MD04G1180200.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013414
Physical Location & Seq
Reverse (-)
27108233 .. 27109482
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1180200.v1.1.491

Sequence Viewer

Length: 660 bp
ATGACAAAGGTGTACCCGAACACTGCAAATGCCAACACTGTCCGCGCCTGCGAGCCTCAGAGGCTCAAGAGCTCCAGCTCCGACGACGAAAACACGACGGTCCTGACGGTGTGGAAGAAGTCCTTGCTGTTGAGCTGCAATGGGTTCACGGTGTTCGACTCCAAGGGCAATTTGGTCTTTAGGGTTGATAACTACTTGGCCGGCCATAAGGGCGAGATCGTCCTCATGGACGCCTCCGGCAAACCTCTCCTCACCATCCGTCGCAAGCGGCTGAGCTTGGTGGACAACTGGGTGGTGTACGACGGAGAAACCGAGGTGAATCCGCGGTTCTGCGCGACGAAGCACGTGAACATCCTCAAGAACAAGTGCTTGGCGCACATGACCTCAGCCAACAGCTGCAAAGGTAGTGGCTCGTCGAAAAACTACGACAACAAGAACGCTGTGTTTTATCAGATGGAAGGGTCGTACGCGACGCGGTGCTGCGCGGTGTACGACAGCAAAAGGAGGAGGGTGGCCGAGATCAAGATGAAGGAGGCAGTGGGCGGAGTGGCGTTGGGAGTCGACGTCTTCCGCCTCATCGTGCAGCCCGATATGGACACGGCGGTGGCCATGTCCCTCGTCATCTTGCTTGACCAGATGTACGGGACGTCGAGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

220

Amino Acids

24.34

Weight (kDa)

9.31

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 33 - 211 4.9e-36 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 567, 650
AccI GTMKAC 1 cut(s) 561
AccII CGCG 6 cut(s) 45, 325, 335, 470, 475, 485
AcoI YGGCCR 4 cut(s) 198, 202, 513, 606
AcvI CACGTG 1 cut(s) 346
AcyI GRCGYC 3 cut(s) 231, 564, 647
AfaI GTAC 5 cut(s) 14, 299, 467, 491, 641
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 5 cut(s) 72, 78, 135, 276, 396
AluI AGCT 5 cut(s) 72, 78, 135, 276, 396
Alw21I GWGCWC 1 cut(s) 74
AoxI GGCC 4 cut(s) 198, 202, 513, 606
ApeKI GCWGC 4 cut(s) 135, 396, 480, 583
AspLEI GCGC 4 cut(s) 47, 335, 376, 485
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 244, 328
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 608
BanII GRGCYC 1 cut(s) 74
BbrPI CACGTG 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 385
BbvI GCAGC 4 cut(s) 122, 383, 467, 595
BccI CCATC 2 cut(s) 263, 448
BceAI ACGGC 1 cut(s) 615
BglI GCCNNNNNGGC 2 cut(s) 61, 210
BisI GCNGC 5 cut(s) 136, 269, 397, 481, 584
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 5 cut(s) 137, 270, 398, 482, 585
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 272
BpuEI CTTGAG 2 cut(s) 50, 341
BsaAI YACGTR 1 cut(s) 346
BsaHI GRCGYC 3 cut(s) 231, 564, 647
BsaJI CCNNGG 3 cut(s) 162, 312, 323
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 145
BseDI CCNNGG 3 cut(s) 162, 312, 323
BseGI GGATG 2 cut(s) 255, 351
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 71, 263, 399
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 239, 520
BseXI GCAGC 4 cut(s) 122, 383, 467, 595
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 6 cut(s) 45, 325, 335, 470, 475, 485
BshFI GGCC 4 cut(s) 200, 204, 515, 608
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 201, 237
BsiWI CGTACG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 598
BsnI GGCC 4 cut(s) 200, 204, 515, 608
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 216, 519
Bsp1720I GCTNAGC 1 cut(s) 272
BspANI GGCC 4 cut(s) 200, 204, 515, 608
BspCNI CTCAG 3 cut(s) 70, 264, 398
BspFNI CGCG 6 cut(s) 45, 325, 335, 470, 475, 485
BsrDI GCAATG 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 162, 312, 323
BssMI GATC 2 cut(s) 216, 519
BssNI GRCGYC 3 cut(s) 231, 564, 647
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 4 cut(s) 40, 100, 109, 151
BstACI GRCGYC 3 cut(s) 231, 564, 647
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 4 cut(s) 49, 53, 202, 266
BstDEI CTNAG 3 cut(s) 57, 272, 385
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 255, 351
BstFNI CGCG 6 cut(s) 45, 325, 335, 470, 475, 485
BstHHI GCGC 4 cut(s) 47, 335, 376, 485
BstKTI GATC 2 cut(s) 219, 522
BstMBI GATC 2 cut(s) 216, 519
BstMWI GCNNNNNNNGC 2 cut(s) 61, 210
BstUI CGCG 6 cut(s) 45, 325, 335, 470, 475, 485
BstV1I GCAGC 4 cut(s) 122, 383, 467, 595
BstV2I GAAGAC 1 cut(s) 559
BsuRI GGCC 4 cut(s) 200, 204, 515, 608
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 255, 351
BtsI GCAGTG 2 cut(s) 21, 543
BtsIMutI CAGTG 3 cut(s) 21, 36, 543
Cac8I GCNNGC 4 cut(s) 49, 53, 202, 266
CfoI GCGC 4 cut(s) 47, 335, 376, 485
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 100
Cfr42I CCGCGG 1 cut(s) 326
CseI GACGC 2 cut(s) 239, 481
Csp6I GTAC 5 cut(s) 13, 298, 466, 490, 640
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 3 cut(s) 226, 379, 610
CviQI GTAC 5 cut(s) 13, 298, 466, 490, 640
DdeI CTNAG 3 cut(s) 57, 272, 385
DpnI GATC 2 cut(s) 218, 521
DpnII GATC 2 cut(s) 216, 519
EaeI YGGCCR 4 cut(s) 198, 202, 513, 606
EciI GGCGGA 2 cut(s) 558, 560
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 72
Eco72I CACGTG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 229, 382, 613
FaiI YATR 5 cut(s) 207, 227, 380, 593, 611
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 598
FatI CATG 3 cut(s) 225, 378, 609
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 136, 269, 397, 481, 584
FokI GGATG 2 cut(s) 242, 338
FriOI GRGCYC 1 cut(s) 74
FseI GGCCGGCC 1 cut(s) 204
Fsp4HI GCNGC 5 cut(s) 136, 269, 397, 481, 584
GlaI GCGC 4 cut(s) 46, 334, 375, 484
GluI GCNGC 5 cut(s) 136, 269, 397, 481, 584
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 4 cut(s) 200, 204, 515, 608
HapII CCGG 2 cut(s) 201, 237
HgaI GACGC 2 cut(s) 239, 481
HhaI GCGC 4 cut(s) 47, 335, 376, 485
Hin1I GRCGYC 3 cut(s) 231, 564, 647
Hin1II CATG 3 cut(s) 229, 382, 613
Hin6I GCGC 4 cut(s) 45, 333, 374, 483
HinP1I GCGC 4 cut(s) 45, 333, 374, 483
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 3 cut(s) 158, 319, 558
HpaII CCGG 2 cut(s) 201, 237
HphI GGTGA 2 cut(s) 244, 328
Hpy166II GTNNAC 7 cut(s) 13, 147, 283, 298, 349, 490, 562
Hpy188I TCNGA 3 cut(s) 60, 82, 453
Hpy188III TCNNGA 4 cut(s) 67, 103, 358, 523
Hpy8I GTNNAC 7 cut(s) 13, 147, 283, 298, 349, 490, 562
HpyAV CCTTC 2 cut(s) 452, 523
HpyCH4III ACNGT 4 cut(s) 40, 100, 109, 151
HpyCH4IV ACGT 3 cut(s) 345, 564, 647
HpyCH4V TGCA 4 cut(s) 26, 138, 399, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 210
HpyF3I CTNAG 3 cut(s) 57, 272, 385
HpySE526I ACGT 3 cut(s) 345, 564, 647
Hsp92I GRCGYC 3 cut(s) 231, 564, 647
Hsp92II CATG 3 cut(s) 229, 382, 613
HspAI GCGC 4 cut(s) 45, 333, 374, 483
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
KspI CCGCGG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 216, 519
LmnI GCTCC 2 cut(s) 77, 83
LpnPI CCDG 7 cut(s) 61, 88, 116, 214, 250, 274, 647
Lsp1109I GCAGC 4 cut(s) 122, 383, 467, 595
MaeII ACGT 3 cut(s) 345, 564, 647
MalI GATC 2 cut(s) 218, 521
MboI GATC 2 cut(s) 216, 519
MboII GAAGA 2 cut(s) 127, 559
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 2 cut(s) 152, 567
MmeI TCCRAC 1 cut(s) 105
Mox20I TGGCCA 1 cut(s) 608
MroNI GCCGGC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 608
MslI CAYNNNNRTG 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 608
MspA1I CMGCKG 2 cut(s) 325, 396
MspI CCGG 2 cut(s) 201, 237
MvnI CGCG 6 cut(s) 45, 325, 335, 470, 475, 485
MwoI GCNNNNNNNGC 2 cut(s) 61, 210
NaeI GCCGGC 1 cut(s) 202
NdeII GATC 2 cut(s) 216, 519
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 229, 382, 613
NmeAIII GCCGAG 1 cut(s) 541
OliI CACNNNNGTG 1 cut(s) 602
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 585
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 319
Pfl23II CGTACG 1 cut(s) 465
PkrI GCNGC 5 cut(s) 137, 270, 398, 482, 585
PleI GAGTC 2 cut(s) 152, 566
PmaCI CACGTG 1 cut(s) 346
PmlI CACGTG 1 cut(s) 346
PpsI GAGTC 2 cut(s) 152, 566
Ppu21I YACGTR 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 74
PspCI CACGTG 1 cut(s) 346
PspLI CGTACG 1 cut(s) 465
PspPI GGNCC 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 396
RigI GGCCGGCC 1 cut(s) 204
RsaI GTAC 5 cut(s) 14, 299, 467, 491, 641
RsaNI GTAC 5 cut(s) 13, 298, 466, 490, 640
RseI CAYNNNNRTG 1 cut(s) 602
SacI GAGCTC 1 cut(s) 74
SacII CCGCGG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 560
SatI GCNGC 5 cut(s) 136, 269, 397, 481, 584
Sau3AI GATC 2 cut(s) 216, 519
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 2 cut(s) 152, 567
SduI GDGCHC 1 cut(s) 74
Sfr303I CCGCGG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 326
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 65, 356
SmoI CTYRAG 2 cut(s) 65, 356
Sse9I AATT 1 cut(s) 169
SstI GAGCTC 1 cut(s) 74
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 4 cut(s) 40, 100, 109, 151
TaiI ACGT 3 cut(s) 348, 567, 650
TaqI TCGA 4 cut(s) 156, 416, 561, 650
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 319
TscAI CASTG 3 cut(s) 28, 43, 543
TseI GCWGC 4 cut(s) 135, 396, 480, 583
TspDTI ATGAA 1 cut(s) 542
TspGWI ACGGA 2 cut(s) 248, 318
TspRI CASTG 3 cut(s) 28, 43, 543
VpaK11BI GGWCC 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 561
ZraI GACGTC 2 cut(s) 565, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.