Rh3CG098000

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013414
Physical Location & Seq
Forward (+)
7672814 .. 7674557
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG098000.1

Sequence Viewer

Length: 915 bp
ATGACTTTCTATCTCATTAGTTTAATAATAATTACAATGCTCTCTTCTTGCGCCATCGATCTCCTCCAAGTTCTTCAACCCTTGGTTGTTTTACACTCTTATTCATTCTGGACCACGCAAAACCCAGACCCTGACCCATGCCCACTTACCCTAAATTCAACTCCGAATCCATCTCCTCCATATATATATACTCCAACCTACATGTGTGTAACTTATTCCATCAACACCTTCAAAAACTCATCACTAGATACCACTCTTAACATTTCCAAACTTTCAAGCTTTGTGATGACAAAAGTATACCCAAATGGTGCTGCAGCAGCCACGGCCAATGTCGCCGCCTACGAGGCTGAGCAGAAGCTGAGGGTTTCAGGATCCGAAGAGGCCACAGTGCTGACGGTGTGGAAGAAGTCGTTGCTGTTGAATTGCAACGGGTTTACGGTGTTTGACACCAAGGGAAATCTCGTCTTTAGGGTCGACAACTACTTGTCCGGCCGTAAAGGCGAGATCGTCCTCATGGACGCCTACGGCAAGCCTCTCCTCACCATCCGCCGCAAGAGGCTGAGCTTTGGGGATAACTGGATGGTTTACGACGGAGAGACGGAGGAGAATCCGCGGTTCTGCGTGAGGAAGAACGTGAACATGCTAAACAACAAGTACTTGGCGCAAGTGAACAACAAGAAGTCGGTGCTGTACCAGGTAGAAGGGTCGTACGCGCAGAGGTGCTGCGCCGTGTACGACGGAAAGAGGAGGAAGGTGGCGGAGATCAAGAGGAAGGAGGCGGCGGTGGGCGGAGTGGCGTTGGGAGTCGACGTCTTCCGCCTCGTCGTACAGCCCGATCTCGACACGTCGGTGGCCATGGCGTTTGTCATCCTCCTTGACCAGATGTACAGCTCGTCGTCGTCTTCTAGACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOR

Protein Analysis

304

Amino Acids

33.97

Weight (kDa)

9.04

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 129 - 293 2.1e-38 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38640
fragaria_vesca FvH4_6g09160
malus_domestica MD04G1180200.v1.1 MD12G1195400.v1.1
prunus_persica Prupe.6G300100_v2.0.a1
pyrus_communis pycom04g15940 pycom12g18170
rosa_chinensis RchiOBHm_Chr3g0459371
rosa_laevigata RLG00000025086
rosa_multiflora Rmu_sc0000240.1_g000002
rosa_roxburghii Rroxscaffold_6G00420220
rosa_rugosa Rorug03G0035900 Rorug03G0036200
rosa_samantha Rh3AG093900 Rh3BG096800 Rh3CG098000 Rh3DG097500
rosa_wichuraiana Rw3G008080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 813
AccI GTMKAC 3 cut(s) 297, 474, 807
AccII CGCG 2 cut(s) 613, 713
AclWI GGATC 2 cut(s) 366, 379
AcoI YGGCCR 3 cut(s) 324, 490, 852
AcsI RAATTY 1 cut(s) 154
AcyI GRCGYC 2 cut(s) 519, 810
AfaI GTAC 6 cut(s) 656, 692, 710, 734, 828, 887
AflIII ACRYGT 2 cut(s) 201, 843
AgsI TTSAA 5 cut(s) 77, 159, 232, 276, 421
AjiI CACGTC 1 cut(s) 846
AjnI CCWGG 1 cut(s) 693
AleI CACNNNNGTG 1 cut(s) 848
AluBI AGCT 4 cut(s) 279, 358, 564, 891
AluI AGCT 4 cut(s) 279, 358, 564, 891
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 2 cut(s) 366, 379
AlwNI CAGNNNCTG 2 cut(s) 131, 358
AoxI GGCC 4 cut(s) 324, 381, 490, 852
ApeKI GCWGC 4 cut(s) 311, 314, 317, 723
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 4 cut(s) 53, 664, 715, 728
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 532
AvaII GGWCC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 854
BamHI GGATCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 805, 894
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 4 cut(s) 298, 326, 329, 710
BccI CCATC 5 cut(s) 62, 178, 227, 551, 574
BceAI ACGGC 4 cut(s) 339, 477, 541, 713
BciT130I CCWGG 1 cut(s) 695
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 2 cut(s) 245, 906
BfmI CTRYAG 1 cut(s) 312
BglI GCCNNNNNGGC 2 cut(s) 344, 498
BisI GCNGC 7 cut(s) 312, 315, 318, 336, 550, 724, 780
BlpI GCTNAGC 2 cut(s) 348, 560
BlsI GCNGC 7 cut(s) 313, 316, 319, 337, 551, 725, 781
BmcAI AGTACT 1 cut(s) 656
Bme1390I CCNGG 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 846
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 695
BpiI GAAGAC 2 cut(s) 805, 894
Bpu10I CCTNAGC 1 cut(s) 359
Bpu1102I GCTNAGC 2 cut(s) 348, 560
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 2 cut(s) 519, 810
BsaJI CCNNGG 5 cut(s) 81, 321, 450, 611, 855
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bse1I ACTGG 1 cut(s) 581
BseBI CCWGG 1 cut(s) 695
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 5 cut(s) 81, 321, 450, 611, 855
BseGI GGATG 3 cut(s) 543, 585, 867
BseMII CTCAG 3 cut(s) 339, 350, 551
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 5 cut(s) 53, 165, 527, 617, 760
BseX3I CGGCCG 1 cut(s) 490
BseXI GCAGC 4 cut(s) 298, 326, 329, 710
Bsh1236I CGCG 2 cut(s) 613, 713
Bsh1285I CGRYCG 1 cut(s) 493
BshFI GGCC 4 cut(s) 326, 383, 492, 854
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 493
BsiSI CCGG 1 cut(s) 489
BsiWI CGTACG 1 cut(s) 708
BsmAI GTCTC 1 cut(s) 590
BsmBI CGTCTC 1 cut(s) 590
BsnI GGCC 4 cut(s) 326, 383, 492, 854
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 5 cut(s) 58, 371, 504, 762, 835
Bsp1720I GCTNAGC 2 cut(s) 348, 560
Bsp19I CCATGG 1 cut(s) 855
BspANI GGCC 4 cut(s) 326, 383, 492, 854
BspCNI CTCAG 3 cut(s) 340, 351, 552
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 2 cut(s) 613, 713
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 2 cut(s) 366, 379
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 5 cut(s) 81, 321, 450, 611, 855
BssMI GATC 5 cut(s) 58, 371, 504, 762, 835
BssNAI GTATAC 1 cut(s) 298
BssNI GRCGYC 2 cut(s) 519, 810
BssT1I CCWWGG 3 cut(s) 81, 450, 855
Bst1107I GTATAC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 3 cut(s) 388, 397, 439
Bst6I CTCTTC 2 cut(s) 49, 372
BstACI GRCGYC 2 cut(s) 519, 810
BstAUI TGTACA 1 cut(s) 885
BstC8I GCNNGC 1 cut(s) 530
BstDEI CTNAG 3 cut(s) 348, 359, 560
BstDSI CCRYGG 3 cut(s) 321, 611, 855
BstF5I GGATG 3 cut(s) 543, 585, 867
BstFNI CGCG 2 cut(s) 613, 713
BstHHI GCGC 4 cut(s) 53, 664, 715, 728
BstKTI GATC 5 cut(s) 61, 374, 507, 765, 838
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 5 cut(s) 58, 371, 504, 762, 835
BstMCI CGRYCG 1 cut(s) 493
BstMWI GCNNNNNNNGC 5 cut(s) 317, 323, 332, 344, 498
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 2 cut(s) 205, 643
BstSCI CCNGG 1 cut(s) 693
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 2 cut(s) 613, 713
BstV1I GCAGC 4 cut(s) 298, 326, 329, 710
BstV2I GAAGAC 2 cut(s) 805, 894
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BstZ17I GTATAC 1 cut(s) 298
BstZI CGGCCG 1 cut(s) 490
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 4 cut(s) 326, 383, 492, 854
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 3 cut(s) 321, 611, 855
BtrI CACGTC 1 cut(s) 846
BtsCI GGATG 3 cut(s) 543, 585, 867
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 530
CaiI CAGNNNCTG 2 cut(s) 131, 358
CfoI GCGC 4 cut(s) 53, 664, 715, 728
Cfr13I GGNCC 1 cut(s) 111
Cfr42I CCGCGG 1 cut(s) 614
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 527
CsiI ACCWGGT 1 cut(s) 693
Csp6I GTAC 6 cut(s) 655, 691, 709, 733, 827, 886
CviAII CATG 5 cut(s) 138, 202, 514, 640, 856
CviQI GTAC 6 cut(s) 655, 691, 709, 733, 827, 886
DdeI CTNAG 3 cut(s) 348, 359, 560
DpnI GATC 5 cut(s) 60, 373, 506, 764, 837
DpnII GATC 5 cut(s) 58, 371, 504, 762, 835
EaeI YGGCCR 3 cut(s) 324, 490, 852
EagI CGGCCG 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 49, 372
EarI CTCTTC 2 cut(s) 49, 372
EciI GGCGGA 4 cut(s) 536, 773, 804, 806
EclXI CGGCCG 1 cut(s) 490
Eco130I CCWWGG 3 cut(s) 81, 450, 855
Eco47I GGWCC 1 cut(s) 111
Eco52I CGGCCG 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 3 cut(s) 81, 450, 855
ErhI CCWWGG 3 cut(s) 81, 450, 855
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 5 cut(s) 141, 205, 517, 643, 859
FatI CATG 5 cut(s) 137, 201, 513, 639, 855
FblI GTMKAC 3 cut(s) 297, 474, 807
Fnu4HI GCNGC 7 cut(s) 312, 315, 318, 336, 550, 724, 780
FokI GGATG 3 cut(s) 530, 592, 854
Fsp4HI GCNGC 7 cut(s) 312, 315, 318, 336, 550, 724, 780
FspBI CTAG 2 cut(s) 245, 906
GlaI GCGC 4 cut(s) 52, 663, 714, 727
GluI GCNGC 7 cut(s) 312, 315, 318, 336, 550, 724, 780
HaeIII GGCC 4 cut(s) 326, 383, 492, 854
HapII CCGG 1 cut(s) 489
HgaI GACGC 1 cut(s) 527
HhaI GCGC 4 cut(s) 53, 664, 715, 728
Hin1I GRCGYC 2 cut(s) 519, 810
Hin1II CATG 5 cut(s) 141, 205, 517, 643, 859
Hin6I GCGC 4 cut(s) 51, 662, 713, 726
HinP1I GCGC 4 cut(s) 51, 662, 713, 726
HincII GTYRAC 2 cut(s) 475, 808
HindII GTYRAC 2 cut(s) 475, 808
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 3 cut(s) 166, 607, 804
HpaII CCGG 1 cut(s) 489
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 8 cut(s) 298, 435, 475, 586, 637, 670, 733, 808
Hpy188I TCNGA 2 cut(s) 165, 376
Hpy188III TCNNGA 5 cut(s) 109, 369, 766, 839, 906
Hpy8I GTNNAC 8 cut(s) 298, 435, 475, 586, 637, 670, 733, 808
Hpy99I CGWCG 7 cut(s) 593, 740, 812, 827, 850, 898, 901
HpyAV CCTTC 4 cut(s) 238, 695, 745, 766
HpyCH4III ACNGT 3 cut(s) 388, 397, 439
HpyCH4IV ACGT 4 cut(s) 633, 810, 845, 910
HpyCH4V TGCA 2 cut(s) 314, 426
HpyF10VI GCNNNNNNNGC 5 cut(s) 317, 323, 332, 344, 498
HpyF3I CTNAG 3 cut(s) 348, 359, 560
HpySE526I ACGT 4 cut(s) 633, 810, 845, 910
Hsp92I GRCGYC 2 cut(s) 519, 810
Hsp92II CATG 5 cut(s) 141, 205, 517, 643, 859
HspAI GCGC 4 cut(s) 51, 662, 713, 726
KspI CCGCGG 1 cut(s) 614
Kzo9I GATC 5 cut(s) 58, 371, 504, 762, 835
LpnPI CCDG 9 cut(s) 94, 138, 144, 354, 502, 562, 680, 707, 893
Lsp1109I GCAGC 4 cut(s) 298, 326, 329, 710
MabI ACCWGGT 1 cut(s) 693
MaeI CTAG 2 cut(s) 245, 906
MaeII ACGT 4 cut(s) 633, 810, 845, 910
MaeIII GTNAC 1 cut(s) 208
MalI GATC 5 cut(s) 60, 373, 506, 764, 837
MboI GATC 5 cut(s) 58, 371, 504, 762, 835
MboII GAAGA 7 cut(s) 36, 65, 389, 415, 640, 805, 894
MflI RGATCY 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 3 cut(s) 30, 154, 421
MluNI TGGCCA 1 cut(s) 854
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 854
MscI TGGCCA 1 cut(s) 854
MseI TTAA 2 cut(s) 23, 258
MslI CAYNNNNRTG 1 cut(s) 848
Msp20I TGGCCA 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 695
MvnI CGCG 2 cut(s) 613, 713
MwoI GCNNNNNNNGC 5 cut(s) 317, 323, 332, 344, 498
NcoI CCATGG 1 cut(s) 855
NdeII GATC 5 cut(s) 58, 371, 504, 762, 835
NlaIII CATG 5 cut(s) 141, 205, 517, 643, 859
NlaIV GGNNCC 1 cut(s) 373
NspI RCATGY 2 cut(s) 205, 643
OliI CACNNNNGTG 1 cut(s) 848
PciI ACATGT 1 cut(s) 201
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 831
PfeI GAWTC 2 cut(s) 166, 607
Pfl23II CGTACG 1 cut(s) 708
PkrI GCNGC 7 cut(s) 313, 316, 319, 337, 551, 725, 781
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
PscI ACATGT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 693
PspGI CCWGG 1 cut(s) 693
PspLI CGTACG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 2 cut(s) 131, 358
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 6 cut(s) 656, 692, 710, 734, 828, 887
RsaNI GTAC 6 cut(s) 655, 691, 709, 733, 827, 886
RseI CAYNNNNRTG 1 cut(s) 848
SacII CCGCGG 1 cut(s) 614
SalI GTCGAC 2 cut(s) 473, 806
SaqAI TTAA 2 cut(s) 23, 258
SatI GCNGC 7 cut(s) 312, 315, 318, 336, 550, 724, 780
Sau3AI GATC 5 cut(s) 58, 371, 504, 762, 835
Sau96I GGNCC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 656
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 1 cut(s) 695
SexAI ACCWGGT 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 312
Sfr303I CCGCGG 1 cut(s) 614
SgrBI CCGCGG 1 cut(s) 614
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 848
Sse9I AATT 3 cut(s) 30, 154, 421
SspMI CTAG 2 cut(s) 245, 906
StyD4I CCNGG 1 cut(s) 693
StyI CCWWGG 3 cut(s) 81, 450, 855
TaaI ACNGT 3 cut(s) 388, 397, 439
TaiI ACGT 4 cut(s) 636, 813, 848, 913
TaqI TCGA 4 cut(s) 57, 474, 807, 840
TasI AATT 3 cut(s) 30, 154, 421
TatI WGTACW 2 cut(s) 654, 885
TauI GCSGC 3 cut(s) 338, 552, 782
TfiI GAWTC 2 cut(s) 166, 607
Tru1I TTAA 2 cut(s) 23, 258
Tru9I TTAA 2 cut(s) 23, 258
TscAI CASTG 1 cut(s) 393
TseI GCWGC 4 cut(s) 311, 314, 317, 723
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 3 cut(s) 606, 614, 753
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 154
XbaI TCTAGA 1 cut(s) 905
XceI RCATGY 2 cut(s) 205, 643
XmiI GTMKAC 3 cut(s) 297, 474, 807
XspI CTAG 2 cut(s) 245, 906
ZraI GACGTC 1 cut(s) 811
ZrmI AGTACT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.