pycom12g18170

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013414
Physical Location & Seq
Reverse (-)
20387437 .. 20388219
783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18170.2

Sequence Viewer

Length: 663 bp
ATGACAAAGGTGTACCCAAACAGTGCTAATGCCAATATTGTCCCCGCCTACGAGCCTCAGAGGCTCAACAGTAGTTCCGGCTCCGACAACGAAGCCGCGACGGTCCTCACGGTGTGGAAGAAGTCTTTGCTGTTGAACTGCAATGGGTTCACAGTGTTCGACTCCAAGGGGAATCTGGTCTTTAGGGTTGATAATTACTTGGCCGGCCATAAGGGCGAGATCGTCCTCATGGACGCCGCCGGCAAGCCTCTCCTCACCATCCGTCGCAAGCGGCTGAGCTTGGGAGACAACTGGGTGGTGTACGACGGAGAAACCACGGAGAATCCGCGGTTCTGCGCGACCAAGCACGTGAACATCCTCAAGAACAAGTGCTTGGCGCACGTGACCTCCGCCAACAGCCGCAAAGGTAGTGACGCGTCGAAAAATTACGACAACAAGAACGCGGTATTTTATCAGATGGAAGGTTCGTACGCGCAGCGGTGCTGCGCGGTGTACGACAGCAAGAGGAGGAGGGTGGCGGAGATCAAGAGGAAGGAGGCGGTGGGCGGAGTGGCGTTGGGAGTCGACGTCTTCCGCCTCATCGTGCAGCCCGATATGGACACGTCGGTGGTCATGTCCCTCGTTATCTTGCTTGACCAGATGTACGGGACGTCGAGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

221

Amino Acids

24.43

Weight (kDa)

9.43

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 570, 653
AccI GTMKAC 1 cut(s) 564
AccII CGCG 7 cut(s) 98, 328, 338, 416, 443, 473, 488
AcoI YGGCCR 2 cut(s) 201, 205
AcvI CACGTG 2 cut(s) 349, 382
AcyI GRCGYC 3 cut(s) 234, 567, 650
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 5 cut(s) 14, 302, 470, 494, 644
AflIII ACRYGT 2 cut(s) 414, 600
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 603
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 279
AoxI GGCC 2 cut(s) 201, 205
ApeKI GCWGC 3 cut(s) 475, 483, 586
AspLEI GCGC 4 cut(s) 338, 379, 475, 488
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 103
BbrPI CACGTG 2 cut(s) 349, 382
BbsI GAAGAC 1 cut(s) 562
BbvI GCAGC 3 cut(s) 470, 487, 598
BccI CCATC 2 cut(s) 266, 451
BcoDI GTCTC 1 cut(s) 279
BglI GCCNNNNNGGC 2 cut(s) 61, 213
BisI GCNGC 7 cut(s) 96, 237, 272, 400, 476, 484, 587
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 7 cut(s) 97, 238, 273, 401, 477, 485, 588
Bme18I GGWCC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 562
Bpu1102I GCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 344
BsaAI YACGTR 2 cut(s) 349, 382
BsaHI GRCGYC 3 cut(s) 234, 567, 650
BsaJI CCNNGG 3 cut(s) 165, 315, 326
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 552, 582
Bse118I RCCGGY 2 cut(s) 203, 239
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 3 cut(s) 165, 315, 326
BseGI GGATG 2 cut(s) 258, 354
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 71, 266
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 242, 520, 523
BseXI GCAGC 3 cut(s) 470, 487, 598
BsgI GTGCAG 1 cut(s) 605
Bsh1236I CGCG 7 cut(s) 98, 328, 338, 416, 443, 473, 488
BshFI GGCC 2 cut(s) 203, 207
BsiSI CCGG 3 cut(s) 78, 204, 240
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 26, 601
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 26, 601
BsnI GGCC 2 cut(s) 203, 207
Bsp143I GATC 2 cut(s) 219, 522
Bsp1720I GCTNAGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 203, 207
BspCNI CTCAG 2 cut(s) 70, 267
BspFNI CGCG 7 cut(s) 98, 328, 338, 416, 443, 473, 488
BspLI GGNNCC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 203, 239
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 2 cut(s) 203, 239
BssECI CCNNGG 3 cut(s) 165, 315, 326
BssMI GATC 2 cut(s) 219, 522
BssNI GRCGYC 3 cut(s) 234, 567, 650
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 5 cut(s) 23, 71, 103, 112, 154
BstACI GRCGYC 3 cut(s) 234, 567, 650
BstBAI YACGTR 2 cut(s) 349, 382
BstC8I GCNNGC 4 cut(s) 205, 241, 245, 269
BstDEI CTNAG 2 cut(s) 57, 275
BstDSI CCRYGG 2 cut(s) 315, 326
BstF5I GGATG 2 cut(s) 258, 354
BstFNI CGCG 7 cut(s) 98, 328, 338, 416, 443, 473, 488
BstHHI GCGC 4 cut(s) 338, 379, 475, 488
BstKTI GATC 2 cut(s) 222, 525
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 2 cut(s) 219, 522
BstMWI GCNNNNNNNGC 2 cut(s) 61, 213
BstUI CGCG 7 cut(s) 98, 328, 338, 416, 443, 473, 488
BstV1I GCAGC 3 cut(s) 470, 487, 598
BstV2I GAAGAC 1 cut(s) 562
BsuRI GGCC 2 cut(s) 203, 207
BtgI CCRYGG 2 cut(s) 315, 326
BtrI CACGTC 1 cut(s) 603
BtsCI GGATG 2 cut(s) 258, 354
BtsIMutI CAGTG 2 cut(s) 28, 159
Cac8I GCNNGC 4 cut(s) 205, 241, 245, 269
CfoI GCGC 4 cut(s) 338, 379, 475, 488
Cfr10I RCCGGY 2 cut(s) 203, 239
Cfr13I GGNCC 1 cut(s) 103
Cfr42I CCGCGG 1 cut(s) 329
CseI GACGC 3 cut(s) 242, 405, 422
Csp6I GTAC 5 cut(s) 13, 301, 469, 493, 643
CviAII CATG 2 cut(s) 229, 613
CviQI GTAC 5 cut(s) 13, 301, 469, 493, 643
DdeI CTNAG 2 cut(s) 57, 275
DpnI GATC 2 cut(s) 221, 524
DpnII GATC 2 cut(s) 219, 522
DraIII CACNNNGTG 1 cut(s) 114
EaeI YGGCCR 2 cut(s) 201, 205
EciI GGCGGA 4 cut(s) 379, 533, 561, 563
Eco130I CCWWGG 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 103
Eco72I CACGTG 2 cut(s) 349, 382
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 232, 616
FaiI YATR 4 cut(s) 210, 230, 596, 614
FaqI GGGAC 2 cut(s) 26, 601
FatI CATG 2 cut(s) 228, 612
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 7 cut(s) 96, 237, 272, 400, 476, 484, 587
FokI GGATG 2 cut(s) 245, 341
FseI GGCCGGCC 1 cut(s) 207
Fsp4HI GCNGC 7 cut(s) 96, 237, 272, 400, 476, 484, 587
GlaI GCGC 4 cut(s) 337, 378, 474, 487
GluI GCNGC 7 cut(s) 96, 237, 272, 400, 476, 484, 587
HaeIII GGCC 2 cut(s) 203, 207
HapII CCGG 3 cut(s) 78, 204, 240
HgaI GACGC 3 cut(s) 242, 405, 422
HhaI GCGC 4 cut(s) 338, 379, 475, 488
Hin1I GRCGYC 3 cut(s) 234, 567, 650
Hin1II CATG 2 cut(s) 232, 616
Hin6I GCGC 4 cut(s) 336, 377, 473, 486
HinP1I GCGC 4 cut(s) 336, 377, 473, 486
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 4 cut(s) 161, 172, 322, 561
HpaII CCGG 3 cut(s) 78, 204, 240
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 6 cut(s) 13, 150, 301, 352, 493, 565
Hpy188I TCNGA 3 cut(s) 60, 85, 456
Hpy188III TCNNGA 2 cut(s) 361, 526
Hpy8I GTNNAC 6 cut(s) 13, 150, 301, 352, 493, 565
Hpy99I CGWCG 7 cut(s) 103, 267, 308, 421, 569, 607, 655
HpyAV CCTTC 2 cut(s) 455, 526
HpyCH4III ACNGT 5 cut(s) 23, 71, 103, 112, 154
HpyCH4IV ACGT 5 cut(s) 348, 381, 567, 602, 650
HpyCH4V TGCA 2 cut(s) 141, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 213
HpyF3I CTNAG 2 cut(s) 57, 275
HpySE526I ACGT 5 cut(s) 348, 381, 567, 602, 650
Hsp92I GRCGYC 3 cut(s) 234, 567, 650
Hsp92II CATG 2 cut(s) 232, 616
HspAI GCGC 4 cut(s) 336, 377, 473, 486
KroI GCCGGC 2 cut(s) 203, 239
KroNI GCCGGC 2 cut(s) 205, 241
KspI CCGCGG 1 cut(s) 329
Kzo9I GATC 2 cut(s) 219, 522
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 6 cut(s) 91, 161, 217, 253, 277, 650
Lsp1109I GCAGC 3 cut(s) 470, 487, 598
MaeII ACGT 5 cut(s) 348, 381, 567, 602, 650
MaeIII GTNAC 2 cut(s) 382, 410
MalI GATC 2 cut(s) 221, 524
MboI GATC 2 cut(s) 219, 522
MboII GAAGA 2 cut(s) 130, 562
MluCI AATT 2 cut(s) 193, 424
MluI ACGCGT 1 cut(s) 414
MlyI GAGTC 2 cut(s) 155, 570
MmeI TCCRAC 1 cut(s) 108
MroNI GCCGGC 2 cut(s) 203, 239
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 328, 478
MspI CCGG 3 cut(s) 78, 204, 240
MvnI CGCG 7 cut(s) 98, 328, 338, 416, 443, 473, 488
MwoI GCNNNNNNNGC 2 cut(s) 61, 213
NaeI GCCGGC 2 cut(s) 205, 241
NdeII GATC 2 cut(s) 219, 522
NgoMIV GCCGGC 2 cut(s) 203, 239
NlaIII CATG 2 cut(s) 232, 616
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 382, 410
OliI CACNNNNGTG 1 cut(s) 605
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PdiI GCCGGC 2 cut(s) 205, 241
PfeI GAWTC 2 cut(s) 172, 322
Pfl23II CGTACG 1 cut(s) 468
PkrI GCNGC 7 cut(s) 97, 238, 273, 401, 477, 485, 588
PleI GAGTC 2 cut(s) 155, 569
PmaCI CACGTG 2 cut(s) 349, 382
PmlI CACGTG 2 cut(s) 349, 382
PpsI GAGTC 2 cut(s) 155, 569
Ppu21I YACGTR 2 cut(s) 349, 382
PspCI CACGTG 2 cut(s) 349, 382
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 103
RigI GGCCGGCC 1 cut(s) 207
RsaI GTAC 5 cut(s) 14, 302, 470, 494, 644
RsaNI GTAC 5 cut(s) 13, 301, 469, 493, 643
RseI CAYNNNNRTG 1 cut(s) 605
SacII CCGCGG 1 cut(s) 329
SalI GTCGAC 1 cut(s) 563
SatI GCNGC 7 cut(s) 96, 237, 272, 400, 476, 484, 587
Sau3AI GATC 2 cut(s) 219, 522
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 2 cut(s) 155, 570
Sfr303I CCGCGG 1 cut(s) 329
SgrBI CCGCGG 1 cut(s) 329
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 193, 424
SspI AATATT 1 cut(s) 37
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 5 cut(s) 23, 71, 103, 112, 154
TaiI ACGT 5 cut(s) 351, 384, 570, 605, 653
TaqI TCGA 4 cut(s) 159, 419, 564, 653
TasI AATT 2 cut(s) 193, 424
TauI GCSGC 4 cut(s) 98, 239, 274, 402
TfiI GAWTC 2 cut(s) 172, 322
TscAI CASTG 2 cut(s) 28, 159
TseFI GTSAC 2 cut(s) 382, 410
TseI GCWGC 3 cut(s) 475, 483, 586
Tsp45I GTSAC 2 cut(s) 382, 410
TspGWI ACGGA 3 cut(s) 251, 321, 332
TspRI CASTG 2 cut(s) 28, 159
VpaK11BI GGWCC 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 564
ZraI GACGTC 2 cut(s) 568, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.