Prupe.6G300100_v2.0.a1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013414
Physical Location & Seq
Reverse (-)
27270960 .. 27272679
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G300100.1

Sequence Viewer

Length: 675 bp
ATGACAAAGGTGTACCCAAACGCTGCCAATGCCAAAATTGCCCTTGCCTACGAGCCTGAGAGGCTCAAGCTTTCTGGTTCCGACCAGGAGGATGCGACGGTGCTGACCGTGTGGAAGAAGTCTTTGCTGCTCAACTGCAATGGCTTCACCGTGTTCGACAACAAGGGCAACTTGGTCTTTAGGGTTGACAACTATTTGGCTGGTCACAAGGGTGAGATCGTCCTCATGGACGCCTGCGGCAAGCCTCTCCTCACCATCCGCCGCAAGCGGCTGAGCTTGGGGGACAACTGGGTGGTGTACGACGGAGAAACGGCGGTGAACCCGCGGTTCTGCGTGAGGAAGAACGTGGGTATCCTCAACAACAACAAGTGTTTGGCGCACGTGACCTCCGCCAACAATGACAAAGGCGCGTCCAAAAATTACGACAACAAAAACTCGATGCTCTATCAGGTGGAAGGGTCGTACGGGCAGCGGTGCTGCGCGGTGTACGACAACAAGAGGAGGAAGGTAGCGGAGATCAAGAGGAAGGAGGCGGCCGTAGGCGGAGTTGCCCTCGGAGTCGACGTCTTCCGCCTCATCGTGCAGCCCGAGATCGACACGTCGGTGGGCATGGCCTTCGTCATCTTGCTTGATCAGATGTACGGGACGTCGTCGTTTTCGCGGCGATCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

225

Amino Acids

24.82

Weight (kDa)

9.34

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 567, 650
AccI GTMKAC 1 cut(s) 561
AccII CGCG 4 cut(s) 325, 410, 482, 661
AcoI YGGCCR 1 cut(s) 534
AcvI CACGTG 1 cut(s) 382
AcyI GRCGYC 3 cut(s) 231, 564, 647
AfaI GTAC 5 cut(s) 14, 299, 464, 488, 641
AflIII ACRYGT 1 cut(s) 597
AjiI CACGTC 1 cut(s) 600
AjnI CCWGG 1 cut(s) 84
AleI CACNNNNGTG 2 cut(s) 210, 602
AluBI AGCT 2 cut(s) 70, 276
AluI AGCT 2 cut(s) 70, 276
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 2 cut(s) 534, 612
ApeKI GCWGC 5 cut(s) 23, 127, 469, 477, 583
AspLEI GCGC 3 cut(s) 379, 410, 482
AsuHPI GGTGA 4 cut(s) 139, 224, 244, 328
AvaI CYCGRG 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 334, 367
BbrPI CACGTG 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 559
BbvI GCAGC 5 cut(s) 10, 114, 464, 481, 595
BccI CCATC 1 cut(s) 263
BceAI ACGGC 2 cut(s) 327, 521
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 86
BciVI GTATCC 1 cut(s) 362
BclI TGATCA 1 cut(s) 631
BfuI GTATCC 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 61
BlpI GCTNAGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 587
BmgBI CACGTC 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 82, 429
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 559
BplI GAGNNNNNCTC 2 cut(s) 537, 569
Bpu1102I GCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 382
BsaHI GRCGYC 3 cut(s) 231, 564, 647
BsaJI CCNNGG 2 cut(s) 323, 553
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 549, 579
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 323, 553
BseGI GGATG 2 cut(s) 97, 255
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 48, 263
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 239, 514
BseX3I CGGCCG 1 cut(s) 534
BseXI GCAGC 5 cut(s) 10, 114, 464, 481, 595
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 4 cut(s) 325, 410, 482, 661
Bsh1285I CGRYCG 1 cut(s) 537
BshFI GGCC 2 cut(s) 536, 614
BsiEI CGRYCG 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 587
BsiWI CGTACG 1 cut(s) 462
BslFI GGGAC 2 cut(s) 296, 658
BsmFI GGGAC 2 cut(s) 296, 658
BsnI GGCC 2 cut(s) 536, 614
BsoBI CYCGRG 1 cut(s) 587
Bsp143I GATC 5 cut(s) 216, 516, 591, 631, 665
Bsp1720I GCTNAGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 536, 614
BspCNI CTCAG 2 cut(s) 49, 264
BspFNI CGCG 4 cut(s) 325, 410, 482, 661
BspLI GGNNCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 323, 553
BssMI GATC 5 cut(s) 216, 516, 591, 631, 665
BssNI GRCGYC 3 cut(s) 231, 564, 647
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 100, 109, 151
BstACI GRCGYC 3 cut(s) 231, 564, 647
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 235, 242, 266
BstDEI CTNAG 2 cut(s) 57, 272
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 97, 255
BstFNI CGCG 4 cut(s) 325, 410, 482, 661
BstHHI GCGC 3 cut(s) 379, 410, 482
BstKTI GATC 5 cut(s) 219, 519, 594, 634, 668
BstMBI GATC 5 cut(s) 216, 516, 591, 631, 665
BstMCI CGRYCG 1 cut(s) 537
BstMWI GCNNNNNNNGC 3 cut(s) 29, 38, 61
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 4 cut(s) 325, 410, 482, 661
BstV1I GCAGC 5 cut(s) 10, 114, 464, 481, 595
BstV2I GAAGAC 1 cut(s) 559
BstZI CGGCCG 1 cut(s) 534
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 536, 614
BtgI CCRYGG 1 cut(s) 323
BtrI CACGTC 1 cut(s) 600
BtsCI GGATG 2 cut(s) 97, 255
Cac8I GCNNGC 3 cut(s) 235, 242, 266
CfoI GCGC 3 cut(s) 379, 410, 482
Cfr42I CCGCGG 1 cut(s) 326
CseI GACGC 2 cut(s) 239, 399
Csp6I GTAC 5 cut(s) 13, 298, 463, 487, 640
CviAII CATG 2 cut(s) 226, 610
CviQI GTAC 5 cut(s) 13, 298, 463, 487, 640
DdeI CTNAG 2 cut(s) 57, 272
DpnI GATC 5 cut(s) 218, 518, 593, 633, 667
DpnII GATC 5 cut(s) 216, 516, 591, 631, 665
EaeI YGGCCR 1 cut(s) 534
EagI CGGCCG 1 cut(s) 534
EciI GGCGGA 4 cut(s) 248, 379, 558, 560
EclXI CGGCCG 1 cut(s) 534
Eco52I CGGCCG 1 cut(s) 534
Eco72I CACGTG 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 229, 613
FaiI YATR 2 cut(s) 227, 611
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 2 cut(s) 296, 658
FatI CATG 2 cut(s) 225, 609
FauI CCCGC 1 cut(s) 330
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 561
FokI GGATG 2 cut(s) 104, 242
GlaI GCGC 3 cut(s) 378, 409, 481
HaeIII GGCC 2 cut(s) 536, 614
HgaI GACGC 2 cut(s) 239, 399
HhaI GCGC 3 cut(s) 379, 410, 482
Hin1I GRCGYC 3 cut(s) 231, 564, 647
Hin1II CATG 2 cut(s) 229, 613
Hin6I GCGC 3 cut(s) 377, 408, 480
HinP1I GCGC 3 cut(s) 377, 408, 480
HincII GTYRAC 2 cut(s) 187, 562
HindII GTYRAC 2 cut(s) 187, 562
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 558
HphI GGTGA 4 cut(s) 139, 224, 244, 328
Hpy166II GTNNAC 6 cut(s) 13, 187, 298, 319, 487, 562
Hpy188I TCNGA 3 cut(s) 82, 557, 636
Hpy188III TCNNGA 1 cut(s) 520
Hpy8I GTNNAC 6 cut(s) 13, 187, 298, 319, 487, 562
Hpy99I CGWCG 6 cut(s) 100, 305, 566, 604, 652, 655
HpyAV CCTTC 4 cut(s) 449, 499, 520, 625
HpyCH4III ACNGT 3 cut(s) 100, 109, 151
HpyCH4IV ACGT 5 cut(s) 345, 381, 564, 599, 647
HpyCH4V TGCA 2 cut(s) 138, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 38, 61
HpyF3I CTNAG 2 cut(s) 57, 272
HpySE526I ACGT 5 cut(s) 345, 381, 564, 599, 647
Hsp92I GRCGYC 3 cut(s) 231, 564, 647
Hsp92II CATG 2 cut(s) 229, 613
HspAI GCGC 3 cut(s) 377, 408, 480
Ksp22I TGATCA 1 cut(s) 631
KspI CCGCGG 1 cut(s) 326
Kzo9I GATC 5 cut(s) 216, 516, 591, 631, 665
LpnPI CCDG 8 cut(s) 60, 69, 71, 98, 186, 247, 274, 434
Lsp1109I GCAGC 5 cut(s) 10, 114, 464, 481, 595
LweI GCATC 2 cut(s) 82, 429
MaeII ACGT 5 cut(s) 345, 381, 564, 599, 647
MaeIII GTNAC 2 cut(s) 203, 382
MalI GATC 5 cut(s) 218, 518, 593, 633, 667
MboI GATC 5 cut(s) 216, 516, 591, 631, 665
MboII GAAGA 3 cut(s) 127, 352, 559
MluCI AATT 2 cut(s) 36, 418
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 105
MslI CAYNNNNRTG 2 cut(s) 210, 602
MspA1I CMGCKG 2 cut(s) 325, 472
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 4 cut(s) 325, 410, 482, 661
MwoI GCNNNNNNNGC 3 cut(s) 29, 38, 61
NdeII GATC 5 cut(s) 216, 516, 591, 631, 665
NlaIII CATG 2 cut(s) 229, 613
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 203, 382
OliI CACNNNNGTG 2 cut(s) 210, 602
PcsI WCGNNNNNNNCGW 2 cut(s) 561, 585
Pfl23II CGTACG 1 cut(s) 462
PflFI GACNNNGTC 1 cut(s) 649
PleI GAGTC 1 cut(s) 566
PmaCI CACGTG 1 cut(s) 382
PmlI CACGTG 1 cut(s) 382
PpsI GAGTC 1 cut(s) 566
Ppu21I YACGTR 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 84
PspCI CACGTG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 84
PspLI CGTACG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 649
RsaI GTAC 5 cut(s) 14, 299, 464, 488, 641
RsaNI GTAC 5 cut(s) 13, 298, 463, 487, 640
RseI CAYNNNNRTG 2 cut(s) 210, 602
SacII CCGCGG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 560
Sau3AI GATC 5 cut(s) 216, 516, 591, 631, 665
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 86
SfaNI GCATC 2 cut(s) 82, 429
Sfr303I CCGCGG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 210, 602
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 36, 418
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 100, 109, 151
TaiI ACGT 5 cut(s) 348, 384, 567, 602, 650
TaqI TCGA 4 cut(s) 156, 437, 561, 594
TasI AATT 2 cut(s) 36, 418
TauI GCSGC 5 cut(s) 240, 264, 271, 536, 664
TseFI GTSAC 2 cut(s) 203, 382
TseI GCWGC 5 cut(s) 23, 127, 469, 477, 583
Tsp45I GTSAC 2 cut(s) 203, 382
TspGWI ACGGA 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 561
ZraI GACGTC 2 cut(s) 565, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.