCTNAGC 4 cut(s) 63, 275, 390, 602
BsaHI GRCGYC 3 cut(s) 234, 561, 852
BsaJI CCNNGG 7 cut(s) 36, 165, 326, 363, 492, 653, 897
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bse1I ACTGG 2 cut(s) 296, 623
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 7 cut(s) 36, 165, 326, 363, 492, 653, 897
BseGI GGATG 5 cut(s) 258, 300, 585, 627, 909
BseMII CTCAG 6 cut(s) 54, 65, 266, 381, 392, 593
BseNI ACTGG 2 cut(s) 296, 623
BseRI GAGGAG 4 cut(s) 242, 332, 569, 659
BseX3I CGGCCG 2 cut(s) 205, 532
BseXI GCAGC 4 cut(s) 13, 41, 44, 752
Bsh1236I CGCG 3 cut(s) 328, 655, 755
Bsh1285I CGRYCG 2 cut(s) 208, 535
BshFI GGCC 7 cut(s) 41, 98, 207, 368, 425, 534, 896
BsiEI CGRYCG 2 cut(s) 208, 535
BsiSI CCGG 2 cut(s) 204, 531
BsiWI CGTACG 1 cut(s) 750
BsmAI GTCTC 4 cut(s) 52, 305, 379, 632
BsmBI CGTCTC 2 cut(s) 305, 632
BsnI GGCC 7 cut(s) 41, 98, 207, 368, 425, 534, 896
Bsp1407I TGTACA 1 cut(s) 927
Bsp143I GATC 6 cut(s) 86, 219, 413, 546, 804, 877
Bsp1720I GCTNAGC 4 cut(s) 63, 275, 390, 602
Bsp19I CCATGG 1 cut(s) 897
BspANI GGCC 7 cut(s) 41, 98, 207, 368, 425, 534, 896
BspCNI CTCAG 6 cut(s) 55, 66, 267, 382, 393, 594
BspFNI CGCG 3 cut(s) 328, 655, 755
BspLI GGNNCC 2 cut(s) 88, 415
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 4 cut(s) 81, 94, 408, 421
BspQI GCTCTTC 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 927
BsrI ACTGG 2 cut(s) 296, 623
BssECI CCNNGG 7 cut(s) 36, 165, 326, 363, 492, 653, 897
BssMI GATC 6 cut(s) 86, 219, 413, 546, 804, 877
BssNAI GTATAC 1 cut(s) 13
BssNI GRCGYC 3 cut(s) 234, 561, 852
BssT1I CCWWGG 3 cut(s) 165, 492, 897
Bst1107I GTATAC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 6 cut(s) 103, 112, 154, 430, 439, 481
Bst6I CTCTTC 3 cut(s) 87, 338, 414
BstACI GRCGYC 3 cut(s) 234, 561, 852
BstAUI TGTACA 1 cut(s) 927
BstC8I GCNNGC 2 cut(s) 245, 572
BstDEI CTNAG 6 cut(s) 63, 74, 275, 390, 401, 602
BstDSI CCRYGG 5 cut(s) 36, 326, 363, 653, 897
BstF5I GGATG 5 cut(s) 258, 300, 585, 627, 909
BstFNI CGCG 3 cut(s) 328, 655, 755
BstHHI GCGC 3 cut(s) 706, 757, 770
BstKTI GATC 6 cut(s) 89, 222, 416, 549, 807, 880
BstMAI GTCTC 4 cut(s) 52, 305, 379, 632
BstMBI GATC 6 cut(s) 86, 219, 413, 546, 804, 877
BstMCI CGRYCG 2 cut(s) 208, 535
BstMWI GCNNNNNNNGC 6 cut(s) 32, 38, 59, 213, 386, 540
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 2 cut(s) 356, 685
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 3 cut(s) 328, 655, 755
BstV1I GCAGC 4 cut(s) 13, 41, 44, 752
BstV2I GAAGAC 4 cut(s) 172, 499, 847, 936
BstX2I RGATCY 2 cut(s) 86, 413
BstYI RGATCY 2 cut(s) 86, 413
BstZ17I GTATAC 1 cut(s) 13
BstZI CGGCCG 2 cut(s) 205, 532
BsuRI GGCC 7 cut(s) 41, 98, 207, 368, 425, 534, 896
BtgI CCRYGG 5 cut(s) 36, 326, 363, 653, 897
BtrI CACGTC 1 cut(s) 888
BtsCI GGATG 5 cut(s) 258, 300, 585, 627, 909
BtsIMutI CAGTG 3 cut(s) 108, 435, 897
Cac8I GCNNGC 2 cut(s) 245, 572
CaiI CAGNNNCTG 2 cut(s) 73, 400
CfoI GCGC 3 cut(s) 706, 757, 770
Cfr42I CCGCGG 2 cut(s) 329, 656
CseI GACGC 2 cut(s) 242, 569
CsiI ACCWGGT 1 cut(s) 735
Csp6I GTAC 6 cut(s) 697, 733, 751, 775, 869, 928
CviAII CATG 5 cut(s) 229, 353, 556, 682, 898
CviQI GTAC 6 cut(s) 697, 733, 751, 775, 869, 928
DdeI CTNAG 6 cut(s) 63, 74, 275, 390, 401, 602
DpnI GATC 6 cut(s) 88, 221, 415, 548, 806, 879
DpnII GATC 6 cut(s) 86, 219, 413, 546, 804, 877
EaeI YGGCCR 5 cut(s) 39, 205, 366, 532, 894
EagI CGGCCG 2 cut(s) 205, 532
Eam1104I CTCTTC 3 cut(s) 87, 338, 414
EarI CTCTTC 3 cut(s) 87, 338, 414
EciI GGCGGA 7 cut(s) 40, 251, 367, 578, 815, 846, 848
EclXI CGGCCG 2 cut(s) 205, 532
Eco130I CCWWGG 3 cut(s) 165, 492, 897
Eco52I CGGCCG 2 cut(s) 205, 532
Eco57I CTGAAG 2 cut(s) 166, 493
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 3 cut(s) 165, 492, 897
ErhI CCWWGG 3 cut(s) 165, 492, 897
Esp3I CGTCTC 2 cut(s) 305, 632
FaeI CATG 5 cut(s) 232, 356, 559, 685, 901
FaiI YATR 6 cut(s) 13, 230, 354, 557, 683, 899
FatI CATG 5 cut(s) 228, 352, 555, 681, 897
FblI GTMKAC 4 cut(s) 12, 189, 516, 849
Fnu4HI GCNGC 7 cut(s) 27, 30, 33, 265, 592, 766, 822
FokI GGATG 5 cut(s) 245, 307, 572, 634, 896
Fsp4HI GCNGC 7 cut(s) 27, 30, 33, 265, 592, 766, 822
FspBI CTAG 1 cut(s) 948
GlaI GCGC 3 cut(s) 705, 756, 769
GluI GCNGC 7 cut(s) 27, 30, 33, 265, 592, 766, 822
HaeIII GGCC 7 cut(s) 41, 98, 207, 368, 425, 534, 896
HapII CCGG 2 cut(s) 204, 531
HgaI GACGC 2 cut(s) 242, 569
HhaI GCGC 3 cut(s) 706, 757, 770
Hin1I GRCGYC 3 cut(s) 234, 561, 852
Hin1II CATG 5 cut(s) 232, 356, 559, 685, 901
Hin6I GCGC 3 cut(s) 704, 755, 768
HinP1I GCGC 3 cut(s) 704, 755, 768
HincII GTYRAC 3 cut(s) 190, 517, 850
HindII GTYRAC 3 cut(s) 190, 517, 850
HinfI GANTC 3 cut(s) 322, 649, 846
HpaII CCGG 2 cut(s) 204, 531
HphI GGTGA 2 cut(s) 247, 574
Hpy188I TCNGA 2 cut(s) 91, 418
Hpy188III TCNNGA 5 cut(s) 84, 411, 808, 881, 948
Hpy99I CGWCG 7 cut(s) 308, 635, 782, 854, 869, 940, 943
HpyAV CCTTC 4 cut(s) 737, 783, 787, 808
HpyCH4III ACNGT 6 cut(s) 103, 112, 154, 430, 439, 481
HpyCH4IV ACGT 4 cut(s) 675, 852, 887, 952
HpyCH4V TGCA 3 cut(s) 29, 141, 468
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 38, 59, 213, 386, 540
HpyF3I CTNAG 6 cut(s) 63, 74, 275, 390, 401, 602
HpySE526I ACGT 4 cut(s) 675, 852, 887, 952
Hsp92I GRCGYC 3 cut(s) 234, 561, 852
Hsp92II CATG 5 cut(s) 232, 356, 559, 685, 901
HspAI GCGC 3 cut(s) 704, 755, 768
KspI CCGCGG 2 cut(s) 329, 656
Kzo9I GATC 6 cut(s) 86, 219, 413, 546, 804, 877
LguI GCTCTTC 1 cut(s) 338
Lsp1109I GCAGC 4 cut(s) 13, 41, 44, 752
MabI ACCWGGT 1 cut(s) 735
MaeI CTAG 1 cut(s) 948
MaeII ACGT 4 cut(s) 675, 852, 887, 952
MalI GATC 6 cut(s) 88, 221, 415, 548, 806, 879
MboI GATC 6 cut(s) 86, 219, 413, 546, 804, 877
MflI RGATCY 2 cut(s) 86, 413
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 2 cut(s) 136, 463
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 1 cut(s) 855
Mox20I TGGCCA 1 cut(s) 896
MscI TGGCCA 1 cut(s) 896
MslI CAYNNNNRTG 1 cut(s) 890
Msp20I TGGCCA 1 cut(s) 896
MspA1I CMGCKG 2 cut(s) 328, 655
MspI CCGG 2 cut(s) 204, 531
MspR9I CCNGG 1 cut(s) 737
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 3 cut(s) 328, 655, 755
MwoI GCNNNNNNNGC 6 cut(s) 32, 38, 59, 213, 386, 540
NcoI CCATGG 1 cut(s) 897
NdeII GATC 6 cut(s) 86, 219, 413, 546, 804, 877
NlaIII CATG 5 cut(s) 232, 356, 559, 685, 901
NlaIV GGNNCC 2 cut(s) 88, 415
NspI RCATGY 2 cut(s) 356, 685
OliI CACNNNNGTG 1 cut(s) 890
PciI ACATGT 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PfeI GAWTC 2 cut(s) 322, 649
Pfl23II CGTACG 1 cut(s) 750
PkrI GCNGC 7 cut(s) 28, 31, 34, 266, 593, 767, 823
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
PscI ACATGT 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspLI CGTACG 1 cut(s) 750
PspN4I GGNNCC 2 cut(s) 88, 415
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 2 cut(s) 73, 400
PsuI RGATCY 2 cut(s) 86, 413
RsaI GTAC 6 cut(s) 698, 734, 752, 776, 870, 929
RsaNI GTAC 6 cut(s) 697, 733, 751, 775, 869, 928
RseI CAYNNNNRTG 1 cut(s) 890
SacII CCGCGG 2 cut(s) 329, 656
SalI GTCGAC 3 cut(s) 188, 515, 848
SapI GCTCTTC 1 cut(s) 338
SatI GCNGC 7 cut(s) 27, 30, 33, 265, 592, 766, 822
Sau3AI GATC 6 cut(s) 86, 219, 413, 546, 804, 877
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 855
ScrFI CCNGG 1 cut(s) 737
SexAI ACCWGGT 1 cut(s) 735
SfcI CTRYAG 1 cut(s) 27
Sfr303I CCGCGG 2 cut(s) 329, 656
SgrBI CCGCGG 2 cut(s) 329, 656
SmiMI CAYNNNNRTG 1 cut(s) 890
Sse9I AATT 2 cut(s) 136, 463
SspMI CTAG 1 cut(s) 948
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 3 cut(s) 165, 492, 897
TaaI ACNGT 6 cut(s) 103, 112, 154, 430, 439, 481
TaiI ACGT 4 cut(s) 678, 855, 890, 955
TaqI TCGA 4 cut(s) 189, 516, 849, 882
TasI AATT 2 cut(s) 136, 463
TatI WGTACW 2 cut(s) 696, 927
TauI GCSGC 3 cut(s) 267, 594, 824
TfiI GAWTC 2 cut(s) 322, 649
TscAI CASTG 3 cut(s) 108, 435, 897
TseI GCWGC 4 cut(s) 26, 29, 32, 765
TspGWI ACGGA 5 cut(s) 321, 329, 648, 656, 795
TspRI CASTG 3 cut(s) 108, 435, 897
XbaI TCTAGA 1 cut(s) 947
XceI RCATGY 2 cut(s) 356, 685
XmiI GTMKAC 4 cut(s) 12, 189, 516, 849
XspI CTAG 1 cut(s) 948
ZraI GACGTC 1 cut(s) 853
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.